BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45110.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494469 jgi|Araly1|494469|fgenesh2_kg.8__285__AT5G45110.1 3500 0.0
Ahg890208 jgi|Araly1|890208|Al_scaffold_0007_2194 998 0.0
> Ahg494469 jgi|Araly1|494469|fgenesh2_kg.8__285__AT5G45110.1
Length=2347
Score = 3500 bits (1895), Expect = 0.0
Identities = 2222/2374 (94%), Gaps = 45/2374 (2%)
Strand=Plus/Plus
Query 1 AAATTCTCTTCCTTTTTATCTCTTTGATACATCTCAATTTGGTTCTTTTGCCTTCTCTTT 60
||||||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1 AAATTCTCTTCGTTTTTATCTCTTTGATAGATCTCAA---------TTTGCCTTCTCTTT 51
Query 61 GATCTTATCTCTTACGATTGTGCAGATCTCAA-TCTCTATATCCTTGGT-TGT-GTCAGA 117
|||||||||| ||||||||||||||||||||| || || || || || | | ||| |
Sbjct 52 GATCTTATCTTTTACGATTGTGCAGATCTCAATTC-CT-GAT--TTTGTATTTCTTCA-A 106
Query 118 T-TCTC-TT-AGGGTTTAttttctctcccaattttgtttgattccttgtccaaagtttct 174
| | || || ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCTTTCTTTGAGGGTTT-TTTTCTCTCCCAATTTTGTTTGATTCCTTGTCCAAAGTTTCT 165
Query 175 tcctttccttttgacttttttttGTGGTACATTGAATCAGAGGTG-TAAGAGTAATAGTT 233
|||||||||| |||| ||| ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 166 TCCTTTCCTTATGAC-TTTCTTT-TGGTACATTGAATCAGAGGTGCT-AGAGTAATAGTT 222
Query 234 TCATAACTCAAATCCCCAAGTGTACAAATTTTCCTCTTTTGGTTCTGGGTTTGGTTGATT 293
||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||
Sbjct 223 TCATAACTCAAATCCCCAAGTTTACAAAATTTCCCCTTTTGGTTCTGTGTTTGGTTGATT 282
Query 294 CCTTGTTAGAAATGTAAATTTAGGGCTTTTGTATCTGAAACCGATCTTCAGACTTGTGTA 353
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 283 CCTTGTTAGAAATGTAAATTTTGGGCTTTTGTATCTGAAACCGATCTTCAGACTTGTGTA 342
Query 354 ATCTTCTTGATCTTCATG---CAAGATTGATAATTCTACaagaagaagaagaagagaaAA 410
| |||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||
Sbjct 343 A---TCTTGATCTTCATGCAACAAGATTGATAATTCTGCAAAAAGAAGAAG-AGA-AAAA 397
Query 411 TGGCTACTTTGACTGAGCCATCATCATCTTTGAGTTTCACATCTTCTCATTTCTCTTATG 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 398 TGGCTACTTTGACTGAGCCATCATCATCTTTAAGTTTCACATCTTCTCATTTCTCTTATG 457
Query 471 GTTCTATTGGGTCCAATCACTTCTCATCAAGCTCAGCTTCTAATCCTGAAGTTGTTAGTC 530
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 GTTCTATTGGGTCTAATCATTTCCCATCAAGCTCAGCTTCTAATCCTGAAGTTGTTAGTC 517
Query 531 TAACCAAACTCAGCTCCAATCTTGAGCAGCTTCTTAGTAATTCAGATTGTGATTACAGTG 590
||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 518 TAAGCAAACTCAGCTCCAATCTTGAGCAGCTTCTTAATAATCCAGATTTTGATTACAGTG 577
