BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44980.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948577 jgi|Araly1|948577|scaffold_800464.1 625 4e-178
Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425 556 1e-157
Ahg915671 jgi|Araly1|915671|Al_scaffold_0008_422 521 5e-147
Ahg948576 jgi|Araly1|948576|scaffold_800463.1 514 8e-145
Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423 488 5e-137
Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1 261 1e-68
Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1 250 2e-65
Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424 230 3e-59
Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426 189 5e-47
Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1 147 3e-34
> Ahg948577 jgi|Araly1|948577|scaffold_800464.1
Length=839
Score = 625 bits (338), Expect = 4e-178
Identities = 637/776 (82%), Gaps = 42/776 (5%)
Strand=Plus/Plus
Query 205 GTTCCTGGACTCGAATTATTCACCCTTCAATT-CACATATCCTGATCGCGAAGAAATCTT 263
||||||||||| ||||| |||| | |||| | || ||||| | | |||||| |||
Sbjct 45 GTTCCTGGACTTAAATTACGCACCAGTGAATTCCCCA-ATCCT--T-GTGAAGAAGGCTT 100
Query 264 TGTAAGGTTTATGGACAGATTTATGGAGTTTAAGTG-CAGGTCACGCCTGAAAAAGTTC- 321
| |||||||||||||||||||||||||||||| || || ||||| | || ||||||||
Sbjct 101 CGCAAGGTTTATGGACAGATTTATGGAGTTTAACTGCCA-GTCACACTTGGAAAAGTTCG 159
Query 322 ATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGAGTTGATCGGTACA 381
| |||||| ||| |||| || || || |||||||||||||| ||||| |||||||||||
Sbjct 160 A-GATAACTTATTTCGAATGCAATGGCTATCGAGATCGATTCATGGACCTGATCGGTACA 218
Query 382 CTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTTTGACAGAGTTGAT 441
||||||||| |||| |||| || ||| ||||||| ||| |||||| ||||| ||||
Sbjct 219 GTGGTTGATCGTGGAATTCAACACTTGGATGTTTTAATGTATACTTGCAACAGAAATGAT 278
Query 442 TTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCATAACG-T 500
|||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 279 TTCATACGTCAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTG-TAAATAT 337
Query 501 AGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTG-G 559
|||||||||||| |||| |||||||||||||||||||||||||||||| || || |
Sbjct 338 AGAGTTAAAGAAACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCTATG 397
Query 560 AGAATATTTGTCACGGTGAGGATGGTCCT-TTGGTTGTGGAGAAGCTCATCTCAGGATGT 618
|| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 398 C-AACGTTTGTTACGGTGAGGATGGTCCTATTG-TTGTGGAGAAGCTCATCTCAGGATGT 455
Query 619 TCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA-CATAAAGTTCT 677
||||||||||||||||| | ||| |||||||||||| |||| || | || ||||||||
Sbjct 456 CCTGTTCTTGAAGATCTTCAACTGCTTAGGCCTTTTGGTATTTTGA-ATCAAAAAGTTCT 514
Query 678 TCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT-AC----CTT--ACA--TTT 728
||| |||||||| | || |||||||| ||||||||| || | ||| ||| |||
Sbjct 515 GCTGTTTCTGCGTATAAGGTCTCAGACACTGAAAAGCCTTCAAGTGTCTTTTACACCTTT 574
Query 729 TGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCCA-AGACTCAAG 786
| ||| ||| | | | ||||||||||||||||||||||||| ||||| | |||||||
