BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45150.1
Length=2874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494464 jgi|Araly1|494464|fgenesh2_kg.8__280__AT5G45150.1 2785 0.0
Ahg948527 jgi|Araly1|948527|scaffold_800414.1 520 3e-146
Ahg906318 jgi|Araly1|906318|Al_scaffold_0003_3446 71.3 4e-11
> Ahg494464 jgi|Araly1|494464|fgenesh2_kg.8__280__AT5G45150.1
Length=2679
Score = 2785 bits (1508), Expect = 0.0
Identities = 2150/2441 (88%), Gaps = 119/2441 (5%)
Strand=Plus/Plus
Query 449 AGATCTTTAGGAGTCTTTTGGAGCCAATATATACACCGGATGATTTACTGCTGCAACCTA 508
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 251 AGATCTTTAGGAGTCTTTTGGAGCCAATATATACACCGGAGGATTTACGGATGCAACCTA 310
Query 509 AACTACCATTTCTTACGCTTTTTCGCTTAGCTGATAAACACGGC-AGCGAATCGACTTCA 567
||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 311 AACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATCGACTTCA 370
Query 568 GGTATTCGAAAGATGACGACATC-AACAAAAATATTGCTGAGGAATAAAGATTGTCTAGA 626
||||||||||||||||||||| | ||| || |||||||||||| || | ||| | |
Sbjct 371 GGTATTCGAAAGATGACGACAGCAAAC-AACATATTGCTGAGG-AT----A--GTCCACA 422
Query 627 TG-TGGACCTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTTGCTCCACTG--------- 676
|| || ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 TGTTGAACC-TGAAGATGTGAAAGGGAAGTCGTTTGTGATTTGCTCCACTGAAAATCTCC 481
Query 677 AA-T------T--A-T-T-TTCTCTGTCCACTGTTTCTGAGAACTCTTTAACTGATGAAA 724
|| | | | | | |||||||||||| | ||||||||||||||| | |||||||
Sbjct 482 AATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCTGAGAACTCTTTACCCGATGAAA 541
Query 725 TGTCACAAGAAGAGGTGGTTATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTG 783
|| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 542 TGACACAAGAAGAAATGGTTTTTGATGAGGATAGTCC-AGATGTTGAACCTGAAGATGTG 600
Query 784 AAAGGGAAGTTGTTTGAGATTTGCTATACGAGAAAGCTCCAAATACAGACTGGTTCCTCT 843
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 601 AAACGGAAGTTGTTTGAGATTTGCTATACTAGAAAGCTCCAAATACAGACTAGTTCCTCT 660
Query 844 GGAAACCCTTTAACCTATGAAATGACTACAAAACAAATGGTTGTTGATAAGGATAGTCTA 903
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAAACCCTTTAACCTATGAAATGACTACAAAACAAATGGTTGTTGATAAGGATAGTCTA 720
Query 904 CATGTGGAACCCGTAAATGGGAGAGGGGAGTTGATTGAGATTTGCACCAAAAATAAGTGG 963
||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 CATGTTGAACCCACAGATGGGAGAGGGAAGTTGATTGAGATTTGCACCAAAAATAAGTGG 780
Query 964 CCAAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGACCAAAAAATGAGCCCAAATTTGTT 1023
|| |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||
Sbjct 781 CCGAGGCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAAAAAATGAGCAGAAATTTGTT 840
Query 1024 TGTTCAGTAAAGATTGAGATACCAAATATAGAAGGAACCTTTCACATGAAGGGAGATATT 1083
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 TGTTCAGTTAAGATTGAGATACCAAATATAGAAGGTTCCTTTCACATGAAGGGAGATGCA 900
Query 1084 AAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCTACCACATGATAAGAGCCTTGGAA 1143
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 901 AAATCAAAGAAAAAGCAAGCAGAAAACTCCTCAGCATACCACATGATAAGAGCCTTGGAA 960