Query 591 ATGCAGAGATCATTGTTGATGGTGTTCCAGTTGGTGTTCATAGATGCATTTTAGCTGCAA 650
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 578 ATGCAGAGATCATTGTTGATGGTGTTCCGGTTGGTGTTCATAGATGCATTTTAGCTGCAA 637
Query 651 GAAGTAAGTTTTTCCAAGATTTGTTTAAGAAAGAAAAGAAAATTTCGAAAACTGAGAAAC 710
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 638 GAAGTAAGTTTTTCCAAGAATTGTTCAAGAAAGAGAAGAAAATATCGAAAACTGAGAAAC 697
Query 711 CAAAGTATCAGTTGAGAGAGATGTTACCTTATGGAGCTGTTGCTCATGAAGCTTTCTTGT 770
| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 698 CTAAGTACCAGTTGAAAGAGATGTTACCTTATGGAGCTGTTGGTCATGAAGCTTTCTTGT 757
Query 771 ATTTCTTGAGTTATATATATACTGGGAGATTAAAGCCTTTTCCATTGGAGGTTTCGACTT 830
|||||||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||
Sbjct 758 ATTTCTTGAGTTATATCTACACTGGGAGATTAAAGCCATTTGCTTTGGAAGTTTCGACTT 817
Query 831 GTGTTGATCCAGTTTGTTCTCATGATTGTTGTCGACCTGCCATTGATTTTGTTGTTCAAT 890
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 818 GTGTTGATCCAGTTTGTGCTCATGATTCTTGTCGACCTGCCATTGATTTTGTTGTTCAAT 877
Query 891 TGATGTATGCTTCCTCTGTTCTCCAAGTGCCTGAGCTAGTTTCATCTTTTCAGCGGCGGC 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 878 TGATGTATGCTTCATCTGTTCTCCAAGTGCCTGAGCTAGTTTCATCTTTTCAGCGACGGC 937
Query 951 TTTGTAACTTTGTGGAGAAGACCCTTGTTGAGAATGTTCTTCCCATTCTTATGGTTGCTT 1010
||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 938 TTTGTAACTTTGTGGAGAAGACCCTTGTTGAGAATGTGCTTCCGATCCTTATGGTTGCGT 997
Query 1011 TCAATTGTAAGTTGACTCAGCTTCTTGATCAGTGTATTGAGAGAGTGGCGAGGTCAGATC 1070
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 998 TCAATTGTAAGTTGACTCAGCTTCTTAATCAGTGTATTGAGAGAGTGGCGAGGTCAGATC 1057
Query 1071 TTTACAGGTTCTGTATTGAAAAGGAAGTTCCTCCCGAAGTAGCAGAGAAGATTAAACAGC 1130
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1058 TTTACAGGTTCTGTATCGAAAAGGAAGTTCCTTCTGAAGTAGCAGAGAAGATTAAACAGC 1117
Query 1131 TTCGACTTATATCCCCGCAAGACGAAGAAACCAGTCCCAAGATTTCGGAGAAATTGCTTG 1190
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1118 TTCGACTTATGTCCCCGCAAGACGAAGAAACCAGTCCCAAGATTTCGGAGAAATTGCTCG 1177
Query 1191 AAAGAATCGGTAAAATTCTCAAGGCCTTGGATTCAGATGATGTTGAGCTTGTGAAGCTTC 1250
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1178 AAAGAATCAGTAAAATTCTCAAGGCGTTGGATTCAGATGATGTTGAGCTTGTGAAGCTTC 1237
Query 1251 TTTTGACTGAGTCAGATATCACTCTAGATCAAGCCAATGGTCTGCATTATTCTGTTGTGT 1310
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1238 TTTTGACTGAGTCAGATATCACTTTAGATCAAGCCAATGGTCTGCATTATTCTGTGGTGT 1297