Sbjct 575 T---ATCAATACG-AGGGGTACAGATTTTTCAGTTGAGATTGATACTCCACA-ACTCAAG 629
Query 787 TATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTG 846
|||||||||||||||||| |||| || ||||||||| |||||||||| || |||||||||
Sbjct 630 TATATGACTGTTGAACAGTGTCACTCGGATAGCATTATGGTAAAGAAACTTAGTTCCTTG 689
Query 847 TTCAGCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGAGGATCTAAGGATGCGT 906
||||| |||||||||||| | ||||| |||||||||||||| ||| | | |
Sbjct 690 TTCAGGATCGACATTGGTTCCAAATTGCATCCTTTGAGACATTTTGAT-T-----T---T 740
Query 907 AATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAACATATGATCATCTG 962
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 741 AATATTTTCCGTGATTTTTTAACCGGGATATCTAGTGTAAGACATATGATCATCTG 796
> Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425
Length=774
Score = 556 bits (301), Expect = 1e-157
Identities = 626/777 (81%), Gaps = 46/777 (6%)
Strand=Plus/Plus
Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTA-TGC 421
|||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| ||| ||
Sbjct 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTATTG- 59
Query 422 ATACTTTTGAC-AGAG-T-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGG 478
| ||| || | | || | || |||| ||| | |||||||||||||||||||||||||
Sbjct 60 -TTCTTCTGTCAAAAGATATGGTTTCTTGCGTGAGAACATTTACAAGAGCAAGACATTGG 118
Query 479 TCTCTTTGAAGCTTCAT-AACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCT 537
||| |||||| ||| | || ||||||||||||||| || | ||||||||||||||||||
Sbjct 119 TCTTTTTGAACCTT-TTCAATGTAGAGTTAAAGAATCCAAAGTTTGTTGTTTCTCTACCT 177
Query 538 TGTCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTG 595
| |||||||||| || || || || | |||||| |||||||||||||||| |||||
Sbjct 178 TATCTCAAGATCATGCGTCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTCTGGTTC 235
Query 596 TGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTG 655
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 236 TTGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTG 295
Query 656 ATA-TTAGGACACATAAAGTTCTT-CTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAG 713
||| || ||| || |||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 296 ATACTT-TGACTCACAAAGTT-TTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAA 353
Query 714 CTTTACCTTACATTTTGCGATC-TATAAGGATCG-TACAGATTTTTCAGTTGAGATTGAT 771
| || ||| ||||||||| | ||||||| | | |||||||||||||||||||||||||
Sbjct 354 CCTTGGTTTATATTTTGCGA-CATATAAGGGT-GATACAGATTTTTCAGTTGAGATTGAT 411
Query 772 GCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAG 831
|||||| |||||||||||||||||||| || | | ||||||||||| |||||||||||||
Sbjct 412 GCTCCACGACTCAAGTATATGACTGTTAAAGACATTCAATCTGATAACATTGTGGTAAAG 471
Query 832 AACCTGAGTTCCTTGTTCA-GCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGA 890
|||||||| |||||||||| | ||| ||||| |||| |||| || ||| | ||||| | |
Sbjct 472 AACCTGAGCTCCTTGTTCATG-ATCAACATTCGTACCAAATATATTCCATCGAGACCTAA 530
Query 891 GGA-TCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAAC 949
||| | ||| | ||| ||| | |||||||| ||||| ||||||||||||| ||
