BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45113.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948532 jgi|Araly1|948532|scaffold_800419.1 1829 0.0
> Ahg948532 jgi|Araly1|948532|scaffold_800419.1
Length=1432
Score = 1829 bits (990), Expect = 0.0
Identities = 1163/1248 (93%), Gaps = 6/1248 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCCCGTGACAAGATTGGTCGT 60
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 168 ATGTTTGAGAACTTTCATGTTCTTTGCTATTATGGGATTCCGCGTGGCAAGATTGGCCGC 227
Query 61 TTGTATAAGGAAGCAAGAGAGATTTTTGTATACGAGAATGGGGTTTTGGCATCGAAACTT 120
||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 228 ATGTTTAAAGAAGCAAGAGAGATTTTTGGATACGAGAATGGGGTTTTGGCGTCGAAACTT 287
Query 121 GAACCTTATGAGATCTTGGTTCTTAGAAAGGCTATAGTCATTAAGCTTGTTACTTGTTGC 180
||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 288 GAAGCTTATGAGAGCTTGGTTCTTAGTAAGCCTATAGTCATTAAGCTTGTTACTTGTTGC 347
Query 181 CCGTTGCTTCTGGTTGGTGGCATTGATTGTGAGTTTGTTTCTGTGGTAAATAAGTTGAAG 240
|| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 348 CCATTGCTTCTGGTTGGTGGCATTGATAGTGAGTTTGTTTCTGTGGTCAATAAGTTGAAG 407
Query 241 GGATTAAACTTAGGATGCGATTGGCTTGCGCGGTATTTGTCAGTTAGAAAAACATATAAC 300
||| ||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 408 GGAGTAAACATAGGATGTGATTGGCTTGCGCGGTATTTGTCGGATAGAAAAACATATAAC 467
Query 301 TGGCGCCGGATTCTTGAGACAATGGAGCTCCTTGAGAAGGTGGGGTTTAAAGA-GAAGAA 359
|||| ||||||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct 468 TGGCTTCGGATTCTTGAGACAATGGAGCTCCTTGATAAGGTGGGGTTTAAGGATG-AGAG 526
Query 360 GTTGAGTAATCTTTTAAAAGCGTATCCAGATTTGGTAGGTGAAACTTCTGGCAATAAAGC 419
|||||||| |||||| ||||| |||||||||||||| ||||| ||||||| ||||||||
Sbjct 527 GTTGAGTAGTCTTTTGAAAGCATATCCAGATTTGGTGGGTGAGGCTTCTGGAAATAAAGC 586
Query 420 TTATATTATGTTTGAAAAGTTTCATAAAGTTGGACTTCAGATGAATGAAATTGATAAATT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 587 TTATATTATGTTTGAAAAGTTTCATAAAGTTGGACTTCAGATGAATGAAATCGATGATTT 646
Query 480 ACTGATAGACAACTCC-GAGATGTTATTAGAGAAATCTGTAAAAAGAATTTTAGAGGCGT 538
| ||| ||||||| || |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 647 AGTGACAGACAAC-CCAGAGATGCTATTAGAGAAATCTGTAAAAAGAATTTTAGAGACGT 705
Query 539 TGAAATTCTTGAAATGTATCAGAATAGAAAAGCAGTTTGTCGTTAGGTTTTTACAGTGTC 598
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 706 TGAAATTCTTGAAACGTATCAGAATGGAAAAGCAGTTTGTCGTAAGGTTTTTACTGTGTC 765
Query 599 ACATGAAGCATATCTGTTCATCCTCTTTGCTAGTACCTAGAGCTGTTTGGAATAGATTGA 658
||||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 766 ACATGAAACTTATCTGTTCATCCTCTCTGCTAGGACCTAGAGCTGTTTGGAATAGATTGA 825
Query 659 AAATCAGAAGAGATGAGTTATGTCAGATCATTAAGGAAGAGCCTTTGAGATTGTTCAGTA 718
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AAATCGGAAGAGACCAGTTATGTCAGATCATTAAGGAAGAGCCTTTGAGATTGTTCAGTT 885
Query 719 TAGCTTCTAAAACTAATAA-AGGTAGAATTGAACTTGATTCACTGGATTCGAGGAATGCA 777
||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct 886 TAGCTTCTAAAACTAATAATA-GTAGAATTAAACTTGATTCACTGGATTTGAGGAATGCA 944
Query 778 GAGAAGACGACATTCTTGTTGAAGTTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGG 837
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 945 GAGAAGACGGCATTCTTGTTGAAGCTAGGGTATGTAGAGAATTCCGATGAGATGGTGAGA 1004
Query 838 GCTCTGAAAAAGTTCCAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTG 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GCTCTGAAAAAGTTTCAAGGGAGGGGAGATGAGCTACAGGAGAGATTTGATTGCTTTGTG 1064
Query 898 AAGGCTGGTTTGGACTATAATGTGGTTAGCCAGCTTGTTAAGCGGGCGCCTCATATACTT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1065 AAGGCTGGTTTGGACTATAATGTGGTTAGCCAGCTTGTTAAGCGGGCGCCTCATATGCTT 1124
Query 958 AACCGGCCGAAAGATATCATAGAAAAGAAGATCATTATGCTAATAGATTATTTGGTTTAT 1017
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1125 AACCGGCCGAAAGGTATCATAGAAAAGAAGATCAATATGCTAACAGATTATTTGGGTTAT 1184
Query 1018 CCAATAGAATCCGTGATAGAGTCCCCAACATATTTGTGTTATAGTATGAAGAGAATACAT 1077
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1185 CCAATTGAATCCGTGATAGAGTCCCCAACATATTTGTGTTATAGTATGGAGAGAATACAT 1244
Query 1078 CAGAGATTCACAATGTACATTTGGTTGAGGGAAAGAGATGCAGTAATACCGAGGCTGACA 1137
|| |||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1245 CACAGATTCTCAATGTACATTTGGTTGAAAGAAAGAGATGCAGCAATGCCGAGGCTGACA 1304
Query 1138 CTAGGCACTGTTGTCGGTATTTCTAATACCCTTATTGTGCCATACTTTGTCAATACCCAC 1197
||||||||| | ||||||||||| ||||| ||| ||||| ||||||||||||||||||||
Sbjct 1305 CTAGGCACTATAGTCGGTATTTCCAATACACTTTTTGTGTCATACTTTGTCAATACCCAC 1364
Query 1198 CCGGAAGGTCCAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGA 1245
|| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1365 CCTGAAGGTCGAGCTACTTGGGAAAATATAAAGAAAGCATCTACCTGA 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5