BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45010.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494484 jgi|Araly1|494484|fgenesh2_kg.8__300__AT1G64750.1 444 4e-124
Ahg475473 jgi|Araly1|475473|fgenesh2_kg.2__603__AT1G64750.2 412 1e-114
> Ahg494484 jgi|Araly1|494484|fgenesh2_kg.8__300__AT1G64750.1
Length=443
Score = 444 bits (240), Expect = 4e-124
Identities = 375/434 (86%), Gaps = 33/434 (8%)
Strand=Plus/Plus
Query 115 ttttCTCGATCTGGTTGATTTGC-TTAAACATCTGTAACTATGGCGGCAGAACCCAAGGC 173
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 4 TTTTCTCGATCTGGTTGA-TTGCTTTAACCATCTGTAACTATGGCGGCAGAACCCAAGGC 62
Query 174 AGCTGTCGAAGTGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGA 233
|| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63 GGCGGTTGAAGTAGTAAAGGTGGATCTGTTCGAGGACGACGATGAGTTCGAGGAATTTGA 122
Query 234 AATCAACGAAGATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGA 293
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 123 AATCAACGAAGATTCGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGA 182
Query 294 TGACTGGGATGATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGA 353
||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 183 TGACTGGGATGATGATGATGTTAATGACGACTTCTCCCGTCAGTTAAGGAAGGAGCTTGA 242
Query 354 GAATGCTAGTGAGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAG 413
||||| |||||||||||||||||||||||||||| || || ||| ||||||| |||||||
Sbjct 243 GAATGGTAGTGAGAAGAAATGAGGTCCAAGATTGTGA-AA-GGCTGGTCTTCACATTTAG 300
Query 414 GGAACCTTGGCTTTTTTGTTTGAATTGCATCCTTTGGTTTATCGTAGCATGTATCGGTTC 473
| ||| | |||| |||| | | | | | ||||| ||||||||||
Sbjct 301 G-AACATC--CTTTG--GTTT-A-T-G--------G------C-TAGCACGTATCGGTTC 337
Query 474 TCCTTTTCCTTTACACATTATACTCTTCCTTGGATGCAAATTTCT-CGTCTTTGAAGATG 532
|||||||||||| |||||| ||||||| ||||||| ||| || | ||||||||||||
Sbjct 338 TCCTTTTCCTTTGCACATTTTACTCTT----GGATGCAGATTCCTTC-TCTTTGAAGATG 392
Query 533 ATAAATTTGAGCTG 546
|||||||||| |||
Sbjct 393 ATAAATTTGAACTG 406
> Ahg475473 jgi|Araly1|475473|fgenesh2_kg.2__603__AT1G64750.2
Length=524
Score = 412 bits (223), Expect = 1e-114
Identities = 407/489 (83%), Gaps = 40/489 (8%)
Strand=Plus/Plus
Query 71 ACTTGGAGGAATTAATCGAG-TTTGGTGATCTTCTTCTTAGGtttttttCTCGATCTGGT 129
||||||| |||| |||||| ||| || ||||||||||||| |||||||||||||||
Sbjct 48 ACTTGGA-AAATTGATCGAGTTTTCGTCTTCTTCTTCTTAGG---TTTTCTCGATCTGGT 103
Query 130 TGATTTGCTTAAACATCTGTAA-CTATGGCGGCAGAACCCAAGGC--AG-CTGTC-GAAG 184
|| | || | || ||| |||||||| ||||||| ||||| | ||| | ||||
Sbjct 104 TG----G-TT---C--CTTTAACCTATGGCGACAGAACCGAAGGCGGCGACTG-CTGAAG 152
Query 185 TGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 244
|||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 212
Query 245 ATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGATGACTGGGATG 304
|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 213 ATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGATG 272
Query 305 ATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGAGAATGCTAGTG 364
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 273 ATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTATTG 332
Query 365 AGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAGGGAACCTTGGC 424
||||||||||||||| |||||| || |||| ||||| ||| |||| ||| || |||||
Sbjct 333 AGAAGAAATGAGGTCGAAGATTATGA-AAAG-CAGGTTTTCACATTCAGGAAATCTTGG- 389
Query 425 TTTT-TTGTTTGAAT-TGCATCCTTTGGTTTATCGTAGCAT-GTATCGGTTCTCCTTTTC 481
|||| |||| ||| | || | | |||| ||| | | || | ||| || | |||||
Sbjct 390 TTTTCTTGTATGA-TCTGGAAC-TTTG-TTT---G-A--ATTGCATCCTTTGT--TTTTC 438
Query 482 CTTTACACATTATACTCTTCCTTGGATGCAAATTTC-TCGTCTTTGAAGATGATAAATTT 540
||| |||||| |||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct 439 -TTTGCACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATGATAAATTT 497
Query 541 GAGCTGATA 549
|| ||||||
Sbjct 498 GAACTGATA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5