BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45090.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887494 jgi|Araly1|887494|Al_scaffold_0065_2 1140 0.0
> Ahg887494 jgi|Araly1|887494|Al_scaffold_0065_2
Length=855
Score = 1140 bits (617), Expect = 0.0
Identities = 780/858 (91%), Gaps = 14/858 (2%)
Strand=Plus/Plus
Query 141 GTCGCAAGAAGAAGATGTGAGCAAAGGTCTGATCAATTTTCTCGAACCGGTCTTACAAAA 200
||| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 3 GTCACAGGAAGAAGATGTGAGTAAAGGTCTGATCAATTTTCTCGAACCTATCTTAAAAAA 62
Query 201 CAAAAATATAAATGTCTTCATAGACG-AGGAAGAGGTAAGAGGCAAAGGTCTAAAGAATC 259
| |||||||||||||||||||||||| || || | ||| |||| |||| |||||||||||
Sbjct 63 CGAAAATATAAATGTCTTCATAGACGAAGAAACA-GTACGAGGAAAAGATCTAAAGAATC 121
Query 260 TGTTTAAAAGAATCCAGGACTCAAAGATCTCACTCGCGATCTTTTCAGAGTCAAAATGTG 319
|||||||||||||||||||| | | ||||||||| || ||||||||||||||||||||||
Sbjct 122 TGTTTAAAAGAATCCAGGACACGAGGATCTCACTGGCTATCTTTTCAGAGTCAAAATGTG 181
Query 320 ATTTTAATGATTTACTGAAGAAT-AATGAATCCGCCGATGAAGCGATTCCTATATTCTAC 378
|||||||||| ||| |||| || || ||| ||| |||||||||||||||||||||||||
Sbjct 182 ATTTTAATGAGCTACGGAAG-ATCAAAGAACCCGTCGATGAAGCGATTCCTATATTCTAC 240
Query 379 AAGGTAGATGCGACTGGAGACTTGGCCGATCTCCAAAACAGCGTAAAGTGCAAGAAAGAT 438
||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||
Sbjct 241 AAGGTAGATGCGATTGGAGACTTGGCTGATCTCCAAAACA--G----GTGCAAGAAAGAT 294
Query 439 CTCATAAATTCTGCCGTGGAGGAAATGAGTAAATTGCTGGCGAATATTTCTGTGGGAGTA 498
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 295 CTCATAAATTCTGCCGTGGAGGAAATGAGTAGATTGCTAGCGAATATTTCTGTGGAAGTA 354
Query 499 TACAGAGAAAAAGAAGCAAAT-AGCAAATGTTTCATGGTCCCTGCAAGGAAACTCCAGAT 557
||||||||||||||| |||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 355 AACAGAGAAAAAGAAGGAAATCA-CAAATGTTTTATGGTCCCTGCAAGGAAACTTCAGAT 413
Query 558 GAGTCACTCGGAGAAACTGATAAATTGGACATGGAGTTCTATCTACGAGACACCAAATGA 617
|||||||||||||| || ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 414 CAGTCACTCGGAGAAGCTAATAAACTGGACCTGGAGTTCTATCTACGAGGCACCAAATGA 473
Query 618 CGCTGCAATTGAAGTTGCCATGTTGAATGAAGTCCACTGGCTGCACATGTCTGGAAATTT 677
||||| |||||| |||| ||||| |||||||| | ||||| |||||||||||||| ||
Sbjct 474 AGCTGCCATTGAAATTGCGATGTTAAATGAAGTTTATTGGCTACACATGTCTGGAAACTT 533
Query 678 TCACACAAGAAATCTGACACCAGGGACAAAATATGAGGTTGTCTTTTTGGTGAGCTTAGA 737
||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||
Sbjct 534 TCACACAAGAAATCTAACACCTGGGACAAAATATGAGGTTGTGTTTCTGGTGAGTTTAGA 593
Query 738 TGATACATCTTCAGGATGGGAGCAGCCGGTGAATCTGAACTTGAAGGTAATTAATCCAGA 797
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 594 GGATACATCTTTTGGATGGGATCAGCCGGTGAATCTGAACTTGAAGCTAATTAATCCAGA 653
Query 798 TGGAACTGAGAGTTTGCAGGAGCGAGA-AACAAGCTTGGAATGTCACATAGGTGAAAACT 856
||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 654 TGGAACTGAGAGTTTTCAGGAGCGA-ACAACAAGCTTGGAATGTCACATAGGCGAAAACT 712
Query 857 GGGTGGATATTCAAGCTGGAGTTTTGGTGGCACCTCCTAGGAATGCGGCCGCAAAGATGA 916
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 GGGTGGATATTCAAGCTGGAGTTTTGGTGGCACCGCCTAGGAATGCGGCCGCAAAGATGA 772
Query 917 CTTTCACCATGTATCAGTATGTGACTAGTGACCGGAAGAGCGGGCTCGTGGTCAAAGGTG 976
|||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 773 CTTTCACCATGTATCAATATGTGACCAGTGACCGGAAGAGCGGGCTCCTGGTCAAAGGTG 832
Query 977 TTGCTATTCGTCCCATGC 994
||||||||||||||||||
Sbjct 833 TTGCTATTCGTCCCATGC 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5