BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45020.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417 1563 0.0
Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803 699 0.0
Ahg356549 jgi|Araly1|356549|fgenesh1_pg.C_scaffold_8000336 680 0.0
Ahg915669 jgi|Araly1|915669|Al_scaffold_0008_420 636 0.0
> Ahg915666 jgi|Araly1|915666|Al_scaffold_0008_417
Length=978
Score = 1563 bits (846), Expect = 0.0
Identities = 935/979 (96%), Gaps = 2/979 (0%)
Strand=Plus/Plus
Query 122 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 60
Query 182 ACATTCCGCAACTTTGTTTCACAAGATCCTGATTCTCAGTTTCCAGCTGAATCAGGAAGA 241
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 61 ACATTCCGCAACTTTGTTTCACAAGATCCTCATTCTCAGTTTCTAGCTGAATCAGGAAGA 120
Query 242 TACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAAG 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAAA 180
Query 302 ATCAAAGGACTTGATGAAGCAATCACCTTCTCGTCGGTTCATGCCATTTGGGGAAGAACC 361
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 181 ATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAACC 240
Query 362 AAGGAAACTGATGATCATAGAGGATGGGTTTTCCCGGATTCGGATACCGAGCTCCCTGGA 421
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 241 AAGGAAACTGATGATCATAGAGGATGGGTTTTCCCAGATTCGGATGCCGAGCTCCCTGGA 300
Query 422 GCTGAGCCTGACTATCTTAATGGTGCCAAAAGTGTGAGAGAACTCTACGAGATTGCTAGC 481
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGCTAGC 360
Query 482 CCAAACTATGAAGGGAAGTACACTGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTGTT 541
|| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 361 CCCAACTATGAGGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGACTGTA 420
Query 542 GTTAACAATGAGAGTTCAGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTATTGCG 601
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTATTGCG 480
Query 602 AAAACCCCGTCACTTGACCTTTATCCTTCTCATCTCAGAGACGTAATCAACGAGACTAAC 661
|||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 481 AAAAACCCGTCACTCGACCTTTATCCTTCTCATCTCAGAGACACGATCGACGAGACTAAC 540
Query 662 GGATGGGTTTTCAACGGAATAAACAACGGTGTTTATAAATGTGGGTTTGCAAGGAAACAA 721
| ||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 541 GAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTAGGAAACAA 600
Query 722 GAACCCTATAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAGTA 781
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 601 GAACCCTACAATGAGGCAGTGAACCAGTTATACGAAGCAGTAGATAGATGTGAGGAAATA 660
Query 782 CTCGGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTC 841
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTC 720
Query 842 GTCACTCTCATAAGATTTGATGAGGTTTA-TGCAGTTCACTTCAAATGCAACAAGAGACT 900
| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 721 GCCACTCTCATAAGATTTGATGAGGTTTACT-CGGTTCACTTCAAATGCAACAAGAGACT 779
Query 901 CTTACGGGAGTACCCGAATATCTTCAACTACATAAAAGACATTTACCAAATACACGGCAT 960
