BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45080.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887495 jgi|Araly1|887495|Al_scaffold_0065_3 1620 0.0
Ahg915655 jgi|Araly1|915655|Al_scaffold_0008_406 1513 0.0
Ahg915653 jgi|Araly1|915653|Al_scaffold_0008_404 676 0.0
Ahg952380 jgi|Araly1|952380|scaffold_6500005.1 394 8e-109
> Ahg887495 jgi|Araly1|887495|Al_scaffold_0065_3
Length=1182
Score = 1620 bits (877), Expect = 0.0
Identities = 1086/1187 (91%), Gaps = 13/1187 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60
Query 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119
|||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||
Sbjct 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCCATCTTGACCCTGCCTTGAGAGA 119
Query 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178
|||||| |||||||||||||||||||| | |||||||||||||| |||| ||| |||||
Sbjct 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGTTTTTGGGCACAGATTTGGTTAACC 178
Query 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238
| |||| |||||| |||||||| ||| ||||||||||||| ||||| | |||||||||||
Sbjct 179 TTTTGAAGAGGATAGAAGAGTCAGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238
Query 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298
| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 GTTCGTATAGGTGCTTGGATGAGCTGGCCAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298
Query 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCTGTAAAATTTCTTGAAGGAA 358
||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||
Sbjct 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTTGTGAAATATCTTAAAGGAA 358
Query 359 AATTTGGCGATAATTTCAGGGCTCTGGAACGCAATAATCGACACATGCTACCAATAACTC 418
| ||||||||||||||||||| || ||||||||||||| |||||||| || || |||||
Sbjct 359 ATTTTGGCGATAATTTCAGGGAACTAGAACGCAATAATCTACACATGCAACAAAGAACTC 418
Query 419 AGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGAAC 478
||||||||||| |||| |||| ||||||||||| ||||| ||| ||||| ||| ||||
Sbjct 419 AGAAATGGAAGAAAGCTTTAGTGTCTATCCCGGAATCAAAAGGGATGCCAAGGGCAGAAC 478
Query 479 AAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAATTAC 538
||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 479 AAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAGAATTAC 538
Query 539 TGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGTTTCC 597
|||| ||||||||| ||||||||||| |||||||||||| || ||| || |||||||
Sbjct 539 TGGATTATATGGCTGCCAGAAGAAACAAAGAAATAGAAGCG-AATCGTCAAGGAGTTTCC 597
Query 598 ATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT-CC- 655
||||||||| ||| |||||| |||| ||||||||||||||||||||||||| |||| ||
Sbjct 598 ATCGTCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCGTGGTCCCT 657
Query 656 -CTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCATG 714
|||||||| ||| |||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 658 GCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCGTGGTCCCGTCCATG 717
Query 715 GTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGAG 773
|||| |||||||||||||| | ||||| |||| ||| |||||||||| ||||||||||||
Sbjct 718 GTCCTTGCAAGGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAAGATGGACTTGGAG 776
Query 774 TACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTTA 833
||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 777 TACTATCAACGAGGCACCAAACTCTGCGGAAATTGAGATTGCGACGTCGAATAAACTTTA 836
Query 834 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACGA 893
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACGA 896
Query 894 GGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAATC 952
||||||||||||||| |||||||||| |||||||||||||||||| | |||||||| ||
Sbjct 897 GGCTGTATTCGTAGTGAAATTAGAAATTAATGCTAGTGGATGGGA-TATACCAGTGACTC 955
Query 953 TAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAACT 1012
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 956 TAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAACT 1015
Query 1013 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1075
Query 1073 CAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAGA 1132
||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 1076 CAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAGA 1135