Query 1144 TCTTCTCTAGTGAGTCTTGTCATAAGTAATTTACAAAAGCCGAAAAGTTTAGATGAGAAG 1203
||||||||| |||||||||||||||||||| | |||| |||| |||||||||||||||||
Sbjct 961 TCTTCTCTAATGAGTCTTGTCATAAGTAATCTGCAAATGCCGGAAAGTTTAGATGAGAAG 1020
Query 1204 AATAATCCATTGCTCTTCAGCTCAGAGATGGATTC---TTCAGTGGAAGCAGTGGAGAAG 1260
||| | | || || || ||||||||| ||||||||||||||||||||||
Sbjct 1021 AAT--T--A----TC--CA--TC---GATGGATTCTGATTCAGTGGAAGCAGTGGAGAAG 1065
Query 1261 ATCTTGAATTACAGTTTCGTGAACAAGACTCTTCTGAAAGAACTGCTTACACACAATAAT 1320
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
Sbjct 1066 ATCTTGAATTACAGTTTCGTGAACAAGAATCTTCTGAATGAACTGCTAACACACAATACT 1125
Query 1321 TCACCTTTATTCCAGGGGCTTATGTTCGTTGGTGAGTCGGCTCTTTCTCTCGCCTTTACG 1380
||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 1126 TCACCTTTATTCCAGCGGCTTATGTTCGTCGGTGAGCCGGCTCTTTCTCTTGCCTTTACG 1185
Query 1381 AAACACTTATACCTCACTTACCCTATGCTCGAACCCAAGGATTTGTCTGTGTTGCGAGAT 1440
||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||||
Sbjct 1186 AAACACTTATACCTCACGTACCCTAAGCTTGAACCCAAGGATTTGTCTCTGCTGCGAGAT 1245
Query 1441 GCGAATACATGTCATGACAAATATGCTTGTGTCGCCGTCAAAAAAGGCATTTACCAATCC 1500
|| ||| ||||| | |||| ||| ||| | || ||||||||||||||||| ||||| | |
Sbjct 1246 GCTAATGCATGTAACGACAGATACGCTCGCGTAGCCGTCAAAAAAGGCATCTACCAGTTC 1305
Query 1501 TTTATAGGCAGTGTCCCAAAGCCAGAAAAAATGACTACAGATTTCATAGAGT-TGATGGG 1559
||||| ||| ||| ||||||||||| ||||| | ||| |||||||| | |||||||
Sbjct 1306 ATTATAAGCAATGTTGAAAAGCCAGAAAGAATGATTTTAGACTTCATAGA-TATGATGGG 1364
Query 1560 C--A-AAGA--A----GAT---GATCCATACAGAGTTGTGAAAGCCCCCAAAATTCTCGT 1607
| | |||| | ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1365 CAAAGAAGATGATCCTGATCCAGATCCATACAGAGTTGTGAAAGCCCCAAAAATTCTCGC 1424
Query 1608 TAATCTTCTAGCTGGTGTAGCTGGAGCTGTTTATATTGATGTGAAATATAACGTACAACG 1667
||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1425 TAATCTTGTAGCTGCTGTAGCTGGAGCTGTTTATATTGATGTGAATTATAATGTGCAACG 1484
Query 1668 ACTCTTGGAGATCTTCAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGAT 1727
||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1485 ACTCTGGGAGATCTTCAGGGGTCTCTTCGAGCCAATATATACACTGGATGATTTACGGAT 1544
Query 1728 GCAACTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAAT 1787
||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1545 GCAGCCTAAACCACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACATGGCAAGCGAAT 1604
Query 1788 CGACTTCAGGTATTCGAAAGATGGTGGCAGCAGAAAAAATATTGCTCAGGTATATATGGA 1847
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| | ||
Sbjct 1605 CGACTTCAGGTATTCGAAAGTTGATGGCAGCAGAAAAAATATTGCTCAGGTATATCTTGA 1664
Query 1848 TGATATGTTTATAGCTTCCGGTTGTGCTAAACGTATAGATACCGCAAAGTTGCTTGCTGC 1907
|||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||
Sbjct 1665 CGATATGTTTATAGCTTCCGGGTGTTCTAAACGTATCGATACCGCAAAGCTGCTTGCTGC 1724
Query 1908 TGAGGAAGCGATACAGAAGCTCTCAGAATGTATGCCCATCGAAAAGATTATTCATCAAGA 1967
|||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1725 TGAGGAAGCGTTGCAGAAGCTGTCAGAATGTATGCTCATCGAAAAGATTATTCATCAAGA 1784
Query 1968 TAATCTAGACGGTGAGGTAATTCAGACTGGATCATCTTCTTTGCTTACTGCCTTTGAGAA 2027