Sbjct 531 GGACTTTAAA-A-----AAT-TTTG-T--GATTTTTTTACCGGCATATCTAGTGTAAGAC 580
Query 950 ATATGATCATCTGTT-TGTGGAGTCTCCAGAGGTTTT-CTCCTTATTCAAAACC-CGGAC 1006
||||||| ||| | || | ||| ||||| ||| | ||| ||| | ||| |||||
Sbjct 581 ATATGATAATC-GACCTGCCTATTCTAGAGAGGCTTTAC-CCTAATT-ACAACTTCGGAC 637
Query 1007 TGATTCCCAAATTCCAGAACTTGTATCATTTAAAAGCACAGATGTGGAGCTCATCAAC-A 1065
|||||||||||||| ||||||||| |||| | || || | | | ||||| | |
Sbjct 638 CGATTCCCAAATTCCTTAACTTGTATTATTTGGAGGCTGAGGTCAGCCGATCATCG-CTA 696
Query 1066 CA-CTTATTGGAAGCGTTTCTTGAGAGCTGC-CCAAATCTGAAAAACCTCATCTTGG 1120
|| || |||| || |||||||| |||| | ||||||||||||| |||||| ||||
Sbjct 697 CAACT-ATTGTCGGCCTTTCTTGAAAGCT-CTCCAAATCTGAAAACCCTCATTTTGG 751
> Ahg915671 jgi|Araly1|915671|Al_scaffold_0008_422
Length=807
Score = 521 bits (282), Expect = 5e-147
Identities = 566/698 (81%), Gaps = 39/698 (6%)
Strand=Plus/Plus
Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGAC-TTCAGCATTTGTATGTTTTTATGCA 422
|||||||||||| || | ||||||||| ||| | |||| |||||| | ||||||| | |
Sbjct 1 ATGGAGTTGATCAATAGAGTGGTTGATCTTGG-CATTCAACATTTGGAGGTTTTTAAGTA 59
Query 423 TACTT-TTGACAG-AGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGT 479
| ||| | | | | | | || ||||| |||||||||||||||||||||||||||||||
Sbjct 60 TCCTTGTAG-C-GCA-TATGGTTTCATGTGTCAAAACATTTACAAGAGCAAGACATTGGT 116
Query 480 CTCTTTGAAGCTTCAT-AACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTT 538
||||||||| ||| | || |||||||||||||| |||| ||||| |||||||||||||
Sbjct 117 CTCTTTGAACCTT-GTAAATATAGAGTTAAAGAATCCAGAGTTTGTGGTTTCTCTACCTT 175
Query 539 GTCTCAAGATCTTGAAACTGGAGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGG 598
||||||| ||| || | | || |||||||||||||||||||||||||||||||||
Sbjct 176 GTCTCAAAATCATGCATTTATTTAACGTTTGTCACGGTGAGGATGGTCCTTTGGTTGTGG 235
Query 599 AGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATA 658
||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
Sbjct 236 AGAGGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTAACA 295
Query 659 TTAGGACACATAAAG-T-T------C-TT---CTGCTTCTGCGTGTGAGCTCTCAGACTC 706
|| |||| || |||| | | | || ||| |||||| |||||| ||||||||||
Sbjct 296 TTTGGACTCAAAAAGTTCTCAAAAACTTTAAGCTGTTTCTGCATGTGAGGTCTCAGACTC 355
Query 707 TGAAAAGCTTTACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAG 765
|||||||| || ||| ||||||| || ||| || | | |||||||||||| ||||||
Sbjct 356 TGAAAAGCCTTGGTTTATATTTTGCTATGAATAGGGGT-GATACAGATTTTTCTGTTGAG 414
Query 766 ATTGATGCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTG 825
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |
Sbjct 415 ATTGATGCTCCAAGACTCAAGTATATGAGTGTTGAACAGAGTCAAACGGATAGCATTGCG 474
Query 826 GTAAAGAACCTGAGTTCCTTGTTCAGCATCGACATTGGTACTAA-ATTTAATCCTTTGAG 884
||||||||| |||||||||||||||| || |||||| ||| | | | | |||| | |||
Sbjct 475 GTAAAGAACTTGAGTTCCTTGTTCAGGATTGACATTCGTA-TCAGAGATCATCCATCGAG 533
Query 885 AC-ATGAGGATCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTG 943
|| | || ||| || | ||| |||||| |||||||||||||||||||||||||
