BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45030.1
Length=2816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948569 jgi|Araly1|948569|scaffold_800456.1 2959 0.0
Ahg948543 jgi|Araly1|948543|scaffold_800430.1 2340 0.0
Ahg948568 jgi|Araly1|948568|scaffold_800455.1 220 3e-56
Ahg330891 jgi|Araly1|330891|fgenesh1_pm.C_scaffold_8000234 213 6e-54
> Ahg948569 jgi|Araly1|948569|scaffold_800456.1
Length=1886
Score = 2959 bits (1602), Expect = 0.0
Identities = 1792/1884 (95%), Gaps = 12/1884 (1%)
Strand=Plus/Plus
Query 122 TAGTAGAAGGTTAAAGATGGAA-GGAAAGAGATTGGATCTTAGATTTCATCACTC----T 176
|||||||| | ||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 7 TAGTAGAA-G-TAAAGATGGAAGGGAAA-AGATTGGATCTTAGGTTTCATCACTCTGTAT 63
Query 177 -A-CATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAATGTTTACAATC 234
| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 64 CATCATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAACGGCTACAATC 123
Query 235 ATATTAAATTGGCGTCTTCATCGCCGCTTCAACCGTTTCCATCAGGCGCTCAGCATCCTG 294
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 124 ATATTAAATTGGCTTCTTCATCGCCGTTTCAACCGTTTCCATCAGGCGGTCAGCATCCTG 183
Query 295 AAACTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCAAGTAGATTGAATGATTCAG 354
|||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 184 AAACTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCGTGTCGATTGAACGATTCAG 243
Query 355 CGGAAGACAGAGCAAACTATTTTGCAAATCTTCAAAAAGGTGTTTTGCCTGAAAGTTTTG 414
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 244 CAGAAGACAGAGCAAACTATTTTGCAAATCTTCAGAAAGGTGTTTTGCCTGAAACTTTTG 303
Query 415 ATGGTTTACCTACTGGGAAGAAAGCTACTACATTGCTTGAGTTGATGATGATTAGAGCTT 474
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 304 ATGGTTTACCTACAGGGAAGAAAGCTACTACGTTGCTTGAATTGATGATGATTAGAGCTT 363
Query 475 TTCATAGTAAGAATTTAAGGAGGTTTAGTCTCGGTACGGCTATTGGATTTCGGATTCGAC 534
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 364 TTCATAGTAAGAATTTAAGGAGGTTTAGTCTCGGTACAGCTATTGGATTTCGGATTAGAC 423
Query 535 GAGGTGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGC 594
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GAGGCGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGC 483
Query 595 AATGGCTTAATCCTCTTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AATGGCTTAATCCTCTTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGT 543
Query 655 GTGATGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACACCTAAAGAGC 714
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 544 GTGATGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACGCCCAAAGAGC 603
Query 715 AGGTGTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATAGGATCTGGTT 774
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 604 AGGTGTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATCGGATCTGGTT 663
Query 775 CACAGGTGGCTAGCCAAGAGACATATGGAACCTTAGGTGCAATTGTAAAGAGTAAAACTG 834
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 664 CACAGGTGGCTAGCCAAGAGACATATGGAACCTTGGGAGCTATTGTAAAGAGTAAAACCG 723
Query 835 GTATCAGACAGGTTGGTTTCCTAACAAACCGGCATGTTGCAGTTGATTTAGACTACCCAA 894
| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 724 GAATCAGACAAGTTGGCTTCCTTACAAACCGTCATGTTGCAGTTGATTTAGACTACCCAA 783
