BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45130.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1 1535 0.0
Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1 756 0.0
Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277 529 2e-149
Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007 521 4e-147
Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551 516 2e-145
Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928 219 5e-56
> Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1
Length=1068
Score = 1535 bits (831), Expect = 0.0
Identities = 1014/1096 (93%), Gaps = 37/1096 (3%)
Strand=Plus/Plus
Query 30 tttttttGCTTTCGTCTTCAagagagagagagagagagatacaaagagagaAATTTGGTT 89
||||||||||||||||||| | | ||||||||||||| | ||||||||||||||||
Sbjct 1 TTTTTTTGCTTTCGTCTTC--G-G-GAGAGAGAGAGAG----AGAGAGAGAAATTTGGTT 52
Query 90 GTTTGTTGACGGAAGCTTCTTCGGTCTCTCTTCTCCGTCTTACGATTGTCAACGCGTGGT 149
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 53 GTTTGTTGAC-GAAGCTTCTTCGGTCTCTCTTCTCCGTCTTTCGATTGTCAACGCG-GCT 110
Query 150 TCCATCTTCAATTTTGTTTCTATTTTAGCAGAAGTTTCTCGAGCTTCAAATACTGTTTCA 209
| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 111 TTCATCTTCAATTTTCTTTCTATTTTAGCAGAACATTCTCCAGCTTCAAATACTGTATC- 169
Query 210 GAT-CAATCAATCAGTCAATCATGGCTAGCTCTGGAAACAAGAACATCAACGCCAAATTG 268
|| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 -ATCCGATCAATCAATC-ATCATGGCTAGCTCTGGAAACAAGAACATCAACGCCAAATTG 227
Query 269 GTATTACTAGGAGATGTTGGAGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGAT 328
|| ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct 228 GTGTTACTAGGAGATGTTGGGGCTGGAAAATCAAGTCTTGTGCTGCGTTTTGTTAAAGAT 287
Query 329 CAGTTTGTTGAATTTCAGGAATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCT 388
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 288 CAGTTTGTTGAATTCCAGGAATCAACCATAGGTGCAGCTTTTTTCTCTCAAACATTGGCT 347
Query 389 GTGAATGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCAC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 GTGAATGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGGTACCAT 407
Query 449 AGTTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACT 508
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGCTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACA 467
Query 509 AATCAAGCCTCATTTGAGAGGGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAAC 568
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 468 AATCAAGCGTCATTTGAGAGGGCGAAGAAATGGGTTCAAGAACTGCAGGCACAAGGTAAC 527
Query 569 CCTAATATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTG 628
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 CCTAATATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAGGTG 587
Query 629 TCTGCAGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTTATGGAAACCTCA 688
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 588 TCTGCAGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTCATGGAAACCTCA 647
Query 689 GCGAAGACCGCAACAAATGTCAAAGACATATTCTACGAAATAGCGAAAAGGCTACCACGT 748
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 648 GCGAAGACCGCAACAAATGTCAAAGACATATTCTACGAAATCGCGAAAAGGCTACCGCGT 707
Query 749 GTACAGCCAGCTGAAAACCCGACAGGAATGGTTCTCCCAAACGGGCCAGGGGCTACGGCA 808
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 708 GTACAGCCAGCTGAAAACCCAACAGGAATGGTTCTCCCAAACGGGCCAGGGGCTACAGCA 767
Query 809 GTGAGTTCATCGTGTTGTGCTTAGATTCGTACCTGAAGAGAGATCTCATTTGGTTAGTCA 868
|||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 768 GTGAGTTCATCGTGTTGTGCTTAGTTTCGTACCTTAAGAGAGATCTCTTTTGGTTAGTCG 827
Query 869 CATAGTAGAGAACATCTG-GACTTTCATGTGTTTGCTTCTTCTTCGTCTTTGTTACTTTA 927
|||||||||||||||| | |||||| ||||||||||||| |||||||||||||||
Sbjct 828 CATAGTAGAGAACATC-GAGACTTT-ATGTGTTTGCTTC------GTCTTTGTTACTTTA 879
Query 928 CTTTGCTTGCATTGACAACAACAACAGTGTATATCATGATGATACTTATTCTGCCTTTGT 987
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 880 CTTTTCTTGCATTGACAACAACAACAGTGTATATCATGATGATACTT---CTGCCTTTGT 936
Query 988 GAAATCTGAAGATATTTGTATTTGGAGAGATTtatatatatatatCTCTTTTGTAATTAG 1047
| ||| ||||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct 937 GGAATATGAAGATATTTGTATTTGGAGAGATTTAT-T-TGGAT--CTCTTTTGTAATTAG 992
Query 1048 AAAACAAAACTTAGTC-CGaaaaa-aa---TGTGCTT--ATCTTTCGTTTATGTTTTAAG 1100
| | || |||||||| | ||||| || ||||||| |||||||||||||||||||||
Sbjct 993 ATATCATAACTTAGTGTCAAAAAAGAAAAATGTGCTTCCATCTTTCGTTTATGTTTTAAG 1052
Query 1101 TGAATGCTCAGATTTA 1116
|||||||||||| |||
Sbjct 1053 TGAATGCTCAGAGTTA 1068
> Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1
Length=955
Score = 756 bits (409), Expect = 0.0
Identities = 608/702 (87%), Gaps = 21/702 (3%)
Strand=Plus/Plus
Query 226 AATCATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATG 284
|||||||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||
Sbjct 119 AATCATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATG 177
Query 285 TTGGAGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTC 344
|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
Sbjct 178 TTGGAGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCC 237
Query 345 AGGAATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTG 404
||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||
Sbjct 238 AGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACATTAGCTGTCAACGATGCTACTG 297
Query 405 TGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGT 464
| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 298 TCAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGT 357
Query 465 ACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTG 524
||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||| ||||
Sbjct 358 ACTACAGGGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTG 417
Query 525 AGAGGGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGG 584
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGG 477
Query 585 CTCTTGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTGTCTGCAGAGGAGGCAG 644
| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 478 CCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAGAGGAGGCAC 537
Query 645 AGATATATGCTCAAGAGAACAGCCTTTTCTTTATGGAAACCTCAGCGAAGACCGCAACAA 704
| | |||||||||||| ||| | |||||||| |||||||| ||||| || ||||| || |
Sbjct 538 AAACATATGCTCAAGAAAACGGTCTTTTCTTCATGGAAACATCAGCAAAAACCGCCACTA 597
Query 705 ATGTCAAAGACATATTCTACGAAATAGCGAA-AAGGCTACCACGTGTACAGCCAGCTGAA 763
|||||||||| |||||||| ||||| || || ||||||||| || ||||||||| | |||
Sbjct 598 ATGTCAAAGAGATATTCTATGAAATCGC-AAGAAGGCTACCGCGAGTACAGCCAACAGAA 656
Query 764 AACCCGACAGGAATGGTTCTCCCAAAC-GGGCCAGGGGCTACGGCAGTGAGTTCATCGTG 822
||||| |||||||||||||||||| || |||||| || || ||||||||| ||||| ||
Sbjct 657 AACCCAACAGGAATGGTTCTCCCAGACAGGGCCATGGA-TAGGGCAGTGAGCTCATCTTG 715
Query 823 TTGTGCTTAGATTCGTA-C-CTGAAGA-GAGATCTCATTTGGTTAGTCACATAGTAGAGA 879
|||||||||| || || | || || | || |||| |||||| ||| || | | || |
Sbjct 716 TTGTGCTTAG-TTA-TATCTCTTAAAAAGAAATCT--TTTGGTCAGTGACTTT-T-GA-A 768
Query 880 ACATCTGGACTTTCATGTGTTTGCTTCTTCTTCGTCTTTGTT 921
| ||||||| | ||||||||| | ||||| | |||||||
Sbjct 769 GT-TATGGACTT-C-TGTGTTTGCGT-TTCTTTG-CTTTGTT 805
> Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277
Length=441
Score = 529 bits (286), Expect = 2e-149
Identities = 367/407 (90%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
|||||| || |||||||||||| ||| |||||||| ||||| ||||| |||||||||||
Sbjct 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAATTTGGTGTTACTTGGAGATGTTGG 59
Query 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
Query 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA 408
||||||||||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAA 179
Query 409 GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA 468
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 180 GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA 239
Query 469 CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG 528
||| ||||| |||||||| || ||||||||||| |||| ||||| ||||| ||||||||
Sbjct 240 CAGAGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAG 299
Query 529 GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT 588
||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 300 GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGATAACCCTAATATGGTCATGGCCCT 359
Query 589 TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTGTCTGCAG 635
||||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 360 TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAG 406
> Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007
Length=435
Score = 521 bits (282), Expect = 4e-147
Identities = 359/397 (90%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
|||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG 59
Query 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
Query 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA 408
||||||||||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAA 179
Query 409 GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA 468
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 180 GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA 239
Query 469 CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG 528
||| ||||| |||||||| || ||||| ||||| |||| ||||| ||||| ||||||||
Sbjct 240 CAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCCTCGTTTGAGAG 299
Query 529 GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT 588
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCT 359
Query 589 TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAG 625
||||||||||||| ||||||||||||| |||||||||
Sbjct 360 TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
> Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551
Length=435
Score = 516 bits (279), Expect = 2e-145
Identities = 358/397 (90%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
|||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG 59
Query 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
Query 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA 408
||||||||||||||| ||||||||||| ||||| || ||| | || ||||| ||||| ||
Sbjct 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTGTCAA 179
Query 409 GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA 468
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 180 GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA 239
Query 469 CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG 528
||| |||| |||||||| || ||||||||||| |||| ||||| ||||| ||||||||
Sbjct 240 CAGAGGTGTTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAG 299
Query 529 GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT 588
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCT 359
Query 589 TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAG 625
||||||||||||| ||||||||||||| |||||||||
Sbjct 360 TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
> Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928
Length=312
Score = 219 bits (118), Expect = 5e-56
Identities = 157/176 (89%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
|||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG 59
Query 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
Query 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTG 404
||||||||||||||| ||||||||||| ||||| || ||| | || ||||| ||||
Sbjct 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTG 175
Score = 169 bits (91), Expect = 5e-41
Identities = 117/130 (90%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 437 GAACGATACCACAGTTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTC 496
||||| ||||| ||||||||||||||||||||||| |||| |||||||| || ||||||
Sbjct 175 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGTTGCTGCTGCAATCATTGTC 234
Query 497 TTTGACATTACTAATCAAGCCTCATTTGAGAGGGCGAAGAAATGGGTTCAGGAACTGCAG 556
||||| |||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 235 TTTGATGTTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 294
Query 557 GCACAAGGTA 566
||||||||||
Sbjct 295 GCACAAGGTA 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5