Query 1311 ATAGTGATCCGAAAGTTGTTGCCGAGATTCTTGCTCTGGATATGGGTGATGTGAA-CTAC 1369
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
Sbjct 1298 ATAGTGATCCGAAAGTTGTTGCCGAGATTCTTGCTCTGAATATGGGTGACGTGAATTTTC 1357
Query 1370 AGGAATTCCCGGGGTTACACGGTTCTTCATTTTGCTGCGATGCGTAGAGAGCCATCGATC 1429
|||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1358 -GGAACTCCCGGGGTTATACTGTTCTTCATTTTGCTGCGATGCGTAGAGAGCCATCGATC 1416
Query 1430 ATTATATCGCTTATCGATAAAGGCGCCAATGCATCTGAGTTTACATCTGACGGACGTAGC 1489
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1417 ATTATATCGCTTATCGATGAAGGCGCCAATGCATCTGAGTTTACATCTGACGGACGCAGC 1476
Query 1490 GCAGTTAATATATTAAGAAGACTGACAAATCCAAAGGATTATCATACCAAAACAGCTAAA 1549
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1477 GCAGTTAATATATTGAGAAGACTGACAAATCCAAAGGATTATCATACCAAAACAGCGAAA 1536
Query 1550 GGGCGTGAATCTAGTAAAGCCAGGTTATGCATCGATATCTTGGAAAGAGAAATCAGGAAG 1609
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1537 GGGCGTGAATCTAGTAAAGCTAGGTTATGCATCGATATCTTGGAAAGAGAAATCAGGAAG 1596
Query 1610 AACCCCATGGTTCTAGATACACCAATGTGTTCCATTTCTATGCCTGAAGATCTCCAGATG 1669
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1597 AACCCCATGGTTCTGGATACACCAATGTGTTCCCTTTCTATGCCTGAAGATCTGCAAATG 1656
Query 1670 AGACTGTTGTACCTAGAAAAGAGAGTGGGGCTTGCTCAGTTGTTCTTTCCAACGGAAGCT 1729
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 AGACTGATGTACCTAGAAAAGAGAGTGGGGCTTGCTCAGTTGTTCTTTCCAACGGAAGCT 1716
Query 1730 AAAGTTGCTATGGACATTGGTAACGTAGAAGGTACAAGTGAGTTCACGGGTTTGTCACCT 1789
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1717 AAAGTGGCTATGGACATTGGTAACGTAGAAGGTACAAGTGAGTTCACGGGTCTGCCACCA 1776
Query 1790 CCTTCGAGTGGGTTAACCGGAAACTTGAGTCAGGTTGATTTAAACGAAACTCCTCATATG 1849
||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1777 CCTTCGAATGGGTTAACCGGAAACTTGAATCAGGTTGATTTAAACGAAACGCCTGATATG 1836
Query 1850 CAAACCCAAAGACTTCTTACTCGTATGGTGGCTCTAATGAAAACAGTTGAGACTGGTCGA 1909
|||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1837 CAAACCAAAAGACTTCTTACTCGTATGGAGGCTCTAATGAAAACAGTTGATACTGGTCGA 1896
Query 1910 AGGTTTTTTCCATATGGTTCAGAGGTTCTAGATAAGTACATGGCTGAGTATATAGACGAC 1969
||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 1897 AGGTTTTTTCCATATGGCTCAGCGGTTCTAGATAGGTACATGGCTGAGTACATAGACGAA 1956
Query 1970 GACATCCTCGACGATTTCCATTTTGAGAAGGGATCTACACATGAAAGAAGATTGAAAAGA 2029
|||||||| || ||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1957 GACATCCTAGATGATTTACGTTTTGAGAAGGGATCTACACATGAAAGAAGATTGAAGAGA 2016