Query 895 GCCAGAAGATGTTTCATCCATTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAG 954
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GCCAGAAGATGTTTCATCCTTTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAG 843
Query 955 TGGAAAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TGGAAAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTA 903
Query 1015 ACCCAGAAACATTTGTTCGAGCTGATGGAGCCTTCATTCCATTTGCCGAGGACTTCAATA 1074
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 904 ACCCAGAAACATTTGTTCGAGCTGATGGAGCCTTCATACCATTTGCGGAGGACTTCAACA 963
Query 1075 CGAACAATGTAACCACAACTGTCAAAGGGATTGGTGAGATTGGTGATATCCATGCTACTG 1134
||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 964 TGAATAATGTAACCACAACTGTCAAAGGTATTGGTGAGATCGGTAATATCCATGCTACTG 1023
Query 1135 ATCTACAGTCTCCAGTTAACAGTCTAATAGGAAGAAAAGTTGTCAAAGTTGGAAGAAGCT 1194
|||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1024 ATCTACAGTCACCAATCAACAGTCTAATAGGAAGGAAAGTTGTCAAAGTTGGAAGAAGCT 1083
Query 1195 CGGGTTTGACCACTGGGACCATAATGGCTTACGCGTTGGAATACAATGACGAGAAAGGAA 1254
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1084 CTGGTTTGACCACTGGGACCATAATGGCATATGCGTTGGAATACAATGACGAGAAAGGGA 1143
Query 1255 TTTGTTTCCTAACCGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGG 1314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TTTGTTTCCTAACTGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGG 1203
Query 1315 GTGATAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAACGAGAAACCGCGAC 1374
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1204 GTGACAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAATGAGAAACCGCGAC 1263
Query 1375 CTGTTGGAATCATATGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGG 1434
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CTGTTGGAATTATTTGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGG 1323
Query 1435 AACAACCTGAGAATTGGACAAGTGGAGTTGATCTTGGCAGAGTTCTTAATCTTCTTGAGC 1494
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1324 AACAACCTGAGAATTGGACAAGTGGAGTTGATCTTGGAAGAGTTCTTAATCTTCTTGAGC 1383
Query 1495 TTGATCTCATTACTTCCAATGAGGGTCTTCAAGCTGCGGTGCTGGAACAGAGAAACGGTA 1554
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1384 TTGATCTCATTACTTCCAATGAGGGTCTTCAAGCGGCGGTGCTGGAACAGAGAAACGGTA 1443
Query 1555 TTATGTGTGCTGCGG-TTGATTCCACCGTCGTGGAATCATCTCCTGGTGTGTGCAATATT 1613
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1444 TTATGTGTGCTG-GAATTGATTCCACCGTTGTGGAATCATCTCCTGGTGTGTGCAATATT 1502
Query 1614 TCCAGGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTT 1673
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TCGAGGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTT 1562
Query 1674 ATAGAAGACGACAACTCAAACATTCACCCAGAGTTCCAAATAGAAGACGTGTTAGAATCA 1733
| |||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1563 AGAGAAGAAGACAGCTCAAACATTCATCCAGAGTTCCAAATAGAAGATGTGTTAGAATCA 1622
Query 1734 GTGGCTGTGATCGAAGAACACCAGTTCATTCCAAGTTCAAGCAACAACGGATCCGCACTT 1793
| ||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 1623 GCAGCTATGATCGAAGAACACCAGTTCATTCCAAGTTCAAGTAACAACGGATACTCACTC 1682
Query 1794 CATCAGAAACCTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCGCTTAAGACT 1853
