BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45070.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497225 jgi|Araly1|497225|fgenesh2_kg.65__2__AT5G45070.1 1587 0.0
Ahg494476 jgi|Araly1|494476|fgenesh2_kg.8__292__AT5G45070.1 1554 0.0
Ahg948552 jgi|Araly1|948552|scaffold_800439.1 309 4e-83
> Ahg497225 jgi|Araly1|497225|fgenesh2_kg.65__2__AT5G45070.1
Length=1234
Score = 1587 bits (859), Expect = 0.0
Identities = 1099/1215 (90%), Gaps = 15/1215 (1%)
Strand=Plus/Plus
Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116
|||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 26 AAAAAGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 85
Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 86 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 145
Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 146 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 205
Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296
||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 206 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 265
Query 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356
||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 266 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 325
Query 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 326 AGGCGGTCTCAATGTGATTCCCATCTTTTACAAACTTGCACCTTCCTCCGTGGAAGAACT 385
Query 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475
||||||||| |||||||||| ||||||||||||||| | | ||||| ||| | || ||||
Sbjct 386 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATACAAAGACGAGCCTG 444
Query 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535
||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| |
Sbjct 445 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTATATTCCTAAAATAAAGGGCCTGACCT 504
Query 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595
|| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 505 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATTTATGAAACGATTTTCGAGATTC 564
Query 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654
| | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 565 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 623
Query 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714
||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||||||||
Sbjct 624 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 683
Query 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 684 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 743
Query 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833
|||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 744 ATTAACACTCACAGC-TTGATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 802
Query 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||
Sbjct 803 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTAGATGATACATCTTTGGGATGGAA 862
Query 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953
|||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| |||||
Sbjct 863 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 922
Query 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012
||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 923 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 981
Query 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071
| |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| |
Sbjct 982 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1039
Query 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130
| || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1040 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1099
Query 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTGTT--AACTATATTTATATAAC 1188
|| |||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 1100 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGTTTTAACTATATTTATAGAAC 1159
Query 1189 CTCTATTA-TGGTTTAAAGTTTGTAAttttttttttCCTGTAAGTCAGAGTCTGTACTTT 1247
|| ||| |||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1160 TTCAATTTCTGGTTTAAAGTTTGTACTTTTTTTTTTTTTGTAAGTCAGAGTCTGTACTTT 1219
Query 1248 CTTGTTTTCGTATTG 1262
|||||||| || |||
Sbjct 1220 CTTGTTTTTGTTTTG 1234
> Ahg494476 jgi|Araly1|494476|fgenesh2_kg.8__292__AT5G45070.1
Length=1231
Score = 1554 bits (841), Expect = 0.0
Identities = 1086/1203 (90%), Gaps = 21/1203 (2%)
Strand=Plus/Plus
Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116
|||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 35 AAAAAGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 94
Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 95 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 154
Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 155 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 214
Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296
||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 215 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 274
Query 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356
||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 275 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 334
Query 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 335 AGGCGGTCTCAATGTGATTCCCATTTTCTACAAACTTGCACCTTCCTCCGTGGAAGAACT 394
Query 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475
||||||||| |||||||||| ||||||||||||||| | | ||||||||| | || ||||
Sbjct 395 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATATAAAGACGAGCCTG 453
Query 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |
Sbjct 454 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTCTATTCCTAAAATAAAGGGCCTGACCT 513
Query 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 514 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAACGATTTTCGAGATTC 573
Query 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654
| | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 574 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 632
Query 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714
||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||||||||
Sbjct 633 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 692
Query 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 752
Query 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833
|||||||||||| || || |||||||||| |||||||||||||||||||||||||||||
Sbjct 753 ATTAACACTCACAGC-TTAATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 811
Query 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893
|||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| |||||
Sbjct 812 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTACATGATACATCTTTGGGATGGAA 871
Query 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953
|||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| |||||
Sbjct 872 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 931
Query 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012
||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 932 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 990
Query 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071
| |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| |
Sbjct 991 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1048
Query 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130
| || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1049 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1108
Query 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTG-TT-AACTATATTTATATAAC 1188
|| |||||||||| |||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 1109 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGCTTTAACTATGTTTATATAAC 1168
Query 1189 CTC-TATTATGGTTTAAAGTTTGTAAt-tttttttttCCT-----GTAAGTCAGAGTCTG 1241
|| | ||||||||||||||||||| | ||||||||| | |||||||||||||||
Sbjct 1169 TTCATTTTATGGTTTAAAGTTTGTACTCTTTTTTTTTTTTTTTTTGTAAGTCAGAGTCTG 1228
Query 1242 TAC 1244
|||
Sbjct 1229 TAC 1231
> Ahg948552 jgi|Araly1|948552|scaffold_800439.1
Length=535
Score = 309 bits (167), Expect = 4e-83
Identities = 198/213 (93%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 57 aaaaagCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 13 AAAAAGCTCTC--ATGGCTGCTTCTTCTTCTGTGAGACAAACCCCAACGGGACCTCAAGT 70
Query 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176
||||||||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct 71 GTTCATCAATTTCCGTGGAAAAGATGTGCGCAACGGCTTCATTAGCTTTCTTGAGCCTGC 130
Query 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 131 CATGAGAGAAGCTAGTATAAACGTCTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 190
Query 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAG 269
||||||||||||||| |||||||||||||||||
Sbjct 191 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAG 223
Score = 257 bits (139), Expect = 1e-67
Identities = 200/229 (87%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 323 ATGAGCTGGCCGAGATCAAGGACTGCATTAATCAAGGCGGTCTCAATGCGATTCCCATCT 382
||||||||||| || ||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 232 ATGAGCTGGCCCAGGTCAAGGATTGCATTTATCAAGGCGGTCTCAATGTGATTCCCATCT 291
Query 383 TCTACAAACTTGCACCTTCCTCCGTGTTAGAACTCAAAGGAGGTTTTGGCGATACTTTCA 442
|||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 292 TCTACAAACTTGCACCTTCCTCAGTGGAAGAACTCAAAGGAGGCTTTGGCGATACTTTCA 351
Query 443 GGGTTCTAAAG-GAGAAATATAAAAATGATCC-TGAAAGAACTCAAAAATGGCAAGAAGC 500
||||||||||| | ||||||||| | || || ||||||||||||||||||| |||||||
Sbjct 352 GGGTTCTAAAGCGC-AAATATAAACACGA-CCATGAAAGAACTCAAAAATGGGAAGAAGC 409
Query 501 TTTAGAGTCTATTCCTAAACTAAAGGGCC-TGAGATTGGCAGAAAAAAG 548
|||| | | |||||||||| |||||| | ||| || ||||| ||||
Sbjct 410 TTTACAATTTATTCCTAAAA-AAAGGGGCATGACCTTTTCAGAACAAAG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5