Query 2030 ATGAGATATAGAGAGCTTAAGGATGATGTCCAAAAGGCATATAGCAAAGACAAAGAGTCT 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 ATGAGATATAGAGAGCTTAAGGATGATGTCCAAAAGGCATATAGCAAAGACAAAGAGTCT 2076
Query 2090 AAGATTGCGCGGtcttgtctttctgcttcatcttctccttcttcttcttcCATAAGAGAT 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 AAGATTGCGCGGTCTTGTCTTTCTGCTTCATCTTCTCCTTCTTCTTCTTCCATAAGAGAT 2136
Query 2150 GACCTGCACAACACAACATGAAACTGCACCATAAGTCAAATGTAATTAGATATCTTTGTT 2209
|||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2137 GACCTGAACAACACAACATGAAAGTGCACCATAAGTTAAATGTAATTAGATATCTTTGTT 2196
Query 2210 AAAAGGGTTTTTTCTTTATGGATGTTACT-CAGATTTTATACAGATGCTTTAGGTTCAGT 2268
||||||||||| | ||| ||| |||| || ||||||||||||||||||||||||||||||
Sbjct 2197 AAAAGGGTTTTCT-TTT-TGGGTGTT-CTTCAGATTTTATACAGATGCTTTAGGTTCAGT 2253
Query 2269 TTCAATAAAGAGAGATGGATAGATAGATGTA---CA--A-GATTAGGAGTGCTGATTAAC 2322
|| ||||||||||||||||||| || ||||| || | |||||||| |||||||||||
Sbjct 2254 TTTAATAAAGAGAGATGGATAGTTAAATGTATAGCAGTAAGATTAGGAATGCTGATTAAC 2313
Query 2323 CCAAAACGTTCTAACTATACGCAATCTTTTGTTT 2356
||||||| ||||||||||| ||||||||||||||
Sbjct 2314 CCAAAACATTCTAACTATATGCAATCTTTTGTTT 2347
> Ahg890208 jgi|Araly1|890208|Al_scaffold_0007_2194
Length=1743
Score = 998 bits (540), Expect = 0.0
Identities = 1296/1649 (79%), Gaps = 100/1649 (6%)
Strand=Plus/Plus
Query 539 CTCAGCTCCAATCTT-GAGCAGCTTCTTAGTAATTCAGATTGTGATTACAGTGATGCAGA 597
|||||||| || ||| ||||||||||| | ||| ||||||| ||||| | || |||||
Sbjct 112 CTCAGCTCTAA-CTTGGAGCAGCTTCTCACTAACCCAGATTGCGATTATACCGACGCAGA 170
Query 598 GATCATTGTTGATG--G-TG-T--TCCAGTTG-GTGTTCATAGATGCATTTTAGCTGCAA 650
||||||| |||| | | | | || | || ||||||||||||| ||||||||||||
Sbjct 171 GATCATTATTGAAGAAGAGGCTAACCCTG-TGAGTGTTCATAGATGTGTTTTAGCTGCAA 229
Query 651 GAAGTAAGTTTTTCCAAGATTTGTTTAAGAAAGA-AAAGA-A-AATTTCGAAA-ACT--G 704
| || |||||||| | ||| |||| |||||||| ||||| | | | | ||| | | |
Sbjct 230 GGAGCAAGTTTTTTCTTGATCTGTTCAAGAAAGATAAAGATAGTAGTGC-AAAGAGTGAG 288
Query 705 -AGAAACCAAAGTATCAGTTGAGAGAGATGTTACCTTATGGAGCTGTTGCTCATGAAGCT 763
|||||||||||||||| ||| |||| |||||||||||||| ||| | | || ||
Sbjct 289 AAGAAACCAAAGTATCAAATGAAAGAGTTGTTACCTTATGGAAATGTGGGACGCGAGGCC 348
Query 764 TTCTTGTATTTCTTGAGTTATATATATACTGGGAGATTAAAGCCTTTTCCAT-TGGAGGT 822
||| || ||||||||| ||||| || |||||||| |||||||||||||| | | |||||
Sbjct 349 TTCCTGCATTTCTTGAACTATATCTACACTGGGAGGTTAAAGCCTTTTCC-TATCGAGGT 407
