BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45120.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494467 jgi|Araly1|494467|fgenesh2_kg.8__283__AT5G45120.1 1853 0.0
> Ahg494467 jgi|Araly1|494467|fgenesh2_kg.8__283__AT5G45120.1
Length=1258
Score = 1853 bits (1003), Expect = 0.0
Identities = 1174/1259 (93%), Gaps = 2/1259 (0%)
Strand=Plus/Plus
Query 217 ATGGAACCCTTGAGAGAAGTGAGAGATGGTTATTTGATAACCTTAAACATTGGAACACCT 276
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCCTTGAGAGAAGTGAGAGATGGTTATTTGATAACCTTAAACATTGGAACACCT 60
Query 277 CCACAAGCAGTTCAAGTGTACTTGGACACAGGAAGTGATCTCACATGGGTCCCATGTGGG 336
||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||||||||
Sbjct 61 CCACAAGCAGTCCAAGTGTACATGGACACTGGTAGTGATCTCACTTGGGTCCCATGTGGG 120
Query 337 AATCTAAGTTTTGATTGCATTGAATGTTATGATCTCAAGAACAACGATCTAAAATCACCA 396
|||||||||||||||||||| || ||| |||||||||||| |||| ||||||||||| ||
Sbjct 121 AATCTAAGTTTTGATTGCATAGACTGTAATGATCTCAAGAGCAACAATCTAAAATCATCA 180
Query 397 TCGGTCTTTTCTCCTCTTCATTCATCTACATCTTTTAGAGATTCTTGTGCTAGTTCCTTT 456
|| |||| || |||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 181 TCAATCTTCTCCCCTCTTCACTCATCTTCATCTTTTAGAGCCTCTTGCGCTAGTTCCTTT 240
Query 457 TGCGTCGAGATCCATAGCTCAGACAATCCTTTTGACCCTTGTGCAGTCGCCGGCTGCTCT 516
|||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 241 TGCGCCGAGATCCATAGCTCAGACAATCCTTTTGACCCTTGTGCAATCGCTGGCTGCTCT 300
Query 517 GTGAGTATGCTTCTCAAGTCTACTTGCGTAAGGCCTTGTCCTTCCTTTGCTTATACTTAT 576
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GTGAGTATGCTTCTCAAGTCCACTTGCATAAGGCCTTGTCCTTCCTTTGCTTATACTTAT 360
Query 577 GGTGAAGGTGGTCTTATCTCTGGGATACTAACCAGGGATATACTGAAGGCTCGAACTAGG 636
||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 361 GGTGAAGGTGGTCTTGTCTCTGGAATACTAACCAGAGATATACTAAAGGCTCGAACCAGG 420
Query 637 GATGTTCCAAGGTTTTCTTTTGGCTGCGTAACGTCCACTTACCGGGAACCTATTGGCATT 696
||||| |||||||| |||||||| || |||||||||||||||| |||||||||||||||
Sbjct 421 GATGTCCCAAGGTTCTCTTTTGGTTGTGTAACGTCCACTTACCACGAACCTATTGGCATT 480
Query 697 GCTGGATTTGGAAGAGGTTTACTCTCTCTCCCTTCGCAACTAGGCTTTCTTGAAAAGGGA 756
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 481 GCCGGATTTGGAAGAGGTTTACTCTCTCTCCCTTCACAGTTAGGCTTTCTTGAAAAGGGA 540
Query 757 TTTTCCCATTGTTTCTTGCCTTTCAAGTTTGTCAACAATCCTAACATCTCTAGCCCTTTG 816
||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 541 TTTTCTCACTGTTTCTTGCCTTTCAAGTTTGTCAACAACCCTAACATCTCAAGCCCTTTG 600
Query 817 ATCCTAGGAGCCTCTGCTTTATCGATAAATCTAACCGACTCTTTGCAATTTACTCCCATG 876
|||||||||||||| |||||||| |||||||| || |||||| |||| ||||||||||||
Sbjct 601 ATCCTAGGAGCCTCCGCTTTATCAATAAATCTCACGGACTCTCTGCAGTTTACTCCCATG 660
Query 877 TTGAATACTCCAATGTATCCCAACAGCTACTACATCGGTTTAGAATCAATTACAATAGGC 936
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TTGAATACTCCAGTGTACCCCAACAGCTACTATATCGGTTTAGAATCAATTACAATAGGC 720
Query 937 ACAAATATCACTCCCACACAAGTTCCTTTAACCTTAAGACAATTTGATTCACAAGGAAAT 996
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACAAATATCACTCCTACACAAGTTCCTTTAACCTTAAGACAATTTGATTCACAAGGAAAC 780
Query 997 GGAGGAATGTTGGTCGATTCGGGTACGACTTACACACATTTACCCGAA-CCTTTCTACTC 1055
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 781 GGAGGAATGTTGGTTGATTCAGGTACGACTTACACACATTTACCA-AATCCTTTCTACTC 839
Query 1056 ACAACTCCTCACAACTCTCCAATCAACAATCACATACCCAAGAGCCACTGAAACTGAATC 1115
|||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 840 ACAACTCCTCACAATTCTCCAATCAACCATCACATACCCGAGAGCCACGGAAACTGAATC 899
Query 1116 AAGAACAGGCTTTGATCTCTGCTACAAAGTCCCGTGTCCTAACAACAATCTCACTAGCCT 1175
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 900 AAGAACAGGATTTGATCTCTGCTACAAGGTCCCATGTCCTAACAACAATCTCACTAGCCT 959
Query 1176 CGAAAACGATGTAATGATGATATTTCCTTCAATTACATTCCATTTCTTGAACAATGCAAC 1235
||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 960 AGAAAATGATGTAATGATGGTCTTTCCTTCAATTACATTCAATTTCTTGAACAATGCAAC 1019
Query 1236 CTTACTTCTCCCGCAAGGTAACTCTTTTTACGCAATGAGCGCCCCTAGCGATGGTTCCGT 1295
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1020 CTTACTTCTCCCGCAAGGTAACTCATTTTATGCAATGAGCGCCCCTAGCGATGGTTCTGT 1079
Query 1296 GGTGCAATGCTTGTTGTTTCAGAACATGGAAGATGGAGACTACGGACCGGCCGGAGTTTT 1355
||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||
Sbjct 1080 GGTGCAATGCTTGTTGTTTCAGAACATGGAAGATGGAAATTACGGACCTGCAGGAGTTTT 1139
Query 1356 TGGGAGCTTTCAGCAGCAGAATGTGAAAGTTGTGTATGATTTGGAGAAAGAGAGAATTGG 1415
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 TGGGAGCTTTCAGCAACAAAATGTGAAAGTTGTGTATGATTTGGAGAAAGAGAGAATAGG 1199
Query 1416 CTTCCAAGCTATGGATTGTGTCTTAGAAGCTGCTTCACATGGACTCAACCAAGGCTCAT 1474
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTTCAAGCTATGGATTGTGTCTTAGAAGCTGCTTCACATGGACTCAACCAAGGCTCAT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5