||||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 780 CTTACGGGAATACCCGAATATCTTCAACTACATAAAAGATATCTACCAAATCCAGGGCAT 839
Query 961 GAGTAGCACCGTAAACATGGAACACATTAAGCAACATTACTACGGAAGCCACCCTACGAT 1020
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 GAGTAGCACTGTGAACATGGAACACATTAAGCAACATTACTACGGGAGCCACCCTACGAT 899
Query 1021 AAACCCATTCGGGATCATCCCTCACGGCCCCAATATCGACTACTCTTCGCCTCATGATCG 1080
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 900 AAACCCATTCGGGATCATCCCTCACGGCCCCAATATCGATTACTCTTCGCTTCATGACCG 959
Query 1081 CGACAGATTCTCCTCGTGA 1099
|||||||||||||||||||
Sbjct 960 CGACAGATTCTCCTCGTGA 978
> Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803
Length=1158
Score = 699 bits (378), Expect = 0.0
Identities = 637/760 (84%), Gaps = 26/760 (3%)
Strand=Plus/Plus
Query 121 AATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATC 180
||||||| | |||| |||||||||||||||||| || ||||||||| |||||| |||||
Sbjct 93 AATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATC 152
Query 181 AACATTCCGCAACTTTGTTTCACA-AGATCCTGATTCTCAGTTTCCAGCTGAATCAGGAA 239
|||||| || |||||||||||| | |||| | ||||||| |||||||||||||| || |
Sbjct 153 AACATTTCGAAACTTTGTTTCA-AGAGATTCAAATTCTCAATTTCCAGCTGAATCTGGTA 211
Query 240 GATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAA 299
||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
Sbjct 212 GATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGTCTTTCATACTTGA 271
Query 300 AGATCAAAGGACTTGATGAAGCAATCACCTTCTCGTCGGTTCATGCCATTTGGGGAAGAA 359
|||||||||||||||| || ||||| | ||||||||| || | |||||||||||||||
Sbjct 272 AGATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAA 331
Query 360 CCAAGGAAACTGATGATCATA-GAGGATGGGT-TTTCCCGGA-TTCGGATACCGAGCTCC 416
| || ||||| ||||| |||| | |||||||| ||| || || ||| ||||||||| | |
Sbjct 332 CTAAAGAAACCGATGAGCATATG-GGATGGGTCTTT-CC-GAGTTCAGATACCGAGGTTC 388
Query 417 CTGGAGCTGAGCCTGACT-ATCTTAATGGTGCCAAAAGTGTGAGAGAACTCTACGAGATT 475
|||||||| ||||| | ||||||||||||| || ||||| ||||||||||| ||||||
Sbjct 389 AAGGAGCTGATCCTGA-TCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATT 447
Query 476 GCTAGCCCAAACTATGA-AGGGAAGTACACTGTTCCTGTTCTTTGGGATAAGAAGCTTAA 534
|||||||||||||| | |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 448 GCTAGCCCAAACTA-CACTGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAA 506
Query 535 GACTGTTGTTAACAATGAGAGTTCAGAGATAATCCGGATGTTCAACACTGAGTTCAATGG 594
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 507 AACTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCA 566
Query 595 TATTGCGA-AAACCCCG-TCACTTGACCTTTATCCTTCTCATCTC-AGAGACGTAA--TC 649
||||||| ||| || | || | |||||||| |||||||||||| | || | ||| ||
Sbjct 567 TATTGCGGGAAATCCTGATCTC--GACCTTTACCCTTCTCATCTCCA-AG-C-TAAAATC 621
Query 650 AACGAGACTAACGGATGGGTTTTCAACGGAATAAACAACGGTGTTTATAAATGTGGGTTT 709
| || ||||| | |||| | | ||| || ||||| |||||||| |||| ||| ||||||
Sbjct 622 GATGAAACTAATGAATGGATCTACAATGGGATAAATAACGGTGTCTATAGATGCGGGTTT 681
Query 710 GCAAGGAAACAAGAACCCTATAATGAGGCAGT-GAACCAGTTATATGAAGCAGTAGATAG 768