Query 823 TTCGACTTGTGTTGATCCAGTTTGTTCTCATGATTGTTGTCGACCTGCCATTGATTTTGT 882
|||||||||||||||| |||||||| ||||||||| |||| ||| |||||||||||||
Sbjct 408 TTCGACTTGTGTTGATTCAGTTTGTGCTCATGATTCTTGTAAACCGGCCATTGATTTTGC 467
Query 883 TGTTCAATTGATGTATGCTTCCTCTGT-TCTCCAAGTGCCTGAGCTAGTTTCATCTTTTC 941
|||| | |||||||||||||| | ||| | ||||| | || || || |||||||| ||||
Sbjct 468 TGTTGAGTTGATGTATGCTTCATTTGTGT-TCCAAATCCCGGACCTGGTTTCATCATTTC 526
Query 942 AGCGGCGGCTTTGTAACTTTG-TGGAGAAGACCCTTGTTGAGAATGTTCTTCCCAT--TC 998
||||| |||||||| || || ||| |||| | || ||||||||||||||||| || ||
Sbjct 527 AGCGGAAGCTTTGTAGCTATGTTGG-GAAGTCACTAGTTGAGAATGTTCTTCCGATCCTC 585
Query 999 TTATGGTTGC-TTTCAATTGTAAGTTGACTCAGCTTCTTGATCAGTGTATTGAGAGAGTG 1057
||| ||||| |||| ||||| | ||||| |||||||||||||| || || |||||||||
Sbjct 586 TTA--GTTGCGTTTC-ATTGTGATTTGACGCAGCTTCTTGATCAATGCATAGAGAGAGTG 642
Query 1058 GCGAGGTCAGATCTT-TACAGGTTCTGTATTGAAAAGGAAG-TTCCTCCCGAAGTAGCAG 1115
|| || |||||| || |||| ||||| |||||||||| || ||||| ||||||| | |
Sbjct 643 GCTAGATCAGAT-TTAGACAGATTCTGCATTGAAAAGG-AGCTTCCTTTCGAAGTATCGG 700
Query 1116 AGAAGATTAAACAGCTTCGACTTATATCCCCGCAAGACGAAGAAACCAGTCCCAAGATTT 1175
| || || |||||||||||| ||| | || | ||| | ||| | | || |
Sbjct 701 AAAAAATCAAACAGCTTCGAGTTA-A--GTCG---G-TGAACATACC--T--GAGGAGGT 749
Query 1176 CGGAGAAATTGCTTGAAAGAATCGGTAAAATTCTCAAGGCCTTGGATTCAGATGATGTTG 1235
||| |||| ||| || |||| ||| ||| | |||||||| ||||||||||||||||| |
Sbjct 750 -GGATAAATCGCTAGAGAGAACCGGGAAAGTACTCAAGGCATTGGATTCAGATGATGTGG 808
Query 1236 AGCTTGTGAAGCTTCTTTTGACTGAGTCAGATATCACTCTAGATCAAGCCAATGGTCTGC 1295
| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 809 AACTCGTGAAGCTTCTTTTGACTGAGTCAGATATAACTCTAGACCAAGCCAATGGTCTGC 868
Query 1296 ATTATTCTGTTG-TGTATAGTGATCCGAAAGTTGTTG-CCGAGATTCTTGCTCTGGATAT 1353
||||| | || | | || ||||||||||||||||| | || || |||||| ||| ||||
Sbjct 869 ATTATGCAGTGGCT-TACAGTGATCCGAAAGTTGT-GACCCAGGTTCTTGATCTAAATAT 926
Query 1354 GGGTGATGTGAACTACAGGAATTCCCG-GGGT-TACACGGTTCTTCATTTTGCTGCGATG 1411
|| |||||| || | ||| |||||| | |||| |||| | |||||||| ||||||| |||
Sbjct 927 GGCTGATGTTAATTTCAGAAATTCCAGAGGGTATACA-G-TTCTTCATATTGCTGCTATG 984
Query 1412 CGTAGAGAGCCATCGATCATTATATCGCTTAT-CGATAAAGGCGC-CAATGCATCTGAGT 1469
|||||||||||| | || |||||| | ||||| | | ||||| || || ||| || || |
Sbjct 985 CGTAGAGAGCCAACAATTATTATACCACTTATTCAA-AAAGGAGCTCA-TGCTTCGGA-T 1041
Query 1470 TT-ACATCTGACGGACGTAGCGCAGTTAATATAT-TAAGAAGACTGACAAATCCAAAGGA 1527