||||||||| | ||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1785 TAATCTAGAAGCTGA---AATTCAGACTGGATCATCTTCTTTGCTCACTGCCTCTGAGAA 1841
Query 2028 CCCTTTAACCGAAGAAATGACACAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGT 2087
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1842 CCCTTTAACCGATGAAATGACAAAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGT 1901
Query 2088 GGAATGGAAGTTGTTTGAGA--C--T-----GAAGAGCTCCAAATACAGACTGGATCATC 2138
|||| ||||||||||||||| | | |||||||||||| | || |||||| ||||
Sbjct 1902 GGAACGGAAGTTGTTTGAGATTCGCTACACTGAAGAGCTCCAATTGCAAACTGGACCATC 1961
Query 2139 TTCTATGTCCACTGTCTCTGAGAACCCCTTACCTTGTGAAATTACACCAACAAAAATGGT 2198
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1962 TTCTATGCCCACTGTCTCTGAGAACCCCTTACCATGTGAAATTACACCAACAAAAATGGT 2021
Query 2199 TATTGGTGAGGTTAGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2258
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2022 TATTGGTGAGGTTAGTCCACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2081
Query 2259 TAGCTCCACTGAAACATCTTCTTTGCCCATCGCCTTTGAAAACCCATTAACCAATGAACT 2318
| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2082 TTCCTCCACTGAAACATCTTCTTTGCCCATCGCCTTTGAAAACCCTTTAACCGACGAACT 2141
Query 2319 GACACAAGAACAAATGGTTATTGATGAGAATAGTCCATACGTTGAACCTGTAGATACTAA 2378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 2142 GACACAAGAACAAATGGTTATTGATGAGAATAGTCCATATGTTGAACCTGTAGATGCGAA 2201
Query 2379 AGGGAAGTTGTTTGAGAGTT-GCTCTGTT-GAA---TC-A-----T--CT---TC---GT 2419
|||||||| |||||| | || ||||| | ||| || | | || || ||
Sbjct 2202 AGGGAAGTCGTTTGATA-TTAGCTCTACTAGAAACCTCCAGACACTGACTGGATCATCGT 2260
Query 2420 --T-GCCCACTACCTCTGAGAACCCGTCAACATATGAAATGACAACAA-AACAAATGGTT 2475
| ||||||| |||||||||||| |||||| ||||| |||| ||| |||||||||||
Sbjct 2261 CATTGCCCACTGCCTCTGAGAACCTGTCAACCGATGAACCGACA-CAAGAACAAATGGTT 2319
Query 2476 GTTGATAAGGATAGTCCACATGTTGAACCAGAAGATGAGAAAGGGAAGTTGTTTGAAATT 2535
||||| || ||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2320 ATTGATGAGAATATTCCACATGTTGAACCTGAAGATGAGAAAGGGAAGTTGTTTGAGATT 2379
Query 2536 TGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGGC-AACA 2594
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2380 TGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAA-A 2438
Query 2595 AAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG-TACCT 2653
||| ||| |||| ||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 2439 AAATGAGTTGAAATTTGTTTGTTCAGTTAAGATTGAGATCCCAAGTATAGAAGGGTACCT 2498
Query 2654 TTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGCCGACC 2713
|| |||| || |||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 2499 TTTACATGAAGGGAGATGCAAAATCAACGAAAAAGGAAGCAGAAAACTCATCAGCCAACC 2558
Query 2714 ACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCTT-G-TCATAAC--GAA---TCTG 2766
|||||||||||||||||||||||||| |||||| | || | | | || ||| ||||
Sbjct 2559 ACATGATAAGAGCCTTGGAATCTTCTATAATGA-T-TTAGATGAGAAGAAGAAGAATCTG 2616
Query 2767 CAAATGCATGAAAATTTAGATGGGAAGAAGAAGAATCTGCA 2807
|||||||| |||| |||||||| || || |||||||||||
Sbjct 2617 CAAATGCAGGAAAGTTTAGATG--AA-AACAAGAATCTGCA 2654
Score = 566 bits (306), Expect = 4e-160