|||| |||||||| ||| ||| | |||||||| || | ||| ||||||||| |||||||
Sbjct 682 GCAAAGAAACAAGGACCTTATGAGGAGGCAGTTGAGCAAGTG-TATGAAGCATTAGATAG 740
Query 769 ATGTGAGGA-AGTACTCGGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAG 827
||| ||||| | | || |||||||| || |||||||| || |||||||| |||||| |||
Sbjct 741 ATGCGAGGAGATT-CTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAG 799
Query 828 ATATCCGATTATTCGTCACTCTCATAAGATTTGATGAGGT 867
||||| |||| || ||||| || ||||||||||| |||||
Sbjct 800 ATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 839
> Ahg356549 jgi|Araly1|356549|fgenesh1_pg.C_scaffold_8000336
Length=444
Score = 680 bits (368), Expect = 0.0
Identities = 411/432 (95%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 669 TTTTCAACGGAATAAACAACGGTGTTTATAAATGTGGGTTTGCAAGGAAACAAGAACCCT 728
|||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 14 TTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGATTTGCTAGGAAACAAGAACCCT 73
Query 729 ATAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAGTACTCGGAA 788
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 74 ACAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAATACTCGGAA 133
Query 789 AACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTCGTCACTC 848
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AACAACGATACATCTGTGGAAACACTTTCACTGAAGCAGATATCCGATTATTCGTCACTC 193
Query 849 TCATAAGATTTGATGAGGTTTA-TGCAGTTCACTTCAAATGCAACAAGAGACTCTTACGG 907
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 194 TCATAAGATTTGATGAGGTTTACT-CGGTTCACTTCAAATGCAACAAGAGACTCTTACGG 252
Query 908 GAGTACCCGAATATCTTCAACTACATAAAAGACATTTACCAAATACACGGCATGAGTAGC 967
|| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 253 GAATACCCGAATATCTTCAACTACATAAAAGATATCTACCAAATCCAGGGCATGAGTAGC 312
Query 968 ACCGTAAACATGGAACACATTAAGCAACATTACTACGGAAGCCACCCTACGATAAACCCA 1027
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 313 ACTGTGAACATGGAACACATTAAGCAACATTACTACGGGAGCCACCCTACGATAAACCCA 372
Query 1028 TTCGGGATCATCCCTCACGGCCCCAATATCGACTACTCTTCGCCTCATGATCGCGACAGA 1087
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 373 TTCGGGATCATCCCTCACGGCCCCAATATCGATTACTCTTCGCTTCATGACCGCGACAGA 432
Query 1088 TTCTCCTCGTGA 1099
||||||||||||
Sbjct 433 TTCTCCTCGTGA 444
> Ahg915669 jgi|Araly1|915669|Al_scaffold_0008_420
Length=1059
Score = 636 bits (344), Expect = 0.0
Identities = 756/952 (79%), Gaps = 39/952 (4%)
Strand=Plus/Plus
Query 170 AGAACAGCATCAACATTCCGCAACTTTGTTTCACAAGATCCTGATTCTCAGTTTCCAGCT 229
||||| ||| || ||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 46 AGAACCGCAACATCATTCCGCAACTTTGTTTCACAAAAACTTGATTCTCAGTTTCCAGCA 105
Query 230 GAATCAGGAAGATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTT 289
||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 106 GAATCAGCAAGATACCATCTTTATATCTCTTACGCTTGTCCATGGGCTTCTAGATGTCTT 165
Query 290 TCTTA-CTT-AAAGATCAAAGGACTTGATGAAGCAATCACCTTCTCGTCGGTTCATGCCA 347
