BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45105.2
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330886 jgi|Araly1|330886|fgenesh1_pm.C_scaffold_8000229 942 0.0
Ahg330887 jgi|Araly1|330887|fgenesh1_pm.C_scaffold_8000230 128 7e-29
Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2 106 3e-22
> Ahg330886 jgi|Araly1|330886|fgenesh1_pm.C_scaffold_8000229
Length=1020
Score = 942 bits (510), Expect = 0.0
Identities = 564/591 (95%), Gaps = 0/591 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACGACTACTCAACACATGAATCAAATCTTCCTCGTACTCCTCCTAATCTCCTTC 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTACGACTACACAACACATGAATCAAATCTTCCTCGTACTCCTCCTCATCTCCTTC 60
Query 61 GCAATCTCTCCGGCGATCTCAACGGTTCCAAAAGAATGCGAGACCGATTCAACAGACTCT 120
|||||||||||||| || |||||||||||||||||||| ||| |||| |||||||| |||
Sbjct 61 GCAATCTCTCCGGCAATATCAACGGTTCCAAAAGAATGTGAGGCCGACTCAACAGAATCT 120
Query 121 TGCATCGATAAAACCAAAGCCTTACCTCTCAAAATTGTAGCAATCGTTGCCATCCTCGTG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGCATCGATAAAACCAAAGCCTTACCTCTCAAAATCGTAGCAATCGTTGCCATCCTCGTG 180
Query 181 ACAAGCATGATCGGAGTCGCAGCTCCTCTCTTTAGCCGATATGTCACATTCCTGCATCCA 240
||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACAAGCATGCTTGGAGTTACAGCTCCTCTCTTTAGCCGATATGTCACTTTCCTGCATCCA 240
Query 241 GATGGTAAAATCTTTATGATCATTAAGTGTTTTGCATCCGGGATCATCCTAGGAACCGGC 300
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GACGGTAAAATCTTTATGATCATCAAGTGTTTTGCATCCGGGATCATCCTAGGAACCGGT 300
Query 301 TTCATGCATGTTTTGCCCGATTCTTTCGAGATGTTGTCCTCTCCATGTCTTGAAGACAAT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCATGCATGTTTTGCCGGATTCTTTCGAGATGTTGTCCTCTCCATGTCTTGAAGACAAT 360
Query 361 CCATGGCACAAGTTTCCCTTCACTGGCTTTGTCGCTATGTTGTCCGGTCTTGTAACTCTT 420
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CCATGGCACAAATTTCCCTTCACGGGCTTTGTCGCTATGTTGTCCGGTCTTGTAACTCTC 420
Query 421 GCTATTGACTCTATCGCTACAAGTCTCTACACCAAGAAAGCTGTCGCTGATGACAGCGAA 480
|||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 421 GCTATTGACTCTATTGCTACAAGTCTCTACACCAAGAAAGCTTTTGCTGATGACAGCGAA 480
Query 481 GAAAGGACTACTCCTATGATAATTCAAATCGATCATTTGCCTCTAACAACTAAAGAACGT 540
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAAAGACTACTCCAATGATAATTCAAATCGATCATTTGCCTCTAACAACTAAAGAACGT 540
Query 541 AGCTCTACATGCTCAAAACAACTATTGCGGTACCGAGTTATCGCCACGGTG 591
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGCTCTACATGCTCAAAACAACTATTGCGGTACCGAGTTATCGCCATGGTG 591
Score = 270 bits (146), Expect = 1e-71
Identities = 168/179 (94%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 685 AGCGTTTACAAAGACAACAGTCCAACAGCATTAATCACGGTAGGACTGCTCAATGCTTGT 744
|||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| |||
Sbjct 829 AGCGTTTACAAAGACAACAGTCCAACCGCATTGATCACAGTTGGACTGCTCAATGCATGT 888
Query 745 TCTGCAGGATTGCTCATTTATATGGCACTTGTAGATCTTCTAGCCGCAGAGTTTATGGGA 804
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 TCCGCAGGATTGCTCATTTATATGGCACTCGTAGATCTTCTAGCCGCAGAGTTTATGGGA 948
Query 805 TCTATGCTCCAAAGAAGCGTCAAGCTTCAGCTTAACTGCTTCGGGGCAGCTTTGCTTGG 863
|||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 949 TCTATGCTCCAAGGAAGCGTCAAACTTCAGCTTAACTGCTTCGGTGCGGCTTTGCTTGG 1007
> Ahg330887 jgi|Araly1|330887|fgenesh1_pm.C_scaffold_8000230
Length=1029
Score = 128 bits (69), Expect = 7e-29
Identities = 96/109 (88%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 578 TTATCGCCACGGTGCAACCAACGACACATGCACTATTAAAGGCCTTATTGCAGCTCTTTG 637
||||| | | |||||||| || ||||||||||| |||||||| || ||||||||||||||
Sbjct 616 TTATCTCTA-GGTGCAACAAATGACACATGCACCATTAAAGGTCTCATTGCAGCTCTTTG 674
Query 638 CTTCCATCAAATGTTCGAAGGGATGGGTCTCGGCGGTTGCATCCTTCAG 686
||||||||||||||| ||||| |||||||| || ||||||||||| |||
Sbjct 675 CTTCCATCAAATGTTTGAAGGCATGGGTCTTGGAGGTTGCATCCTCCAG 723
> Ahg492894 jgi|Araly1|492894|fgenesh2_kg.7__2327__AT4G19690.2
Length=1356
Score = 106 bits (57), Expect = 3e-22
Identities = 77/87 (89%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 600 GACACATGCACTATTAAAGGCCTTATTGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGG 659
||||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 671 GACACTTGCACCATTAAAGGACTCATCGCAGCTCTTTGCTTCCATCAAATGTTCGAAGGA 730
Query 660 ATGGGTCTCGGCGGTTGCATCCTTCAG 686
|||||||| || |||||||| || |||
Sbjct 731 ATGGGTCTTGGGGGTTGCATACTCCAG 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5