Identities = 527/628 (84%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 2199 TATTGGTGAGGTTAGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2258
||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 402 TATTGCTGAGGATAGTCCACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGTGAT 461
Query 2259 TAGCTCCACTG-AAA----C-A-T-----C-----T-TC-T-T-TGCCCATCGCCTTTGA 2297
| ||||||||| ||| | | | | | || | | || ||| ||||| |||
Sbjct 462 TTGCTCCACTGAAAATCTCCAATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCTGA 521
Query 2298 AAACCCATTAACCAATGAACTGACACAAGAACAAATGGTTATTGATGAGAATAGTCCATA 2357
||| | ||| || ||||| ||||||||||| |||||||| |||||||| |||||||| |
Sbjct 522 GAACTCTTTACCCGATGAAATGACACAAGAAGAAATGGTTTTTGATGAGGATAGTCCAGA 581
Query 2358 CGTTGAACCTGTAGATACT-AAAGGGAAGTTGTTTGAGAGTTGCTCT-GTTGAATCATCT 2415
|||||||||| |||| | ||| ||||||||||||||| ||||| | | ||| | ||
Sbjct 582 TGTTGAACCTGAAGAT-GTGAAACGGAAGTTGTTTGAGATTTGCTATACTAGAA--AGCT 638
Query 2416 TC-GTTGCCCACTA---CCTCTG-AGAACCCGTCAACATATGAAATGACAACAAAACAAA 2470
| | | |||| |||||| | ||||| | ||| ||||||||||| ||||||||||
Sbjct 639 CCAAATACAGACTAGTTCCTCTGCA-AACCCTTTAACCTATGAAATGACTACAAAACAAA 697
Query 2471 TGGTTGTTGATAAGGATAGTCCACATGTTGAA-CCAGAAGATGAGAAAGGGAAGTTGTTT 2529
||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| ||
Sbjct 698 TGGTTGTTGATAAGGATAGTCTACATGTTGAACCCA-CAGATGGGAGAGGGAAGTTGATT 756
Query 2530 GAAATTTGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGG 2589
|| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 757 GAGATTTGCACCAAAAATAAGTGGCCGAGGCCGATTTTCAGTGTTGAGGAAGAAAGAGGG 816
Query 2590 -CAACAAAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG 2648
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CCAA-AAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG 875
Query 2649 TACCTTTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGC 2708
| |||||||||| || |||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 876 TTCCTTTCACATGAAGGGAGATGCAAAATCAAAGAAAAAGCAAGCAGAAAACTCCTCAGC 935
Query 2709 CGACCACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCTTGTCATAACG-AATCTGC 2767
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 936 ATACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCTTGTCATAA-GTAATCTGC 994
Query 2768 AAATGCATGAAAATTTAGATGGGAAGAA 2795
|||||| |||| |||||||| ||||||
Sbjct 995 AAATGCCGGAAAGTTTAGATGAGAAGAA 1022
Score = 427 bits (231), Expect = 2e-118
Identities = 455/558 (82%), Gaps = 35/558 (6%)
Strand=Plus/Plus
Query 626 ATG-TGGACCTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTTGCTCCACTGAATTATTT 684
||| || ||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 2042 ATGTTGAACC-TGAAGATGTGAAAGGGAAGTCGTTTGAGATTTCCTCCACTGAAACATCT 2100
Query 685 TCTCTGTCCACT-G-TTTCTGAGAACTCTTTAACTGATGAAATGTCACAAGAAGAGGTGG 742
||| || ||| | | || ||| ||| ||||||| || ||| || |||||||| | |||
Sbjct 2101 TCTTTGCCCA-TCGCCTT-TGAAAACCCTTTAACCGACGAACTGACACAAGAACAAATGG 2158
Query 743 TTATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTGAG 801
||||||||||| ||||||| | |||||||||||| ||||| ||||||||||| ||||||
