BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45070.1 Length=1403 Score E Sequences producing significant alignments: (Bits) Value Ahg497225 jgi|Araly1|497225|fgenesh2_kg.65__2__AT5G45070.1 1587 0.0 Ahg494476 jgi|Araly1|494476|fgenesh2_kg.8__292__AT5G45070.1 1554 0.0 Ahg948552 jgi|Araly1|948552|scaffold_800439.1 309 4e-83 > Ahg497225 jgi|Araly1|497225|fgenesh2_kg.65__2__AT5G45070.1 Length=1234 Score = 1587 bits (859), Expect = 0.0 Identities = 1099/1215 (90%), Gaps = 15/1215 (1%) Strand=Plus/Plus Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116 |||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 26 AAAAAGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 85 Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176 ||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 86 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 145 Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236 |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 146 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 205 Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296 ||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||| Sbjct 206 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 265 Query 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356 ||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||| Sbjct 266 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 325 Query 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416 |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| Sbjct 326 AGGCGGTCTCAATGTGATTCCCATCTTTTACAAACTTGCACCTTCCTCCGTGGAAGAACT 385 Query 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475 ||||||||| |||||||||| ||||||||||||||| | | ||||| ||| | || |||| Sbjct 386 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATACAAAGACGAGCCTG 444 Query 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535 ||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| | Sbjct 445 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTATATTCCTAAAATAAAGGGCCTGACCT 504 Query 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595 || |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct 505 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATTTATGAAACGATTTTCGAGATTC 564 Query 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654 | | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| | Sbjct 565 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 623 Query 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714 ||||||||| |||||||||||||||||||| |||| ||||| |||| |||||||||||| Sbjct 624 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 683 Query 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 684 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 743 Query 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833 |||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 744 ATTAACACTCACAGC-TTGATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 802 Query 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893 |||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| Sbjct 803 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTAGATGATACATCTTTGGGATGGAA 862 Query 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953 |||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| ||||| Sbjct 863 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 922 Query 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012 ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 923 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 981 Query 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071 | |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| | Sbjct 982 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1039 Query 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130 | || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1040 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1099 Query 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTGTT--AACTATATTTATATAAC 1188 || |||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||| Sbjct 1100 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGTTTTAACTATATTTATAGAAC 1159 Query 1189 CTCTATTA-TGGTTTAAAGTTTGTAAttttttttttCCTGTAAGTCAGAGTCTGTACTTT 1247 || ||| |||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1160 TTCAATTTCTGGTTTAAAGTTTGTACTTTTTTTTTTTTTGTAAGTCAGAGTCTGTACTTT 1219 Query 1248 CTTGTTTTCGTATTG 1262 |||||||| || ||| Sbjct 1220 CTTGTTTTTGTTTTG 1234 > Ahg494476 jgi|Araly1|494476|fgenesh2_kg.8__292__AT5G45070.1 Length=1231 Score = 1554 bits (841), Expect = 0.0 Identities = 1086/1203 (90%), Gaps = 21/1203 (2%) Strand=Plus/Plus Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116 |||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 35 AAAAAGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 94 Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176 ||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 95 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 154 Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236 |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 155 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 214 Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296 ||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||| Sbjct 215 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 274 Query 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356 ||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||| Sbjct 275 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 334 Query 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416 |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 335 AGGCGGTCTCAATGTGATTCCCATTTTCTACAAACTTGCACCTTCCTCCGTGGAAGAACT 394 Query 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475 ||||||||| |||||||||| ||||||||||||||| | | ||||||||| | || |||| Sbjct 395 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATATAAAGACGAGCCTG 453 Query 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535 ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| | Sbjct 454 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTCTATTCCTAAAATAAAGGGCCTGACCT 513 Query 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595 || |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 514 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAACGATTTTCGAGATTC 573 Query 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654 | | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| | Sbjct 574 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 632 Query 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714 ||||||||| |||||||||||||||||||| |||| ||||| |||| |||||||||||| Sbjct 633 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 692 Query 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 693 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 752 Query 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833 |||||||||||| || || |||||||||| ||||||||||||||||||||||||||||| Sbjct 753 ATTAACACTCACAGC-TTAATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 811 Query 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893 |||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||| Sbjct 812 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTACATGATACATCTTTGGGATGGAA 871 Query 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953 |||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| ||||| Sbjct 872 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 931 Query 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012 ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 932 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 990 Query 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071 | |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| | Sbjct 991 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1048 Query 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130 | || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1049 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1108 Query 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTG-TT-AACTATATTTATATAAC 1188 || |||||||||| |||||||||||||||| |||||||| || |||||| |||||||||| Sbjct 1109 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGCTTTAACTATGTTTATATAAC 1168 Query 1189 CTC-TATTATGGTTTAAAGTTTGTAAt-tttttttttCCT-----GTAAGTCAGAGTCTG 1241 || | ||||||||||||||||||| | ||||||||| | ||||||||||||||| Sbjct 1169 TTCATTTTATGGTTTAAAGTTTGTACTCTTTTTTTTTTTTTTTTTGTAAGTCAGAGTCTG 1228 Query 1242 TAC 1244 ||| Sbjct 1229 TAC 1231 > Ahg948552 jgi|Araly1|948552|scaffold_800439.1 Length=535 Score = 309 bits (167), Expect = 4e-83 Identities = 198/213 (93%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 13 AAAAAGCTCTC--ATGGCTGCTTCTTCTTCTGTGAGACAAACCCCAACGGGACCTCAAGT 70 Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176 ||||||||| ||||| ||||||||| |||| ||||||||| | ||||||||||||||||| Sbjct 71 GTTCATCAATTTCCGTGGAAAAGATGTGCGCAACGGCTTCATTAGCTTTCTTGAGCCTGC 130 Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236 |||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 131 CATGAGAGAAGCTAGTATAAACGTCTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 190 Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAG 269 ||||||||||||||| ||||||||||||||||| Sbjct 191 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAG 223 Score = 257 bits (139), Expect = 1e-67 Identities = 200/229 (87%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 323 ATGAGCTGGCCGAGATCAAGGACTGCATTAATCAAGGCGGTCTCAATGCGATTCCCATCT 382 ||||||||||| || ||||||| |||||| |||||||||||||||||| ||||||||||| Sbjct 232 ATGAGCTGGCCCAGGTCAAGGATTGCATTTATCAAGGCGGTCTCAATGTGATTCCCATCT 291 Query 383 TCTACAAACTTGCACCTTCCTCCGTGTTAGAACTCAAAGGAGGTTTTGGCGATACTTTCA 442 |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| Sbjct 292 TCTACAAACTTGCACCTTCCTCAGTGGAAGAACTCAAAGGAGGCTTTGGCGATACTTTCA 351 Query 443 GGGTTCTAAAG-GAGAAATATAAAAATGATCC-TGAAAGAACTCAAAAATGGCAAGAAGC 500 ||||||||||| | ||||||||| | || || ||||||||||||||||||| ||||||| Sbjct 352 GGGTTCTAAAGCGC-AAATATAAACACGA-CCATGAAAGAACTCAAAAATGGGAAGAAGC 409 Query 501 TTTAGAGTCTATTCCTAAACTAAAGGGCC-TGAGATTGGCAGAAAAAAG 548 |||| | | |||||||||| |||||| | ||| || ||||| |||| Sbjct 410 TTTACAATTTATTCCTAAAA-AAAGGGGCATGACCTTTTCAGAACAAAG 457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52450267365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5