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1683 CATCAGAAAATTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCTCTTAAGACT 1742
Query 1854 AGTAGCTCAGGTGATGAGATAGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAA 1913
| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AATAGCTCGGGTGATGAGATTGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAA 1802
Query 1914 AGAAAGCGAACTGATTCACCAGATGGTTCTCAAGAAGATGAAGAGTGAGGGTTATGCTCA 1973
|||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 1803 AGAAAGCGAACTGATTCACCAGATGGTTCTCAAGAACATGAAGAGTCAAGGTTATGCTCA 1862
Query 1974 TGAGACTTCATAACATACCAGAGG 1997
||||||||||||||||||||||||
Sbjct 1863 TGAGACTTCATAACATACCAGAGG 1886
> Ahg948543 jgi|Araly1|948543|scaffold_800430.1
Length=1778
Score = 2340 bits (1267), Expect = 0.0
Identities = 1396/1460 (96%), Gaps = 2/1460 (0%)
Strand=Plus/Plus
Query 539 TGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATG 379
Query 599 GCTTAATCCTCTTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGTGTGA 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GCTTAATCCTCCTCAGTGTTTACCTACAGCCTTGGAGGGTCCTGGAGGAGTTTGGTGTGA 439
Query 659 TGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACACCTAAAGAGCAGGT 718
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 440 TGTAGATGTTGTTGAGTTTCAATATTATGGTGCACCTGCGCAAACGCCCAAAGAGCAGGT 499
Query 719 GTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATAGGATCTGGTTCACA 778
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 500 GTATACAGAGCTTGTTGATGATCTGAGAGGCAGTGGTTCGTCCATCGGATCTGGTTCACA 559
Query 779 GGTGGCTAGCCAAGAGACATATGGAACCTTAGGTGCAATTGTAAAGAGTAAAACTGGTAT 838
|||||||||||||||||||||||||||||| || || ||||||||||||||||| || ||
Sbjct 560 GGTGGCTAGCCAAGAGACATATGGAACCTTGGGAGCTATTGTAAAGAGTAAAACCGGAAT 619
Query 839 CAGACAGGTTGGTTTCCTAACAAACCGGCATGTTGCAGTTGATTTAGACTACCCAAGCCA 898
|||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 CAGACAAGTTGGCTTCCTTACAAACCGTCATGTTGCAGTTGATTTAGACTACCCAAGCCA 679
Query 899 GAAGATGTTTCATCCATTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGA 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GAAGATGTTTCATCCTTTGCCACCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGA 739
Query 959 AAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTAACCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTAACCC 799
Query 1019 AGAAACATTTGTTCGAGCTGATGGAGCCTTCATTCCATTTGCCGAGGACTTCAATACGAA 1078
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||
Sbjct 800 AGAAACATTTGTTCGAGCTGATGGAGCCTTCATACCATTTGCGGAGGACTTCAACATGAA 859
Query 1079 CAATGTAACCACAACTGTCAAAGGGATTGGTGAGATTGGTGATATCCATGCTACTGATCT 1138
||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 860 TAATGTAACCACAACTGTCAAAGGTATTGGTGAGATCGGTAATATCCATGCTACTGATCT 919
Query 1139 ACAGTCTCCAGTTAACAGTCTAATAGGAAGAAAAGTTGTCAAAGTTGGAAGAAGCTCGGG 1198
|||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 920 ACAGTCACCAATCAACAGTCTAATAGGAAGGAAAGTTGTCAAAGTTGGAAGAAGCTCTGG 979
Query 1199 TTTGACCACTGGGACCATAATGGCTTACGCGTTGGAATACAATGACGAGAAAGGAATTTG 1258
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 980 TTTGACCACTGGGACCATAATGGCATATGCGTTGGAATACAATGACGAGAAAGGGATTTG 1039
Query 1259 TTTCCTAACCGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGA 1318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TTTCCTAACTGATTTTCTTGTTGTTGGTGAAAACCAGCAGACTTTTGATCTTGAGGGTGA 1099