Sbjct 2159 TTATTGATGAGAATAGTCC-ATATGTTGAACCTGTAGATGCGAAAGGGAAGTCGTTTGAT 2217
Query 802 ATTTGCTATACGAGAAAGCTCCA-A-A-T-AC-AGA-C-T-G--GTT---C-CT--CT-G 844
||| ||| ||| ||||| ||||| | | | || || | | | || | || ||
Sbjct 2218 ATTAGCTCTACTAGAAACCTCCAGACACTGACTGGATCATCGTCATTGCCCACTGCCTCT 2277
Query 845 GA-AACCCT-TTAACCTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTC 901
|| || ||| | |||| ||||| ||| |||| ||||||||||| ||||| || ||| ||
Sbjct 2278 GAGAA-CCTGTCAACCGATGAACCGAC-ACAAGAACAAATGGTTATTGATGAGAATATTC 2335
Query 902 TACATGTGGAACCCGTAA-ATGGGAGAGGGGAGTTGATTGAGATTTGCACCAAAAATAAG 960
|||||| ||||| | || ||| || |||| ||||| ||||||||||| |||| ||||||
Sbjct 2336 CACATGTTGAACCTG-AAGATGAGAAAGGGAAGTTGTTTGAGATTTGCGCCAAGAATAAG 2394
Query 961 TGGCC-AAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGACCAAAAAATGAGCCCAAATT 1019
||||| || ||||||||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct 2395 TGGCCGAA-CCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAAAAAATGAGTTGAAATT 2453
Query 1020 TGTTTGTTCAGTAAAGATTGAGATACCAAATATAGAA-GGAACCTTTCACATGAAGGGAG 1078
|||||||||||| ||||||||||| |||| ||||||| || |||||| ||||||||||||
Sbjct 2454 TGTTTGTTCAGTTAAGATTGAGATCCCAAGTATAGAAGGGTACCTTTTACATGAAGGGAG 2513
Query 1079 ATATTAAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCTACCACATGATAAGAGCCT 1138
|| ||||||| ||||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 2514 ATGCAAAATCAACGAAAAAGGAAGCAGAAAACTCATCAGCCAACCACATGATAAGAGCCT 2573
Query 1139 TGGAATCTTCTCTAGTGA 1156
||||||||||| || |||
Sbjct 2574 TGGAATCTTCTATAATGA 2591
Score = 353 bits (191), Expect = 3e-96
Identities = 219/233 (94%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 7 TCAGTAGAAGCAGTAGAGAAGATCTTGAACTACAGTTTCGTGAACAAGACTCTTCTCAAG 66
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 7 TCAGTAGAAGCAGTAGAGAAGATCTTGAACTACAGTTTCACGAACAAGACTCTTCTCAAA 66
Query 67 GAAGCTATCACACAAAAATCTCCTTTATTCGACCGGCTTGAGTTCTTCGGCGACTCTATT 126
|| ||||| ||||||| |||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 67 GATGCTATAACACAAAGATCTACTTTATTCGACCGGCTTGAGTTCTTCGGTGACTCTGTT 126
Query 127 CTTGAGGTCGCCTTCACTAATTACATCTGCCACACTTACCCTAACCTCAAAGTCAAGGAG 186
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 127 CTTGAGGTCGCCTTCACTAATTACATCCGCCACACTTACCCTAACCTCAAAGTCAAGGAG 186
Query 187 TTGCGTGACTTGCGAACTGCAAATGTTAGTAACGAGAAGTTCGCTCGTATCGC 239
||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 187 TTGTGTGACTTGCGAACTGCTAATGTAAGTAACGAGAAGTTCGCTCGTGTCGC 239
Score = 213 bits (115), Expect = 6e-54
Identities = 154/172 (90%), Gaps = 5/172 (3%)
Strand=Plus/Plus
Query 1672 TTGGAGATCTTCAGG-GTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCA 1730
||| ||||||| ||| | ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 247 TTGCAGATCTTTAGGAG-TCTTTTGGAGCCAATATATACACCGGAGGATTTACGGATGCA 305
Query 1731 ACTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAATCGA 1790
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 306 ACCTAAACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATCGA 365
Query 1791 CTTCAGGTATTCGAAAGATGGTGGCAGCAGAAAAA-ATATTGCTCAGGTATA 1841
|||||||||||||||||||| | ||||| || || |||||||| ||| |||
