BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45000.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359 654 0.0
> Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359
Length=618
Score = 654 bits (354), Expect = 0.0
Identities = 444/487 (91%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 45 ATGGCGGTTCCCTCCATCTACAG-TGAAGAAATCCCACCGCAGCACCAAGTCTTCATCAA 103
||||||||| ||||| ||| | | ||||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGGCGGTTTCCTCCTTCT-CCGACGAAGAAATCCCGCCGCAGCACCAAGTGTTCATCAA 59
Query 104 CTTCAGAGGAGAGGAGCTACGAAAAAGCTTCCTCGGGTTTCT-GTTGAAGGCCATGAGAG 162
|| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 60 CTACAGAGGAGACGAGCTACGAAAAAGCTTCCTCGGGTTTCTCG-TGAAGGCCATGAGAG 118
Query 163 ACGCGAAGATCAACGTCTTTACAGATGAGATCGAAGTCAGAGGTAGAGATATACAGAATC 222
||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||
Sbjct 119 ACGCGAACATCAACGTCTTCACAGATGAGATCGAAGTCAAAGGTAAAGATTTACAGAATC 178
Query 223 TTTTGAGCAGGATTGAGGAATCGAGAGTCGCCATTGCGATCTTATCGAAGAGATACACTG 282
|||| || ||||| |||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 179 TTTTCAGTAGGATCGAGGAATCAAGAGTCGCGGTTGCGATCTTATCCAAGAGATACACTG 238
Query 283 AATCGAGTTGGTGTTTGGATGAATTAGTGAAGATGAAGGAACGGATTGACCAAGACGAGC 342
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct 239 AATCGAGTTGGTGTTTGGATGAATTAGTGAAGATGAAGGAACGGAATGATCAAGACAAGC 298
Query 343 TCGTTGTCATTCCAATCTTCTA-CAGATTGGATGCCACA-AACTGTAAAAGACTCGAGGG 400
||||||||||||| |||||||| | |||||||||| | | |||||||||||||| |||||
Sbjct 299 TCGTTGTCATTCCCATCTTCTATC-GATTGGATGCTA-ATAACTGTAAAAGACTGGAGGG 356
Query 401 ACCTTTCGGCGATAATTTTCGGAATTTGGAGAGAGACTATCGAAGCGAGCCTGAAAGGAT 460
|||||||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||
Sbjct 357 ACCTTTCGGCGATAATTTTCGGAAATTGGAGAGAGAGTATCGGAGTGAGCCTGAGAGGAT 416
Query 461 CAAGAAATGGAAAGAAGCTTTGATCTCTATTCCCCAAAAGATTGGCTTAACTTCGGCAGG 520
|||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 417 CAAGAAATGGAAAGAAGCTTTGATATATATTCCCCAAAAGATTGGCTTGACTTCGGCAGG 476
Query 521 ACACAGG 527
||| |||
Sbjct 477 ACATAGG 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5