|| || | ||| ||||| || || |||||||||| || || |||| || | ||||| ||
Sbjct 1042 TTCACGTTTGATGGACGCAGTGCGGTTAATATATGTAGGA-GACTCACTAGGCCAAAAGA 1100
Query 1528 TTATCATACCAAAACAGCTAAAGGGCGTGAATCTAGTAAAG-CCAGGTTATGCATCGATA 1586
|||||||| |||||| || |||| ||| ||||||||| || | |||||||||||||
Sbjct 1101 TTATCATAGCAAAAC--CTCAAGGAAA-GAACCTAGTAAAGACC-GCTTATGCATCGATA 1156
Query 1587 TCTTGGAAAGAGAAATCAGGAAG-AACCCCAT-GGTTC-TAG--ATACACCAA-TGTGTT 1640
|||||||||| ||||| || ||| || || || |||| | | ||||||| | | ||||
Sbjct 1157 TCTTGGAAAGGGAAATTAG-AAGGAATCC-ATTGGTTAGTGGGGATACACCCACT-TGTT 1213
Query 1641 CC-ATTTCTATGCCTGAAGATCTCCAGATGAGACTGTTGTACCTAGAAAAGAGAGTGGGG 1699
|| ||| | ||||| || |||||||| ||||| |||| ||| |||||||| |||||||
Sbjct 1214 CCCATT-CGATGCCCGAGGATCTCCAAATGAGGTTGTTATACTTAGAAAAGCGAGTGGGA 1272
Query 1700 CTTGCTCAGTTGTTCTTTCCAACGGAAGCTAAAGTTGCTATGGACATTGGTAACGTAGAA 1759
||||||||||||||||| ||| | |||||||| || || |||||| ||| ||| || |||
Sbjct 1273 CTTGCTCAGTTGTTCTTCCCAGCAGAAGCTAATGTGGCCATGGACGTTGCTAATGTTGAA 1332
Query 1760 GGTACAAGTGAGTTCACGGGT-TTGT--C---ACCTCCTTCGAGTGGGTT-AACCGGAAA 1812
|| ||||| |||| ||| ||| || | | |||||| || | ||| | |||||||||
Sbjct 1333 GGGACAAGCGAGTGCACAGGTCTTCTAACTCCACCTCCATCAAATGG-TACAACCGGAAA 1391
Query 1813 CTTGAGTCAGGTTGATTTAAACGAAACTCCTCATATGCAAACCCAAAGACTTCTTACTCG 1872
|||| || | || |||||||| ||||| ||| || ||||||| ||||| | ||||| ||
Sbjct 1392 CTTGGGTAAAGTCGATTTAAATGAAACGCCTTATGTGCAAACGAAAAGAATGCTTACACG 1451
Query 1873 TATGGTGGCTCTAATGAAAACAGTTGAGACTGGTCGAAGGTTTTTTCCATATGGTTCAGA 1932
||||| || || ||||||||||||||||| ||||| |||| ||| |||| | |||| ||
Sbjct 1452 TATGGAAGCCCTCATGAAAACAGTTGAGACAGGTCGGAGGTATTTCCCATCTTGTTCTGA 1511
Query 1933 GGTTCTAGATAAGTACATGGCTGAGTATATAGACGACGACATCC-TCGACGATTTC-CAT 1990
|||||| |||| | |||||| ||||||||| ||||| ||||||| | || || || |||
Sbjct 1512 GGTTCTTGATAGGCACATGGATGAGTATATGGACGAAGACATCCCT-GAT-ATGTCACAT 1569
Query 1991 TTTGAGAAGGG-A-TCT-ACACATGAAAGAAGATTGAAAAGAATGAGATATAGA-GAGCT 2046
|| || || | | | | | | || |||||| ||| ||||||||||||| | |||||
Sbjct 1570 CCCGAAAAAGGCACTGTGA-A-A-GAGAGAAGACAGAAGAGAATGAGATATA-ACGAGCT 1625
Query 2047 TAAGGATGATGTCCA-AAAGGCATATAGCAAAGACAAAGAGTCTAAGATTGCGCGGtctt 2105
||| | || || | |||| | |||||||||||||||||| | ||||| ||||||||||
Sbjct 1626 GAAGAACGACGTTAAGAAAG-CGTATAGCAAAGACAAAGAGGCCAAGATCGCGCGGTCTT 1684
Query 2106 gtctttctgcttcatcttctccttcttct 2134
|||||||| ||||||| | ||||||||
Sbjct 1685 GTCTTTCTTCTTCATCACCAGCTTCTTCT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5