Sbjct 366 CTTCAGGTATTCGAAAGATGACGACAGCA-AACAACATATTGCTGAGG-ATA 415
Score = 163 bits (88), Expect = 6e-39
Identities = 339/452 (75%), Gaps = 49/452 (11%)
Strand=Plus/Plus
Query 1986 AATT-CAGACTGGATCATCTTCTTTGCTTACTGCCTTTGAGAACCCTTTAACCGA--AGA 2042
|||| || |||||| |||||||| ||| |||| || ||||||||| || ||| | ||
Sbjct 1943 AATTGCAAACTGGACCATCTTCTATGCCCACTGTCTCTGAGAACCCCTT-ACC-ATGTGA 2000
Query 2043 AATGACA-CAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGTGGAA--TGGAAGTT 2099
||| ||| ||| || |||||||||| | ||||| ||||| | |||| ||| | |||| |
Sbjct 2001 AATTACACCAACAA-AAATGGTTATTGGTGAGGTTAGTCCACATGTTGAACCT-GAAGAT 2058
Query 2100 GTTTGAGACTGAAG-AGCTCCA-A-ATAC-AGACTGGATCATCTTCTATGTCCACT-GTC 2154
| ||| | |||| | | | | | | |||| | |||||||| || ||| | | |
Sbjct 2059 G--TGAAAGGGAAGTCGTTTGAGATTTCCTCCACTGAAACATCTTCTTTGCCCA-TCGCC 2115
Query 2155 TCTGAGAACCCCTT-ACCTTG-TGAAATTACACCAACAA-AAATGGTTATTGGTGAGGTT 2211
| ||| ||||| || ||| | ||| | ||| ||| || |||||||||||| |||| |
Sbjct 2116 TTTGAAAACCCTTTAACC--GACGAACTGACA-CAAGAACAAATGGTTATTGATGAGAAT 2172
Query 2212 AGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTAGCTC--C---- 2265
||||| ||||||||| || ||||| |||||||||||||||||| |||||||| |
Sbjct 2173 AGTCCATATGTTGAACCTGTAGATGCGAAAGGGAAGTCGTTTGATATTAGCTCTACTAGA 2232
Query 2266 -A-CT---GA-A---AC---ATC-T--TCTTTGCCCATC-GCCTTTGAAAACCCATTAAC 2309
| || || | || ||| | || ||||||| | |||| ||| |||| | |||
Sbjct 2233 AACCTCCAGACACTGACTGGATCATCGTCATTGCCCA-CTGCCTCTGAGAACCTGTCAAC 2291
Query 2310 CAATGAACTGACACAAGAACAAATGGTTATTGATGAGAATAGTCCATACGTTGAACCTGT 2369
| |||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 2292 CGATGAACCGACACAAGAACAAATGGTTATTGATGAGAATATTCCACATGTTGAACCTGA 2351
Query 2370 AGAT-ACTAAAGGGAAGTTGTTTGAGAGTTGC 2400
|||| | ||||||||||||||||||| ||||
Sbjct 2352 AGATGA-GAAAGGGAAGTTGTTTGAGATTTGC 2382
Score = 154 bits (83), Expect = 4e-36
Identities = 210/269 (78%), Gaps = 17/269 (6%)
Strand=Plus/Plus
Query 684 TTCTCTGTCCACTGTTTCTGAGAACTCTTTAAC-TGATGAAATGT-CA-CAAGAAGAGGT 740
|||| || ||||||| ||||||||| | ||| | || |||||| | || ||| || | |
Sbjct 1962 TTCTATGCCCACTGTCTCTGAGAACCCCTTACCATG-TGAAAT-TACACCAACAA-AAAT 2018
Query 741 GGTTATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTG 799
|||||||| ||||| |||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 2019 GGTTATTGGTGAGGTTAGTCC-ACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTG 2077
Query 800 AGATTTGCTATAC-GAGAA-AGCTCCAAATACAGACTGGTTCCTCTGGAAACCCTTTAAC 857
|||||| || || || || | || | | | | | | ||| || ||||||||||||
Sbjct 2078 AGATTTCCTCCACTGA-AACATCTTCTT-TGCCCA-TCG--CCTTTGAAAACCCTTTAAC 2132
Query 858 CTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTCTACATGTGGAACCCG 916
| | ||| |||| |||| ||||||||||| ||||| || |||||| | |||| ||||| |
Sbjct 2133 CGACGAACTGAC-ACAAGAACAAATGGTTATTGATGAGAATAGTCCATATGTTGAACCTG 2191
Query 917 TAAATGGGAGAGGGGAGTTGATTGAGATT 945
|| ||| || |||| ||| | |||| |||
Sbjct 2192 TAGATGCGAAAGGGAAGTCGTTTGATATT 2220
Score = 119 bits (64), Expect = 1e-25
Identities = 177/227 (78%), Gaps = 26/227 (11%)
Strand=Plus/Plus
Query 744 TATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTGAGA 802