Query 1319 TAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAACGAGAAACCGCGACCTGT 1378
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1100 CAGTGGAAGCCTTATTCTGTTGGCTGCGGGCGATGAGAAGAATGAGAAACCGCGACCTGT 1159
Query 1379 TGGAATCATATGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGGAACA 1438
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGGAATTATTTGGGGAGGAACAGCAAACAGGGGACGGTTGAAGCTAAAAGTGGGGGAACA 1219
Query 1439 ACCTGAGAATTGGACAAGTGGAGTTGATCTTGGCAGAGTTCTTAATCTTCTTGAGCTTGA 1498
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1220 ACCTGAGAATTGGACAAGTGGAGTTGATCTTGGAAGAGTTCTTAATCTTCTTGAGCTTGA 1279
Query 1499 TCTCATTACTTCCAATGAGGGTCTTCAAGCTGCGGTGCTGGAACAGAGAAACGGTATTAT 1558
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1280 TCTCATTACTTCCAATGAGGGTCTTCAAGCGGCGGTGCTGGAACAGAGAAACAGTATTAT 1339
Query 1559 GTGTGCTGCGG-TTGATTCCACCGTCGTGGAATCATCTCCTGGTGTGTGCAATATTTCCA 1617
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1340 GTGTGCTG-GAATTGATTCCACCGTTGTGGAATCATCTCCTGGTGTGTGCAATATTTCGA 1398
Query 1618 GGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTTATAG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1399 GGTGTAAAACGGGTGAGAACTTTGAGCCTATTAACTTGAATGTCCAGCAAGTTCTTAGAG 1458
Query 1678 AAGACGACAACTCAAACATTCACCCAGAGTTCCAAATAGAAGACGTGTTAGAATCAGTGG 1737
|||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 1459 AAGAAGACAGCTCAAACATTCATCCAGAGTTCCAAATAGAAGATGTGTTAGAATCAGCAG 1518
Query 1738 CTGTGATCGAAGAACACCAGTTCATTCCAAGTTCAAGCAACAACGGATCCGCACTTCATC 1797
|| |||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||
Sbjct 1519 CTATGATCGAAGAACACCAGTTCATTCCAAGTTCAAGTAACAACGGATACTCACTCCATC 1578
Query 1798 AGAAACCTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCGCTTAAGACTAGTA 1857
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1579 AGAAAATTAATGGACCAGAGAATCTCGAATCCAAGAACCTGTCTTCTCTTAAGACTAATA 1638
Query 1858 GCTCAGGTGATGAGATAGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAAAGAA 1917
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 GCTCGGGTGATGAGATTGGCTTTTCTTTGCAGTTAGGTGAGTCAGATACAAAGAAAAGAA 1698
Query 1918 AGCGAACTGATTCACCAGATGGTTCTCAAGAAGATGAAGAGTGAGGGTTATGCTCATGAG 1977
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 1699 AGCGAACTGATTCACCAGATGGTTCTCAAGAACATGAAGAGTCAAGGTTATGCTCATGAG 1758
Query 1978 ACTTCATAACATACCAGAGG 1997
||||||||||||||||||||
Sbjct 1759 ACTTCATAACATACCAGAGG 1778
Score = 468 bits (253), Expect = 1e-130
Identities = 293/311 (94%), Gaps = 7/311 (2%)
Strand=Plus/Plus
Query 122 TAGTAGAAGGTTAAAGATGGAA-GGAAAGAGATTGGATCTTAGATTTCATCACTC--TA- 177
|||||||| | ||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 7 TAGTAGAA-G-TAAAGATGGAAGGGAAA-AGATTGGATCTTAGGTTTCATCACTCTGTAT 63
Query 178 CATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAATGTTTACAATCATA 237
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 64 CATCATCACAATCTGTGGAATCTGCTGCATTGGATTTGGATAAAAACGGCTACAATCATA 123
Query 238 TTAAATTGGCGTCTTCATCGCCGCTTCAACCGTTTCCATCAGGCGCTCAGCATCCTGAAA 297
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 124 TTAAATTGGCTTCTTCATCGCCGCTTCAACCGTTTCCATCAGGCGGTCAGCATCCTGAAA 183