Sbjct 534 ACCA-GATGAT-TA----T----AATATTTTCTGTGATTTTTTAACCGGGATATCTAGTG 583
Query 944 TAAAACATATGATCATCTGT-TTGTGGAGTCTCCAGAGGTTTTCTCCTTATTCAAAACCC 1002
||| ||||||||| |||| || |||||||| ||||| ||| || || ||| ||||
Sbjct 584 TAAGACATATGATAATCTACATT-TGGAGTCTAGAGAGGCTTTATCGTTCTTCGAAACTT 642
Query 1003 GGACTGATTCCCAAATTCCAGAACTTGTATCATTTAAA 1040
|| |||||| |||||||| |||||||| ||||||||
Sbjct 643 AAACCGATTCCTAAATTCCATAACTTGTACCATTTAAA 680
> Ahg948576 jgi|Araly1|948576|scaffold_800463.1
Length=720
Score = 514 bits (278), Expect = 8e-145
Identities = 481/578 (83%), Gaps = 17/578 (3%)
Strand=Plus/Plus
Query 309 CCTGAAAAAGTTCATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGA 368
|||| ||||||||| ||||| ||||| ||| || || ||||||||||||||||| |||||
Sbjct 3 CCTGCAAAAGTTCAAGATAATGTATGACGAATGCAATGGTTATCGAGATCGATTCATGGA 62
Query 369 GTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTT 428
||| ||||||| ||||||||| |||| |||| || ||| |||| |||||| ||| ||
Sbjct 63 CCTGACCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTCTTTATGAATAGTTG 122
Query 429 TGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGA 487
| ||| | | |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 123 CAAAAGA-TATAATTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGT 181
Query 488 AGCTTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGA 547
|||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 182 CGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTAGCTTGTCTCAAGA 241
Query 548 TCTTGAAACTG-GAGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTC 606
|| || | ||| | || ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 242 TCATGCATCTGTGC-AACGTTTGTTACGGTGAGGATGGTCCTTTGGATGTGGAGAAGCTT 300
Query 607 ATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA 666
|| ||||||||| ||||||||||||||||| ||||| |||||| |||| ||||| ||
Sbjct 301 ATATCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGGTTAGGCTTTTTAATATTTTGAGT 360
Query 667 CATAAA-GTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTTACCTT-AC 724
|| | | ||||| ||| || |||||||||||||||||||| || ||||| || | || |
Sbjct 361 CA-AGATGTTCTGCTGTTTTTGCGTGTGAGCTCTCAGACTATGGAAAGCCTT-CGTTTAT 418
Query 725 ATTTTGCGATC--TA-TA-AGGATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA 780
||||||| || || || ||| | ||||||||||||||||||||||| |||||||||||
Sbjct 419 ATTTTGCCATAGATAATACAGG-TGGTACAGATTTTTCAGTTGAGATTAATGCTCCAAGA 477
Query 781 CTCAAGTATATGAC-TGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAG 839
|||||||||||||| |||| | |||||| || |||||| ||| ||||||||||||||||
Sbjct 478 CTCAAGTATATGACATGTT-ATGAGAGTCTATTTGATAGAATTATGGTAAAGAACCTGAG 536
Query 840 TTCCTTGTTCAGC-ATCGACATTGGTACTAAATTTAAT 876
||| ||||| | | |||||||| ||| |||| ||||
Sbjct 537 TTCTTTGTTTA-CTATCGACATCAATACCAAATATAAT 573
> Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423
Length=510
Score = 488 bits (264), Expect = 5e-137
Identities = 407/474 (86%), Gaps = 18/474 (4%)
Strand=Plus/Plus
Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTATGCA 422
|||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| |||| |