Query 1133 AAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1136 AAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1182
> Ahg915655 jgi|Araly1|915655|Al_scaffold_0008_406
Length=1173
Score = 1513 bits (819), Expect = 0.0
Identities = 1069/1188 (90%), Gaps = 24/1188 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60
Query 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119
|||||||||||||||||||| | |||||||||||||| ||||| |||||| ||||||||
Sbjct 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCTATCTTGACCCTGCTTTGAGAGA 119
Query 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178
|||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| | |||
Sbjct 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGCTTTTGGGCTCAGATTTGGTTCACC 178
Query 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238
|||||| |||||| |||||||| ||| ||||||||||||| ||||| | |||||||||||
Sbjct 179 TATTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238
Query 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298
| ||| || |||||||| | |||||||| |||||||||||| ||||||||||||||||||
Sbjct 239 GTTCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298
Query 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCT-GTAAAATTTCTTG-AAGG 356
||| ||||||||||||||||||||||||||||||||||| | || |||| || || ||||
Sbjct 299 TCAAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-TCGTGAAATATC-TGAAAGG 356
Query 357 AAAATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACA-CATGCTACCAATA 414
||| ||||||||| ||||||||| || | ||||||| | |||| || || | || |
Sbjct 357 AAAGTTTGGCGATCATTTCAGGGATC-AAATACGCAATCTTAGACACCA-GCCAGAAAGA 414
Query 415 ACTCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCT 474
|||||||||||| |||| || ||| |||||| || | ||||||||||||||| || ||
Sbjct 415 ACTCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCA 474
Query 475 GAACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAA 534
| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||
Sbjct 475 GCCCAAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAAAA 534
Query 535 TTACTGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGT 593
| |||||| |||||||||||||||| | |||||||||||| || ||| || |||
Sbjct 535 TCACTGGATTATATGGCTGTGAGAAG-----A-GAAATAGAAGCG-AATCGTCAAGGAGT 587
Query 594 TTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT 653
||||||| ||||| ||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 588 TTCCATCATCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCATGGT 647
Query 654 CCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCAT 713
|||||||||| ||| |||||||||||||||||| ||||| ||||| ||||||| |||||
Sbjct 648 CCCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCCTGGTCCCGTCCAT 707
Query 714 GGTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGA 772
||||| ||||| |||||||| | ||||| |||| ||| ||||||||| |||||||||||
Sbjct 708 GGTCCTTGCAAAGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAGTATGGACTTGGA 766
Query 773 GTACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTT 832
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 767 GTACTATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTCGAATAAACTTT 826
Query 833 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACG 892
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 827 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACG 886
Query 893 AGGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAAT 951
|||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 887 AGGCTGTATTCGTAGTGAAATTAGAAAATAATGCTAGTGGATGGGAG-ATACCAGTGACT 945
Query 952 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAAC 1011
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 946 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAAC 1005
Query 1012 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1065
Query 1072 CCAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAG 1131
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1066 CCAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAG 1125
Query 1132 AAAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1126 AAAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1173
> Ahg915653 jgi|Araly1|915653|Al_scaffold_0008_404
Length=1245
Score = 676 bits (366), Expect = 0.0
