BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45100.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494472 jgi|Araly1|494472|fgenesh2_kg.8__288__AT5G45100.1 1269 0.0
Ahg946204 jgi|Araly1|946204|scaffold_702433.1 294 8e-79
> Ahg494472 jgi|Araly1|494472|fgenesh2_kg.8__288__AT5G45100.1
Length=1017
Score = 1269 bits (687), Expect = 0.0
Identities = 833/899 (93%), Gaps = 27/899 (3%)
Strand=Plus/Plus
Query 70 AATGGCTGTTGAAGCAAGACACATGAATCTCTTCTCTTCTCAATACATTACCAACAGAGA 129
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 34 AATGGCTGTTGAAGCAAGACACATGAATCTCTTCTCTTCTCAATACATTACCGACAGAGA 93
Query 130 ATGTGTTAAATCTCAAACGAATATGAACAACGGACAAC-AAATCGCCGGCGGTG-GTTTT 187
||||||||||||||||||||||||||| || ||||| | |||||||||||| | |||
Sbjct 94 ATGTGTTAAATCTCAAACGAATATGAATTAC-AACAACGGATTCGCCGGCGGTGAG-TTT 151
Query 188 CCGGTAACAATCGGTGATCGGAATTTACAGTACATAGATCCGATTAACAGCTTCAACAAA 247
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 152 CCGGTGACAATCGGTGATCGGAACTTACAGTACATAGATCCGATTAACAGCTTCAACAAA 211
Query 248 TCAGAAAGCGAGCTCACAGCTATTTCAAAACGTCAGAGAGATTCAACGTTTGATTCAGAC 307
||||||||| | |||||||| |||||||||||||| |||||| ||||||||||||| |
Sbjct 212 TCAGAAAGCAATCTCACAGCGATTTCAAAACGTCAAAGAGATACAACGTTTGATTC--A- 268
Query 308 GCTTTAATCGCATCTCAGAAACGCAGAGCAATCGCGTTTTCTCCGGCGTCATTAATCGAC 367
|| ||||||||||||||||||| ||||||||||||| | |||| |||||||||
Sbjct 269 -----AA-CGCATCTCAGAAACGCAGATAAATCGCGTTTTCT-C--CGTCGTTAATCGAC 319
Query 368 GCAGAGTTAGTTTCACAGATCCAACAGCAAAACTCAGAAATCGATAGATTCG-TAGCGCA 426
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 320 GCAGAGTTAGTTTCTCAGATTCAACAGCAAAACTCAGAAATCGATAGATTCGTTA-TGCA 378
Query 427 ACAAACGGAAACGTTGAGAATCGAATTAGAAGCGAGACAAAGAACGCAAACGCGGATGTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACAAACGGAAACGTTGAGAATCGAATTAGAAGCGAGACAAAGAACGCAAACGCGGATGTT 438
Query 487 AGCGTCAGCGGTACAAAACGCGATATTGAAAAAGCTGAAAGCGAAAGACGAAGAGATTAT 546
|||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||
Sbjct 439 AGCGACAGCGGTACAAAACGCGATTTTGAAAAAGCTAAAAGAGAAAGACGAAGAGATAAT 498
Query 547 AAGAATGGGGAAATTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTAGAGAA 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 499 AAGAATGGGGAAATTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTTGAGAA 558
Query 607 TCAGATCTGGCGTGATTTAGCACAAACTAATGAAGCTACTGCGAATAATCTCAGATCAAA 666
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 559 TCAGATCTGGCGTGATTTAGCACAAAGTAATGAAGCTACTGCGAATAATCTTAGATCAAA 618
Query 667 TCTCGAACAAGTTTTGGCTCAAGTTGATGATTTAGATGCGTTTCGTCGTCCTTTGGTTGA 726
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 619 TCTTGAACAAGTTTTAGCTCAAGTTGATGATTTTGATGCGTTTCGTCGTCCTTTGGTTGA 678
Query 727 AGAAGCTGATGATGCAGAATCTAGCTGTGGAAGCTGTGACGGAGGTGATGTAACGGCGGT 786
||||| | | ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 679 AGAAG---ACG---CAGAATCTAGCTGTGGAAGTTGTGACGGAGGTGAAGTAACGGCGGT 732
Query 787 TGTTAACGGAGGATGTAAACGGTGCGGTGAGTTAACGGCGAGTGTGTTGGTGTTGCCTTG 846
| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 733 T---AACGGAGGGTGTAGACGGTGCGGTGATTTAACGGCGAGTGTGTTGGTGTTGCCTTG 789
Query 847 TCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGTCGGCTTTGTTGCGGACGTGTCCTGT 906
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 790 TCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGTCGGCTTTGTTACAGACGTGTCCTGT 849
Query 907 ATGTGATATGGTCATGACTGCTAGTGTACATGTTAACATGTCATCATGACCattttttt 965
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 850 ATGTGATATGGTCATGACTGCTAGTGTACATGTTAACATGTCATCATGACCATGTTTTT 908
> Ahg946204 jgi|Araly1|946204|scaffold_702433.1
Length=955
Score = 294 bits (159), Expect = 8e-79
Identities = 471/613 (77%), Gaps = 56/613 (9%)
Strand=Plus/Plus
Query 383 CAGATCCAACAGCAA-AAC--TCAGAAATCGATAGATTCGTAGCGCAACAAACGGA-AAC 438
||||| ||| | ||| ||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct 360 CAGATTCAAAACCAACAACAATCAGAGATTGATAGGTTCGTAGCTCAGCAAACAGAGAA- 418
Query 439 GTTGAGAATCGA-ATTAGAAGCGAGACAA-AGAACGCAAACGCGGATGTTAGCGTCAGCG 496
| | ||||| || ||| ||||| || ||| | ||||||||||||||||||||| || |||
Sbjct 419 GCTAAGAATAGAGATT-GAAGCAAGGCAACA-AACGCAAACGCGGATGTTAGCATCTGCG 476
Query 497 GTACAAAACGCGATATTGAA-AAAGCTGAAAGCGAAAGACGAAGAGATTATAAGAATGGG 555
|| |||||||| ||| || ||| || |||| ||||||||| || || || | ||
Sbjct 477 GTTCAAAACGCTATAGCCAAGAAA-CTAAAAGAGAAAGACGACGAAATCGTACGGAT-TA 534
Query 556 GAAA--TTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTAGAGAA-TCAGAT 612
|||| || ||||||||||||||||| || ||||||| ||| ||||| || || ||||||
Sbjct 535 GAAACCTT-AACTGGGTTTTACAAGAGCGAGTGAAGAGTCTTTACGTCGA-AACTCAGAT 592
Query 613 CTGGCGTGATTTAGCACAAACTAATGAAGC-TACTGCGAATAATC-TCAGATCAAATCTC 670
||||||||| | || ||||| || ||||| || || |||| || || || |||| ||
Sbjct 593 TTGGCGTGATATCGCTCAAACCAACGAAGCAAAC-GCTAATACTCTTC-GAACAAACCTA 650
Query 671 GAACAAGTT-TTGGCTCAAGTTG--ATGATTTAGATGCGTTTCGTCGTCCTTTGGTTGAA 727
|| |||||| || |||||| | | | | ||| | || ||| | || || || |||
Sbjct 651 GACCAAGTTCTT-GCTCAAATCGAAACG-TTTCCAACCGCTTC--AG-CCGTT-GTAGAA 704
Query 728 GAAGCTGATGATGCAGAATCTAGCTGTGGAAGCTG-TGAC-G-GA-GGTGAT-GT-AA-C 780
| | | || | || ||||| || |||||||| || || | | || |||| | || || |
Sbjct 705 G-A-C-GACG-TG--GAATCGAGTTGTGGAAGTTGCTG-CGGTGATGGTGGTGGTGAAGC 757
Query 781 GG---CGGTTGTTAACGGAGGATGTAAACGGTGCGGTGAGTTA-ACGGCGAGTGTGTTGG 836
|| ||| |||| || || || ||||||||||||||| | | |||||||||||||
Sbjct 758 GGTTACGGCGGTTAGTGGTGGTTGCAAACGGTGCGGTGAGAGAGA-AGCGAGTGTGTTGG 816
Query 837 TGTTGCCTTGTCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGT-CGGCTTTGTTGCGG 895
|||| || |||||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 817 TGTTACCATGTCGTCATTTGTGTTTGTGTACGGTTTGTGG-TGGTTCGGCTTTGTTACGG 875
Query 896 ACGTGTCCTGTATGTGATAT-GGTCATGA-CTGCTAGTGTACATGTTAACATGTCATCAT 953
|| ||||| || || ||| | |||||||| | |||||||| |||||||||||||| || |
Sbjct 876 ACTTGTCCAGTTTGCGAT-TCGGTCATGAAC-GCTAGTGTGCATGTTAACATGTCTTCTT 933
Query 954 GACCatttt-ttt 965
||||||||| |||
Sbjct 934 GACCATTTTCTTT 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5