Sbjct 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTAT-TA 59
Query 423 TACTTTTGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCT 481
| | ||| | ||| | || ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 60 TTC-TTT-A-AGA-TATGGTTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCT 115
Query 482 CTTTGAAGC--TTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTG 539
||||||||| |||| | | ||||||||||||| |||| ||||||| ||||||||||||
Sbjct 116 CTTTGAAGCTTTTCA-ATC-TAGAGTTAAAGAAACCAGAGTTTGTTGCTTCTCTACCTTG 173
Query 540 TCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTG 597
|||||||||| || | || || || | |||||| |||||||||||||||||||||||||
Sbjct 174 TCTCAAGATCATGCATCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTTTGGTTGTG 231
Query 598 GAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGAT 657
||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||
Sbjct 232 GAGAAGCTCATCTCAGGATGTCCTGCTCTTGAATATCTTAAGCTGATTAGGCCTTTTGAT 291
Query 658 ATTAGGACACATAAAGTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT 717
||| || || |||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 292 ATTTCGAGTCAAAAAGTTCTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCCTT 351
Query 718 ACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCC 776
||| ||| |||| || |||||| | | ||||||||||||||||||||||||||||||
Sbjct 352 GGTTTATATTATGCGTTCAATAAGGGT-GATACAGATTTTTCAGTTGAGATTGATGCTCC 410
Query 777 AAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTG-GTAA 829
| ||||||||||||||| |||| || ||||||||||||||| ||||||| ||||
Sbjct 411 ACGACTCAAGTATATGATTGTTAAAGAGAGTCAATCTGATAACATTGTGAGTAA 464
> Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1
Length=1158
Score = 261 bits (141), Expect = 1e-68
Identities = 638/867 (74%), Gaps = 78/867 (9%)
Strand=Plus/Plus
Query 457 ATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCATA-ACGTAGAG-TTAAAGAATT 514
||||| ||||||||||||||||| ||||| |||||| || ||||||| || ||||
Sbjct 220 ATTTATAAGAGCAAGACATTGGTGTCTTTAAAGCTT-GTATGCGTAGAGCTT-GAGAACC 277
Query 515 CAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTTG-TCAC 573
|| | ||||||||||||||||||||||||||||||||| | || || || ||||| | |
Sbjct 278 CAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGCATCTTGAAAAAATTTGGT-AT 336
Query 574 GGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGAT 633
|| | ||||||||||| ||||||||||| |||||| |||| ||| ||||||||||||||
Sbjct 337 TGTTATGATGGTCCTTTAGTTGTGGAGAAACTCATCGCAGGGTGTCCTGTTCTTGAAGAT 396
Query 634 CTTGAGC-TGATTAGGCCTTT-TGATATTAGGACACATAAAGTTCTTC-TGCTTCTGCGT 690
||| | | || | ||| || |||| ||| | | || | ||| | | ||| | | |
Sbjct 397 CTT-ACCATGGTAAGGA-TTCATGATGC--GGATATACAA-GCTCTGCCT-CTTTTACAT 450
Query 691 GTGAGCTCTCAGACTCTGAAAAGCTTTACC-TT-ACAT-TTTGCGATCTATA-AGGATCG 746
||||| |||| ||||||||| | ||| || || | || ||| || | | | || |
Sbjct 451 GTGAGGTCTCTGACTCTGAAGATCTT--CCGTTTA-ATGTTTA--ATTTGGAGATGA-C- 503
Query 747 TAC-AGA--T-TTTTCAGTTGAGATTGATGCTCCAAGACTCAAGTATATGACTGTTGAA- 801