Identities = 601/713 (84%), Gaps = 22/713 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
|||||| ||||||| | || ||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1 ATGGCTACTTCTTCTTTGGCTGTGAAACCAACCCCAACGGGACCTCAAGTGTTCATATGC 60
Query 61 TTCCGGGGAGCAGATGTCCGCAAACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGAA 120
|||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 61 TTCCGGGGGGCAGGTGTCCGTAAACACTTCATAAGCTTTCTTGACCCTGCCTTGAGAAAA 120
Query 121 GCGAACATAAACGTCTTCATAGATGAGAACGAGTTTTTGGGCTCAGAAATGGCTAACCTA 180
||||| ||||||||||||||||||||| |||||| |||||||||||| ||| |||| ||
Sbjct 121 GCGAATATAAACGTCTTCATAGATGAGGACGAGTATTTGGGCTCAGATTTGGTTAACTTA 180
Query 181 TTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAAGA 240
|||| |||||| |||||||| ||| ||||||||||||| ||||| | ||||||||||||
Sbjct 181 TTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAAGT 240
Query 241 TCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTCTC 300
||| || |||||||| | |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 241 TCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTCTC 300
Query 301 ATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-CTGTAAAATTTCTTGAA-GGAA 358
| ||||||||||||||||||||||||||||||||||| | || |||| ||| ||| ||||
Sbjct 301 AAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTC-GTGAAATATCT-GAAAGGAA 358
Query 359 AATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACAC-ATGCTACCAATAAC 416
| ||||||||| ||||||||| || | ||||||| | ||||| | || | || |||
Sbjct 359 AGTTTGGCGATCATTTCAGGGATCAA-ATACGCAATCTTAGACACCA-GCCAGAAAGAAC 416
Query 417 TCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGA 476
|||||||||| |||| || ||| |||||| || | ||||||||||||||| || || |
Sbjct 417 TCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCAGC 476
Query 477 ACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCA-ACAAT 535
||||| || ||||||| |||||||||| ||||||||||||||||||||| | | |
Sbjct 477 CCAAAG-GA-----CCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAGAGA-T 529
Query 536 TACTGGAGAATATGGCTGTGAGAAG-AAAC-AATGAAATAGAAGCGCAA-CGTAAATTAG 592
| ||||| ||||||| || | ||| |||| || |||| ||||||| || | | | ||
Sbjct 530 TGGTGGAGCATATGGCCGTCA-AAGGAAACCAA-GAAACAGAAGCG-AATCTTCCAGGAG 586
Query 593 TTTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGG 652
|||||||||||| ||| |||||| ||| ||||||||||| |||||||||||||||||
Sbjct 587 GTTCCATCGTCCCAGCAATGAAACCAAAAAGAGAAGCGAATAGTCAAGGAGGTTCCATGG 646
Query 653 TCCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTC 705
||| ||||| ||||||||||| |||||||||||| ||||| ||| |||||||
Sbjct 647 TCCTTGCAATGAAGCCAGAAACAGAAGCGAGTCATCAAGGAGGTTTCGTGGTC 699
> Ahg952380 jgi|Araly1|952380|scaffold_6500005.1
Length=1166
Score = 394 bits (213), Expect = 8e-109
Identities = 326/379 (86%), Gaps = 14/379 (4%)
Strand=Plus/Plus
Query 805 ATTGAAATTGCGACGTTGAATAAAGTTTACTGGCTTAAAATAGTGGGAACAAT-AACTAC 863
||||| |||| |||| |||| ||||||||||||||||||||||| |||||| | || ||
Sbjct 777 ATTGATATTGTGACGATGAAAAAAGTTTACTGGCTTAAAATAGTCGGAACATTCAA-AAC 835
Query 864 GGAGAATCTAACACCAGGAGCTAAGTACGAGGCTGTATTCGTAGTCAAATTAGAAA-ATA 922
|| | |||||||||||||| | ||||| |||| ||| || ||||| |||||| ||| |||
Sbjct 836 GGGGGATCTAACACCAGGAACAAAGTATGAGGTTGTGTTTGTAGTGAAATTA-AAAGATA 894
Query 923 ATGCTAGTGGATGGGAGCAACCAGTGAATCTAAAGCTGAAGGTGGTACAACACGATGGGG 982
|||| | |||||||||| ||||||||| ||| |||||||||||| |||| ||| |||| |
Sbjct 895 ATGCAATTGGATGGGAGAAACCAGTGACTCTGAAGCTGAAGGTGATACACCACAATGGAG 954
Query 983 ACGACGATCGGGTGGATCGAACAGAGAACTTGAACGATTACATAGGCCAG-AACTGGGTG 1041
|| ||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||
Sbjct 955 ACAACGATCGGGTGGAACGAATAGAGAACTTGAACGATTACATAGGCC-GCAACTGGGTG 1013
Query 1042 GATATTTTGGCCGGAGTTTTCGTGGTTCCGCC-AAAAACTACTCCCGCAACGATCATTTT 1100
|||||||||||||||||||| ||||||||||| |||||| |||||||||| || | |||
Sbjct 1014 GATATTTTGGCCGGAGTTTTTGTGGTTCCGCCGAAAAAC-ACTCCCGCAATTATTACTTT 1072
Query 1101 CACCATGTATCAGTACGAAGACAAGTATAAGAAAAAGGGACTCGTCGTCAAAGGTGTTGC 1160
|||||||||| || || || | ||||||||||| ||||||||||||||||| ||| |
Sbjct 1073 CACCATGTATGAG-ACC--GA-A--TATAAGAAAAAAGGACTCGTCGTCAAAGGGGTTAC 1126
Query 1161 AATACGTCCCACGAACTAA 1179
||| |||||||||||||||
Sbjct 1127 AATTCGTCCCACGAACTAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5