BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45080.1 Length=1179 Score E Sequences producing significant alignments: (Bits) Value Ahg887495 jgi|Araly1|887495|Al_scaffold_0065_3 1620 0.0 Ahg915655 jgi|Araly1|915655|Al_scaffold_0008_406 1513 0.0 Ahg915653 jgi|Araly1|915653|Al_scaffold_0008_404 676 0.0 Ahg952380 jgi|Araly1|952380|scaffold_6500005.1 394 8e-109 > Ahg887495 jgi|Araly1|887495|Al_scaffold_0065_3 Length=1182 Score = 1620 bits (877), Expect = 0.0 Identities = 1086/1187 (91%), Gaps = 13/1187 (1%) Strand=Plus/Plus Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60 Query 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119 |||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| Sbjct 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCCATCTTGACCCTGCCTTGAGAGA 119 Query 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178 |||||| |||||||||||||||||||| | |||||||||||||| |||| ||| ||||| Sbjct 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGTTTTTGGGCACAGATTTGGTTAACC 178 Query 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238 | |||| |||||| |||||||| ||| ||||||||||||| ||||| | ||||||||||| Sbjct 179 TTTTGAAGAGGATAGAAGAGTCAGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238 Query 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298 | ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 239 GTTCGTATAGGTGCTTGGATGAGCTGGCCAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298 Query 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCTGTAAAATTTCTTGAAGGAA 358 ||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||| Sbjct 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTTGTGAAATATCTTAAAGGAA 358 Query 359 AATTTGGCGATAATTTCAGGGCTCTGGAACGCAATAATCGACACATGCTACCAATAACTC 418 | ||||||||||||||||||| || ||||||||||||| |||||||| || || ||||| Sbjct 359 ATTTTGGCGATAATTTCAGGGAACTAGAACGCAATAATCTACACATGCAACAAAGAACTC 418 Query 419 AGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGAAC 478 ||||||||||| |||| |||| ||||||||||| ||||| ||| ||||| ||| |||| Sbjct 419 AGAAATGGAAGAAAGCTTTAGTGTCTATCCCGGAATCAAAAGGGATGCCAAGGGCAGAAC 478 Query 479 AAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAATTAC 538 ||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||| Sbjct 479 AAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAGAATTAC 538 Query 539 TGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGTTTCC 597 |||| ||||||||| ||||||||||| |||||||||||| || ||| || ||||||| Sbjct 539 TGGATTATATGGCTGCCAGAAGAAACAAAGAAATAGAAGCG-AATCGTCAAGGAGTTTCC 597 Query 598 ATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT-CC- 655 ||||||||| ||| |||||| |||| ||||||||||||||||||||||||| |||| || Sbjct 598 ATCGTCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCGTGGTCCCT 657 Query 656 -CTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCATG 714 |||||||| ||| |||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct 658 GCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCGTGGTCCCGTCCATG 717 Query 715 GTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGAG 773 |||| |||||||||||||| | ||||| |||| ||| |||||||||| |||||||||||| Sbjct 718 GTCCTTGCAAGGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAAGATGGACTTGGAG 776 Query 774 TACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTTA 833 ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| Sbjct 777 TACTATCAACGAGGCACCAAACTCTGCGGAAATTGAGATTGCGACGTCGAATAAACTTTA 836 Query 834 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACGA 893 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 837 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACGA 896 Query 894 GGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAATC 952 ||||||||||||||| |||||||||| |||||||||||||||||| | |||||||| || Sbjct 897 GGCTGTATTCGTAGTGAAATTAGAAATTAATGCTAGTGGATGGGA-TATACCAGTGACTC 955 Query 953 TAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAACT 1012 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 956 TAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAACT 1015 Query 1013 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1075 Query 1073 CAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAGA 1132 ||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct 1076 CAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAGA 1135 Query 1133 AAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179 ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1136 AAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1182 > Ahg915655 jgi|Araly1|915655|Al_scaffold_0008_406 Length=1173 Score = 1513 bits (819), Expect = 0.0 Identities = 1069/1188 (90%), Gaps = 24/1188 (2%) Strand=Plus/Plus Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60 Query 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119 |||||||||||||||||||| | |||||||||||||| ||||| |||||| |||||||| Sbjct 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCTATCTTGACCCTGCTTTGAGAGA 119 Query 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178 |||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| | ||| Sbjct 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGCTTTTGGGCTCAGATTTGGTTCACC 178 Query 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238 |||||| |||||| |||||||| ||| ||||||||||||| ||||| | ||||||||||| Sbjct 179 TATTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238 Query 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298 | ||| || |||||||| | |||||||| |||||||||||| |||||||||||||||||| Sbjct 239 GTTCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298 Query 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCT-GTAAAATTTCTTG-AAGG 356 ||| ||||||||||||||||||||||||||||||||||| | || |||| || || |||| Sbjct 299 TCAAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-TCGTGAAATATC-TGAAAGG 356 Query 357 AAAATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACA-CATGCTACCAATA 414 ||| ||||||||| ||||||||| || | ||||||| | |||| || || | || | Sbjct 357 AAAGTTTGGCGATCATTTCAGGGATC-AAATACGCAATCTTAGACACCA-GCCAGAAAGA 414 Query 415 ACTCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCT 474 |||||||||||| |||| || ||| |||||| || | ||||||||||||||| || || Sbjct 415 ACTCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCA 474 Query 475 GAACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAA 534 | |||||||||| ||||||||| |||||||||| |||||||||||||||||||||| || Sbjct 475 GCCCAAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAAAA 534 Query 535 TTACTGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGT 593 | |||||| |||||||||||||||| | |||||||||||| || ||| || ||| Sbjct 535 TCACTGGATTATATGGCTGTGAGAAG-----A-GAAATAGAAGCG-AATCGTCAAGGAGT 587 Query 594 TTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT 653 ||||||| ||||| ||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 588 TTCCATCATCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCATGGT 647 Query 654 CCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCAT 713 |||||||||| ||| |||||||||||||||||| ||||| ||||| ||||||| ||||| Sbjct 648 CCCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCCTGGTCCCGTCCAT 707 Query 714 GGTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGA 772 ||||| ||||| |||||||| | ||||| |||| ||| ||||||||| ||||||||||| Sbjct 708 GGTCCTTGCAAAGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAGTATGGACTTGGA 766 Query 773 GTACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTT 832 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 767 GTACTATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTCGAATAAACTTT 826 Query 833 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACG 892 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 827 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACG 886 Query 893 AGGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAAT 951 |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct 887 AGGCTGTATTCGTAGTGAAATTAGAAAATAATGCTAGTGGATGGGAG-ATACCAGTGACT 945 Query 952 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAAC 1011 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 946 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAAC 1005 Query 1012 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1065 Query 1072 CCAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAG 1131 |||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||| Sbjct 1066 CCAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAG 1125 Query 1132 AAAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179 |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1126 AAAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1173 > Ahg915653 jgi|Araly1|915653|Al_scaffold_0008_404 Length=1245 Score = 676 bits (366), Expect = 0.0 Identities = 601/713 (84%), Gaps = 22/713 (3%) Strand=Plus/Plus Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60 |||||| ||||||| | || ||||||||| ||||||||||| ||||| |||||||||||| Sbjct 1 ATGGCTACTTCTTCTTTGGCTGTGAAACCAACCCCAACGGGACCTCAAGTGTTCATATGC 60 Query 61 TTCCGGGGAGCAGATGTCCGCAAACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGAA 120 |||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| || Sbjct 61 TTCCGGGGGGCAGGTGTCCGTAAACACTTCATAAGCTTTCTTGACCCTGCCTTGAGAAAA 120 Query 121 GCGAACATAAACGTCTTCATAGATGAGAACGAGTTTTTGGGCTCAGAAATGGCTAACCTA 180 ||||| ||||||||||||||||||||| |||||| |||||||||||| ||| |||| || Sbjct 121 GCGAATATAAACGTCTTCATAGATGAGGACGAGTATTTGGGCTCAGATTTGGTTAACTTA 180 Query 181 TTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAAGA 240 |||| |||||| |||||||| ||| ||||||||||||| ||||| | |||||||||||| Sbjct 181 TTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAAGT 240 Query 241 TCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTCTC 300 ||| || |||||||| | |||||||| |||||||||||| |||||||||||||||||||| Sbjct 241 TCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTCTC 300 Query 301 ATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-CTGTAAAATTTCTTGAA-GGAA 358 | ||||||||||||||||||||||||||||||||||| | || |||| ||| ||| |||| Sbjct 301 AAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTC-GTGAAATATCT-GAAAGGAA 358 Query 359 AATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACAC-ATGCTACCAATAAC 416 | ||||||||| ||||||||| || | ||||||| | ||||| | || | || ||| Sbjct 359 AGTTTGGCGATCATTTCAGGGATCAA-ATACGCAATCTTAGACACCA-GCCAGAAAGAAC 416 Query 417 TCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGA 476 |||||||||| |||| || ||| |||||| || | ||||||||||||||| || || | Sbjct 417 TCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCAGC 476 Query 477 ACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCA-ACAAT 535 ||||| || ||||||| |||||||||| ||||||||||||||||||||| | | | Sbjct 477 CCAAAG-GA-----CCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAGAGA-T 529 Query 536 TACTGGAGAATATGGCTGTGAGAAG-AAAC-AATGAAATAGAAGCGCAA-CGTAAATTAG 592 | ||||| ||||||| || | ||| |||| || |||| ||||||| || | | | || Sbjct 530 TGGTGGAGCATATGGCCGTCA-AAGGAAACCAA-GAAACAGAAGCG-AATCTTCCAGGAG 586 Query 593 TTTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGG 652 |||||||||||| ||| |||||| ||| ||||||||||| ||||||||||||||||| Sbjct 587 GTTCCATCGTCCCAGCAATGAAACCAAAAAGAGAAGCGAATAGTCAAGGAGGTTCCATGG 646 Query 653 TCCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTC 705 ||| ||||| ||||||||||| |||||||||||| ||||| ||| ||||||| Sbjct 647 TCCTTGCAATGAAGCCAGAAACAGAAGCGAGTCATCAAGGAGGTTTCGTGGTC 699 > Ahg952380 jgi|Araly1|952380|scaffold_6500005.1 Length=1166 Score = 394 bits (213), Expect = 8e-109 Identities = 326/379 (86%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 805 ATTGAAATTGCGACGTTGAATAAAGTTTACTGGCTTAAAATAGTGGGAACAAT-AACTAC 863 ||||| |||| |||| |||| ||||||||||||||||||||||| |||||| | || || Sbjct 777 ATTGATATTGTGACGATGAAAAAAGTTTACTGGCTTAAAATAGTCGGAACATTCAA-AAC 835 Query 864 GGAGAATCTAACACCAGGAGCTAAGTACGAGGCTGTATTCGTAGTCAAATTAGAAA-ATA 922 || | |||||||||||||| | ||||| |||| ||| || ||||| |||||| ||| ||| Sbjct 836 GGGGGATCTAACACCAGGAACAAAGTATGAGGTTGTGTTTGTAGTGAAATTA-AAAGATA 894 Query 923 ATGCTAGTGGATGGGAGCAACCAGTGAATCTAAAGCTGAAGGTGGTACAACACGATGGGG 982 |||| | |||||||||| ||||||||| ||| |||||||||||| |||| ||| |||| | Sbjct 895 ATGCAATTGGATGGGAGAAACCAGTGACTCTGAAGCTGAAGGTGATACACCACAATGGAG 954 Query 983 ACGACGATCGGGTGGATCGAACAGAGAACTTGAACGATTACATAGGCCAG-AACTGGGTG 1041 || ||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||| Sbjct 955 ACAACGATCGGGTGGAACGAATAGAGAACTTGAACGATTACATAGGCC-GCAACTGGGTG 1013 Query 1042 GATATTTTGGCCGGAGTTTTCGTGGTTCCGCC-AAAAACTACTCCCGCAACGATCATTTT 1100 |||||||||||||||||||| ||||||||||| |||||| |||||||||| || | ||| Sbjct 1014 GATATTTTGGCCGGAGTTTTTGTGGTTCCGCCGAAAAAC-ACTCCCGCAATTATTACTTT 1072 Query 1101 CACCATGTATCAGTACGAAGACAAGTATAAGAAAAAGGGACTCGTCGTCAAAGGTGTTGC 1160 |||||||||| || || || | ||||||||||| ||||||||||||||||| ||| | Sbjct 1073 CACCATGTATGAG-ACC--GA-A--TATAAGAAAAAAGGACTCGTCGTCAAAGGGGTTAC 1126 Query 1161 AATACGTCCCACGAACTAA 1179 ||| ||||||||||||||| Sbjct 1127 AATTCGTCCCACGAACTAA 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43993846218 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5