| | ||| ||| ||||||||||||| ||||||| | ||| ||||| ||||| |||
Sbjct 166 GC-AATCTTGAAA-CTCAAAGGACTTGACAAAGCAATAAGCTTTTCGTCTGTTCA-ACCA 222
Query 348 -TTTGGGGAAGAACCAAGGAAA-CTGATGATCATA-GAGGATGGGTTTTCCCGGATTCGG 404
||| || |||||| |||| | || || |||| | |||||| |||| || ||||| |
Sbjct 223 CTTTTTAAAAAAACCAAAGAAAGC-GACGAGCATATG-GGATGGATTTTTCCAGATTCAG 280
Query 405 ATACCGAGCTCCCTGGAGCTGAGCCTGACT-ATCTTAATGGTGCCAAAAGTGTGAGAGAA 463
|||| ||| | | ||||||||| | ||| | || |||||||||| ||| || ||||||
Sbjct 281 ATACAGAGGTTCTTGGAGCTGAACGTGA-TCATGTTAATGGTGCGAAATCCGTAAGAGAA 339
Query 464 CTCTACGAGATTGCTAGC-CCAAACTATGAAGGG-AAGTACACTGTTCCTGTTCTTTGGG 521
|| || || || |||||| || ||||| | ||| || ||||||||||||||||||||||
Sbjct 340 CTATATGATATCGCTAGCTCC-AACTA-CACGGGAAAATACACTGTTCCTGTTCTTTGGG 397
Query 522 ATAAGAAGCTTAAGACTGTTGTTAACAATGAGAGTTCAGAGATAATCCGGATGTTCAACA 581
||||||||||||||||| | ||||||||||||||||| |||||| |||| |||||||| |
Sbjct 398 ATAAGAAGCTTAAGACTATAGTTAACAATGAGAGTTCTGAGATACTCCGAATGTTCAATA 457
Query 582 CTGAGTTCAATGGTATTGC-GAAAACCCCGTCACTTGACCTTTATCCTTC-TCATCTCAG 639
| ||||||||| | |||| ||||| || || || || ||||| ||| | | ||||| |
Sbjct 458 CCGAGTTCAATCATGTTGCAGAAAATCCT-TCTCTCGATCTTTACCCTCCCT-ATCTCCG 515
Query 640 AGACGTAATCAACGAGACTAACGGATGGGTTTTCAACG-GAATAAACAACGGTGTTTATA 698
|| | ||||| | ||||| |||| |||| | | | | || |||| |||||||||||||
Sbjct 516 AGCCATAATCGATGAGACCAACGAATGGATCCACGATGAGA-TAAATAACGGTGTTTATA 574
Query 699 AATGTGGGTTTGC-AAGGAAA-CAAGAACCCTATAATGAGGCAGTGAACCAGTTATATGA 756
||||||||||||| || ||| |||||| ||||| ||| ||||||||| || || |||||
Sbjct 575 AATGTGGGTTTGCTAA--AAATCAAGAAACCTATGATGTGGCAGTGAAACAATTGTATGA 632
Query 757 AGCAGTAGATAGATGTGAGGAAGTACTCGGAAAACAACGATA-CATCTGCGGAAACACTT 815
||| | || |||| || ||| ||||| |||| ||||| | | | || ||||||| ||
Sbjct 633 TGCATTGGACCGATGCGAAGAAATACTCAGAAACCAACGGTTTCTT-TGTGGAAACATTT 691
Query 816 TCACTGAAGCAGATATCCGATTATTCGTCACTCTCATAAGATTTGATGAGGTTTATGCAG 875
| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 692 TGACTGAACCAGATATCCGATTATTCGTCACTCTCATAAGATTTGACGAGGCTTACGCGG 751
Query 876 TTCA-CTTCAAATGCAACAAGAGACTCTTACGGGAGTACCCGAATATCTTCAACTACATA 934
| | |||||||||| | || |||||| || | || || ||| |||| |||||||
Sbjct 752 TG-ATCTTCAAATGCGATAAAAGACTCGTAAGAGATTATTATAATCTCTTTAACTACACG 810
Query 935 AAAGACATTTACCAAATACACGGCA-TGAGTAGCACCGTAAACATGGAACACATTAAGCA 993
||||| || |||||||| | ||| | |||| || || ||||| ||||| || || |||||
Sbjct 811 AAAGATATCTACCAAAT-CGCGGGACTGAGCAGTACAGTAAAGATGGATCATATAAAGCA 869
Query 994 ACATTACTACGGAAGCCACCCTACGATAAACCCA-TTCGGGATCATCCCTCAC-GGCCCC 1051
| ||||||| |||||| ||| | ||||||| || | ||||||| ||| | || ||
Sbjct 870 AAATTACTATGGAAGCTTTCCTTCTTTAAACCCTCTT-GAGATCATCGCTC-CTGGACCA 927
Query 1052 AATATCGACTACTCTTCGCCTCATGATCG-CGACAGATTCTCCTCGTGAAAG 1102
|| || || ||||||| |||||||||||| | |||||||||| || |||||
Sbjct 928 AACATTGATTACTCTTTGCCTCATGATCGAC-ACAGATTCTCTTCA-GAAAG 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5