||| ||| | |||| || |||||||||||||||| |||||||||| | | | || ||
Sbjct 504 TACTAGACCTATTTTG-GTGGAGATTGATGCTCCAAAACTCAAGTATCTAAGTTTTAAAG 562
Query 802 C-AGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTGTTCA-GCATCGACA 859
| || | |||||||||| || |||||||||| |||||||| ||||||| | || |||
Sbjct 563 CTAG-G-CAATCTGATAAAATCATGGTAAAGAATCTGAGTTCATTGTTCAAG-ATAGACC 619
Query 860 TTGGTACTAAATTTA-----A-T-CCTTTGAGACATGAGGATCTAAGGATGCGTA-A--T 909
||| |||| | ||| | | |||| || || | ||| |||||| | | | | |
Sbjct 620 TTGATACTGATTTTGGCGGCAGTTCCTTGGA-ACCCCATGATTTAAGGAAGAGAAGAGAT 678
Query 910 GTT-TTCTACGATTTTTTAACCGGGATATCTAGTGTAAAACATATGATCATCTGTTTGTG 968
|| ||| ||| || | || | || || ||||||| |||||||||||||| | |
Sbjct 679 ATTATTCG-CGACGTTCTCACTTGTATTTCGAGTGTAAGACATATGATCATCTCTCAACG 737
Query 969 GAGTCTCCAGAGGTTTT-C-TCCTTATTCAAAACCCGGACTGATTCCCAAATTCCAGAAC 1026
| ||| |||||| | | | ||||||||||| ||||| ||||||||||||||| ||
Sbjct 738 TACTCT--AGAGGTCATACATGGTTATTCAAAACTCGGACCGATTCCCAAATTCCATCAC 795
Query 1027 TTGTAT-CATTTAAAAGCACAG-ATG-TGGAGCTCATCAACACA-CTTATTGGAAGCGTT 1082
| | ||||| || || | | || | ||| |||| ||| || |||| || ||
Sbjct 796 CTA-ACGCATTTGAAGGC-C-GCATTCTCCAGCACATCGTTACAACT-ATTGCTCGCCTT 851
Query 1083 TCTTGAGAGCTGCCCAAATCTGAAAAACCTCATCTTGGAAT-ATAATGTTG-AATTGGAT 1140
||||||||||||||||||||| ||||||||||| ||||| | || |||| || |||
Sbjct 852 TCTTGAGAGCTGCCCAAATCTTAAAAACCTCATATTGGACTTATC-TGTTTCAAC-GGAG 909
Query 1141 CGAGAGC-AAGTGGACT-TTACCAACGTGCCTCAATGTTTAATATCGACGCTGGAGTATG 1198
| ||||| || | || | ||||||| ||||||| ||| ||| | |||| ||||||| |
Sbjct 910 CCAGAGCGAA-TCGA-TATTACCAATGTGCCTCGGTGTATAACAACGACTCTGGAGTGTA 967
Query 1199 TTGAGATTAA-AGAACCGA-ATG-A-G--A-AAAGTACGATTAAACTAGTGAACTACTTT 1251
|||||||||| | ||| || | | | | | ||| | |||||||||||| | || |||
Sbjct 968 TTGAGATTAACA-AACTGATAAGGAAGGGAGAAACTGGGATTAAACTAGTTCAGTATTTT 1026
Query 1252 CTTGAGAATTCAGCAGTCCTCAAGAAA 1278
||||| |||||| || |||| ||||||
Sbjct 1027 CTTGAAAATTCACCAATCCTTAAGAAA 1053
> Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1
Length=1324
Score = 250 bits (135), Expect = 2e-65
Identities = 655/891 (74%), Gaps = 96/891 (11%)
Strand=Plus/Plus
Query 454 AACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCAT-AACGTAGAG-TTAAAGA 511
||||||| |||||||||||| ||||| ||||| || | || | || |||| | || | |
Sbjct 385 AACATTTTCAAGAGCAAGACGTTGGTGTCTTTAAAAC-TCGTAAATGTAGGGCTT-GACA 442
Query 512 ATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAAC-TGGAGAATATTTGT 570
|| || | |||||||| ||| ||||||||||||||||| || | | || || | |||| |
Sbjct 443 ATCCAAAGTTTGTTGTGTCTTTACCTTGTCTCAAGATCATGCATCTTGAAG-ACATTT-T 500
Query 571 CACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAA 630
| || |||||||| |||||||||||||| ||||| | ||| |||||||||||
Sbjct 501 -----T---TATAGTCCTTTGATTGTGGAGAAGCTCCTCTCAAGCTGTCCTGTTCTTGAA 552
Query 631 GATCTTGAGCTGATTAGGCCTTTTGATATTAGGACACAT-AA-AGTTCTTCTGC-TTCTG 687
|||||| | | ||| | | | | | || ||| || | || ||| | |||||
Sbjct 553 GATCTT-A-C-CATT--G-----T-A-A-GA-AAC-CATGAAGATTTTTTCAACTTTCTG 597
Query 688 CGTGTGAGCTCTCAGACTCTGAAAAGCTTTACC--TT-ACATTTTGCGA-T-CTATAA-G 741