Query 298 CTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCAAGTAGATTGAATGATTCAGCGG 357
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 184 CTAGTGCTGCTGCTGCTTACTTCTCTTGGCCTACTTCAAGTCGATTGAACGATTCAGCAG 243
Query 358 AAGACAGAGCAAACTATTTTGCAAATCTTCAAAAAGGTGTTTTGCCTGAAAGTTTTGATG 417
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 244 AAGACAGAGCAAACTATTTTGCAAATCTTCAGAAAGGTGTTTTGCCTGAAACTTTTGATG 303
Query 418 GTTTACCTACT 428
|||||||||||
Sbjct 304 GTTTACCTACT 314
> Ahg948568 jgi|Araly1|948568|scaffold_800455.1
Length=574
Score = 220 bits (119), Expect = 3e-56
Identities = 135/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 2282 CTAGTCGCTAGTCCGTAGATACAGTTGGCCAGCCTTGGTCAGCTTGAAACTTTACAAATT 2341
||| ||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct 559 CTACTCGCTAGTCGGTAGATACATTTGGCCAACCTTTGTCAGCTTGAAACTTTACAAATT 500
Query 2342 CAGCGAGAAGCTTGATTTCTTCGTCCTGCAACCGCGGTCCAAAGGTACATTGTCCTCTCG 2401
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 499 CAGCCAGAAGCTTGATTTCTTCGTCTTGCAACCGCGGTCCAAAGGTACATTGTCCTCTCG 440
Query 2402 GTGTGCATTTCTCACCAAATCCC 2424
||||||||||||| |||||||||
Sbjct 439 GTGTGCATTTCTCTCCAAATCCC 417
Score = 167 bits (90), Expect = 5e-40
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 2716 GGTTGAATAATGTTTCCACCTGTATCATGACACCCGATACAAGCTCTATTAAACAATGTA 2775
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 320 GGTTGAATAATGTTTCCACCTGTATCGTGACACCCGATACAAGCTCTATTAAACAATGTT 261
Query 2776 GCTCCTCTCTGTATATCCAAAGTCTGCCCAAGAGATTCT 2814
||||||||||||||||||||||||||||| |||||||||
Sbjct 260 GCTCCTCTCTGTATATCCAAAGTCTGCCCTAGAGATTCT 222
Score = 54.7 bits (29), Expect = 4e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Minus
Query 2596 CTTTCGAGGTCTTTTGTGAAAAGCGTTGC-ACC 2627
||||||||||||||||||||||||||||| |||
Sbjct 353 CTTTCGAGGTCTTTTGTGAAAAGCGTTGCGACC 321
> Ahg330891 jgi|Araly1|330891|fgenesh1_pm.C_scaffold_8000234
Length=531
Score = 213 bits (115), Expect = 6e-54
Identities = 129/136 (95%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 2289 CTAGTCCGTAGATACAGTTGGCCAGCCTTGGTCAGCTTGAAACTTTACAAATTCAGCGAG 2348
|||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 531 CTAGTCGGTAGATACATTTGGCCAACCTTTGTCAGCTTGAAACTTTACAAATTCAGCCAG 472
Query 2349 AAGCTTGATTTCTTCGTCCTGCAACCGCGGTCCAAAGGTACATTGTCCTCTCGGTGTGCA 2408
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AAGCTTGATTTCTTCGTCTTGCAACCGCGGTCCAAAGGTACATTGTCCTCTCGGTGTGCA 412
Query 2409 TTTCTCACCAAATCCC 2424
|||||| |||||||||
Sbjct 411 TTTCTCTCCAAATCCC 396
Score = 167 bits (90), Expect = 5e-40
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 2716 GGTTGAATAATGTTTCCACCTGTATCATGACACCCGATACAAGCTCTATTAAACAATGTA 2775
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTTGAATAATATTTCCACCTGTATCATGACACCCGATACAAGCTCTATTAAACAATGTT 240
Query 2776 GCTCCTCTCTGTATATCCAAAGTCTGCCCAAGAGATTCT 2814
||||||||||||||||||||||||||||| |||||||||
Sbjct 239 GCTCCTCTCTGTATATCCAAAGTCTGCCCTAGAGATTCT 201
Score = 56.5 bits (30), Expect = 1e-06
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 2596 CTTTCGAGGTCTTTTGTGAAAAGCGTTGCACCC 2628
||||||||||||||||||||||||||||| |||
Sbjct 332 CTTTCGAGGTCTTTTGTGAAAAGCGTTGCGCCC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106271783550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5