BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44973.1
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330900 jgi|Araly1|330900|fgenesh1_pm.C_scaffold_8000243 209 1e-53
> Ahg330900 jgi|Araly1|330900|fgenesh1_pm.C_scaffold_8000243
Length=228
Score = 209 bits (113), Expect = 1e-53
Identities = 152/171 (89%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 167 ATTTAGAAGAAGGGAATATAAAAAGAATCGATGTGAATCATGGAGGGATATGTGACACAT 226
||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 59 ATTTAGAAGAAGGAAATACAAAAACAATCGATGTGAATCATGGAGGGATATGTGATACAT 118
Query 227 ACCTTGAGTGTGGAGGGTTGGC-ATGTTCTGATTATCGTCGGGCGTGTTGCGTAAACGGA 285
|||||||||||||| | || | ||||||||||||||||||||||||||||||||| |||
Sbjct 119 ACCTTGAGTGTGGAAAGATG-CTATGTTCTGATTATCGTCGGGCGTGTTGCGTAAATGGA 177
Query 286 AAATGTGTATGCCGCAAACAAGGCCAAACTCTGCCCGATTGCCCAAACTAA 336
|| ||| | |||||||||| |||||||| | |||| | ||||||||||||
Sbjct 178 AAGTGTATTTGCCGCAAACCAGGCCAAAATGTGCCAAACTGCCCAAACTAA 228
Score = 97.1 bits (52), Expect = 8e-20
Identities = 60/63 (95%), Gaps = 3/63 (5%)
Strand=Plus/Plus
Query 28 ATGACCAACCTTTATTTTAAGACGGCTTTTCTTCTCTCCCTCTTGTTACTGTCCTTCTCT 87
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGACCAACCTTTATTTTAAGACGGCTTTTCTTCTCTCCCTCTTGTT---GTCCTTCTCT 57
Query 88 TAT 90
|||
Sbjct 58 TAT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13774167629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5