| |||||| ||||| ||| |||| | | || || || ||| ||| || | | || |
Sbjct 598 CTTGTGAGGTCTCAAACTTTGAAGA-CCTT-CCGTTTAACA-TTT--GATTGGGA-AATG 651
Query 742 GATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGACTCAAGTATATGA-CTGTTGA 800
| | ||||||||||||| || ||||||||||||||| |||| ||||| |||| || || |
Sbjct 652 GGTAGTACAGATTTTTCGGTCGAGATTGATGCTCCAGGACTTAAGTACATGAGCT-TT-A 709
Query 801 -ACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTGTTC-AGCATCGAC 858
| | |||||||||||||| || || |||||||| |||| |||||| || || || |||
Sbjct 710 GAGATAGTCAATCTGATAGAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAG-ATAGAC 768
Query 859 ATTGGTACTAAATTTAATC-C----TT----T--G-AGACATGAGG-ATCTAAGGA--TG 903
||| |||| ||||||||| | || | | || | | || | | |||| ||
Sbjct 769 CTTGATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTG 828
Query 904 --C--G-TA-ATGTT-TTCTACGATTTT-TTAACCGGGATATCTAGTGTAAAACATATGA 955
| | | || || | | | |||||| || ||||| || || ||||||||||||||||
Sbjct 829 ACCAAGAGAGATATTATCCGA-GATTTTCTT-ACCGGTATTTCAAGTGTAAAACATATGA 886
Query 956 TCATCTGTTTGTGGAGT-CTCCAGAGGT--TTTCTCCTTATTCAAAACCCGGACTGATTC 1012
|||||| | | ||| ||||| ||| || ||||| |||| ||||| | |||
Sbjct 887 TCATCT-CCCAT--CCTACTCTGGAGGTGCTTTATCGATATTCCAAACTCGGACCGCTTC 943
Query 1013 CCAAATTCCAGAACTTGTATCATTTAAAAGC-ACAGATGTGGAGCTCA-T-CAACACACT 1069
| |||||||| ||||| |||||||| || | | | | |||| | | || |||
Sbjct 944 CAAAATTCCATAACTTATATCATTTGCGGGCTGC-GTTCTCCAGCTTATTGTTAC-CAC- 1000
Query 1070 TATTGGAAG-CGTTTCTTGAGAGCTGCCCAAATCTGAAAAACCTCATCTTGGAATATAAT 1128
||||| | | || ||||| | |||||||||||| ||||||||||||||||| ||| |
Sbjct 1001 TATTGTCCGAC-TTCCTTGAAATCTGCCCAAATCTTAAAAACCTCATCTTGGACTATTCT 1059
Query 1129 GTTGAATTGGATCGAGAGCAAGTGGACTTTACCAACGTGCCTCAATGTTTAATATCGACG 1188
||| | ||| | ||||||| | |||||||| || |||||||| |||||||||| ||||
Sbjct 1060 GTTTCAGCGGAGCCAGAGCAAATCGACTTTACAAATGTGCCTCAGTGTTTAATATTGACG 1119
Query 1189 CTGGAGTATGTTGAGATTAAAGAACCGA--ATGA--GA--AAAGTACGATTAAACTAGTG 1242
|||| ||||||||||||||||||| | |||| || ||| | ||||||| | |||
Sbjct 1120 TTGGAATATGTTGAGATTAAAGAACTTACTATGAGGGAGGAAACTGGGATTAAATTGGTG 1179
Query 1243 AACTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTC 1293
||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 1180 AACTACTTTCTTGAGAATTCAGCAGTCCTAAAGAAACTGACTCTAAGTTTC 1230
> Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424
Length=579
Score = 230 bits (124), Expect = 3e-59
Identities = 343/442 (78%), Gaps = 41/442 (9%)
Strand=Plus/Plus
Query 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509
||||| || | |||||||||||||||| ||| | || |||| || || |||||| || ||
Sbjct 10 AACATGTTTC-AGAGCAAGACATTGGTGTCTAT-AAGGCTTGCA-AATGTAGAGCTTGAA 66
Query 510 GAATTCAGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTT 568
||| ||| | ||||||||||||||||||||||||||||| || | || || || ||||
Sbjct 67 -AATAAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATTT 124
Query 569 GTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTG 628
|| |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 125 GTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCTGTTCTTG 184
Query 629 AAGATCTTGAGC-T-GATTAGGCCTTTTGATATTAGGA-CACATAAAGTTCTTCT-GCTT 684
|||||||| | | | | | ||| ||| ||| |||| | | ||| | | | | ||
Sbjct 185 AAGATCTT-ACCGTCG-TAAGGA-TTTAC-TATGAGGATCT-AGAAACTA-TGCCAGTTT 238
Query 685 CTGCGTGTGAGCTCTCAGACTCTGAAAAG-CTTTACC-TTACAT-TTTGCGATCTATAAG 741
||||||||| |||||||||||||| | ||| || ||| || ||| || ||
Sbjct 239 -TGCGTGTGAAATCTCAGACTCTGAAG-GTCTT--CCATTATATGTTTAA-ATGGGGAAT 293
Query 742 GA-T-CGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA-CTCAAGTATATGACTGTT 798
| | | |||| ||||||| ||||||||||||||||| || || ||||| |||| |||
Sbjct 294 GCCTAC-TACATATTTTTCGGTTGAGATTGATGCTCCG-GAACTTAAGTACATGAG-GTT 350
Query 799 GA-ACAGAGTCAATCTGATAGCAT-TGTGGTAAAGAACCTGAGTTCCTTGTTCA-GCATC 855
| | | ||||||||||||| || | |||| |||||||||||||||||||||| | ||
Sbjct 351 TAGAGATAGTCAATCTGATAAAATCT-TGGTTAAGAACCTGAGTTCCTTGTTCAAG-ATA 408
Query 856 GA-CATTGGTACTAAATTTAAT 876
|| | ||| ||| ||||||||
Sbjct 409 GATC-TTGACACTGAATTTAAT 429
> Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426
Length=429
Score = 189 bits (102), Expect = 5e-47
Identities = 162/189 (86%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509
||||| || | ||||||| |||||||| ||||| || |||| || || |||||| || ||
Sbjct 166 AACATGTT-CCAGAGCAAAACATTGGTGTCTTT-AAGGCTTGCA-AATGTAGAGCTTGAA 222
Query 510 GAATTC-AGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATT 567
|| || ||| | ||||||||||||||||||||||||||||| || | || || || |||
Sbjct 223 -AA-TCAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATT 279
Query 568 TGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTT 627
||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 280 TGTTACGGTGAGGATGGTCCTTTGATTGCGGAGAAGCTCATCTCTGGATGTTCTGTTCTT 339
Query 628 GAAGATCTT 636
|||||||||
Sbjct 340 GAAGATCTT 348
> Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1
Length=993
Score = 147 bits (79), Expect = 3e-34
Identities = 192/244 (79%), Gaps = 18/244 (7%)
Strand=Plus/Plus
Query 1143 AGAGCAAGTGGACTTTACCAACGTGCCTCAATGT-TTAATATCGACGCTGGAGTATGTTG 1201
|||| || ||||| |||| || ||||||| ||| | || ||||||||||| |||||||
Sbjct 741 AGAGGAAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTATGTTA 799
Query 1202 AGAT---TAAA--GA-ACCGAATGAGAAAAGTACGATTAAACTAGTGAACTACTTTCTTG 1255
|||| ||| || | |||| ||| ||| | ||||||||||||||| ||||||||||
Sbjct 800 AGATCAACAAACTGATAACGAAGGAGGAAACTGGGATTAAACTAGTGAATTACTTTCTTG 859
Query 1256 AGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTCTCATATTCATCT-TCTA--T-C 1311
||||||||||||||||||||||||| ||| | |||| || |||| ||| | | | |
Sbjct 860 AGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGGAGATTC 919
Query 1312 TA---CCTAAAGAGCTACAAGAAGCTTCTTACATCAACAAAGCTTTCTCCCA-CATGTCA 1367
| || | ||||||||| ||||||||||||||| || |||||||||| || | |||||
Sbjct 920 AAGAGCC-AGAGAGCTACATGAAGCTTCTTACATCCACGAAGCTTTCTCGCAAC-TGTCA 977
Query 1368 AGTT 1371
||||
Sbjct 978 AGTT 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5