||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 402 TATTGCTGAGGATAGTCC-ACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGTGA 460
Query 803 TTTGCTATAC-GAGAAAGCTCCAAATACAGACTGG-TT--C--CTCTG------G----- 845
|||||| || || ||| |||||| |||| |||| || | ||||| |
Sbjct 461 TTTGCTCCACTGA-AAATCTCCAATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCT 519
Query 846 -A-AACCCTTTAACCTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTCT 902
| ||| ||||| || |||||||||| |||| || |||||||| ||||| |||||||||
Sbjct 520 GAGAACTCTTTACCCGATGAAATGAC-ACAAGAAGAAATGGTTTTTGATGAGGATAGTCC 578
Query 903 ACATGTGGAACCCGTAA-ATGGGAGAGGGGAGTTGATTGAGATTTGC 948
| |||| ||||| | || ||| || | || ||||| |||||||||||
Sbjct 579 AGATGTTGAACCTG-AAGATGTGAAACGGAAGTTGTTTGAGATTTGC 624
> Ahg948527 jgi|Araly1|948527|scaffold_800414.1
Length=2402
Score = 520 bits (281), Expect = 3e-146
Identities = 751/965 (78%), Gaps = 84/965 (9%)
Strand=Plus/Plus
Query 941 AGATTTGCACCAAAAATAAGTGGCCAAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGAC 1000
|||||||| |||| |||||||||||| ||||||| ||| || ||||||||| ||| |
Sbjct 1132 AGATTTGCGCCAAGAATAAGTGGCCATTCCCGATTTACAGAATTGAGGAAGAAAGAGGGC 1191
Query 1001 CAAAAAATGAGCCCAAATTTGTTTGTTCAGTAAAGATTGAGATACCAAATATAGAAGGAA 1060
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 CAAAAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGGTT 1251
Query 1061 CCTTTCACATGAAGGGAGATATTAAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCT 1120
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 1252 CCTTTCACATGAAGGGAGATGCAAAACCAAAGAAAAAGGAAGCAGAAAACTCCTCAGCCT 1311
Query 1121 ACCACATGATAAGAGCCTTGGAATCTTCTCTAGTGAGTCTTGTCATAAGTAATTTACAAA 1180
|||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1312 ACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCTTGTCAT---TAATCCGCAAA 1368
Query 1181 AGCCGAAAAGTTT-AGATGAGAAGAATAATCCAT-TGCTCTTCAGCTCAGAGATGGATTC 1238
||||||| |||| |||||||||||| ||||||| | ||| |||||||||| ||||||||
Sbjct 1369 TGCCGAAA-GTTTTAGATGAGAAGAAGAATCCATCT-CTCGTCAGCTCAGAAATGGATTC 1426
Query 1239 T--T-CAGTGGAAGCAGTGGAGAAGATCTTGAATTACAGTTT-CGTGAACAAGACTCTTC 1294
| | ||||| |||||||||||||||||||||||||| |||| | ||||||| |||||
Sbjct 1427 TGATTCAGTGAAAGCAGTGGAGAAGATCTTGAATTAC-GTTTTCACAAACAAGAATCTTC 1485
Query 1295 TGAAAGAA-CTGCTTACACACAATAATTCACCTTTATTCCAGGGGCTTATGTTCGTTGGT 1353
|||||||| | ||| | | ||| | || || |||||||| ||||| |||||||||
Sbjct 1486 TGAAAGAAGC-GCT-A-AGGCAA-ACCTCTTCTCTATTCCAGAAGCTTAGGTTCGTTGGC 1541
Query 1354 -GAGTCGGCTCTT-TCTCTCGCCTTTACGAAACACTTATACCTCACTTACCCTA-TGCTC 1410
| | | ||||| | ||||||| | ||||| ||| | ||||||| || |||| | ||
Sbjct 1542 CGGG-CAGCTCTAGT-TCTCGCCATCACGAATCACATCTACCTCAGGTATCCTAATT-TC 1598
Query 1411 GAACCCAAGGATTTGTCTGTGTTGCGA-GATGCGAA-TACATGTCATGACAAATAT--G- 1465
||||||| ||| ||| || ||| | | || ||| ||||||| | |||||| | |
Sbjct 1599 GAACCCAGGGAGTTGGAACTGCTGCAACG-TG-GAAATACATGT-A--ACAAATCTTTGG 1653
Query 1466 CTTGTGTCGCCGTCAAA-A-AAGGCATTTACCAATCCTTTATAGGC-AGTGTCCCAAAGC 1522
|| | || ||||| ||| | || ||| |||||| |||||||||| | | || || |
Sbjct 1654 CTCGCGTTGCCGTGAAACATAAT--ATTCACCAATTCTTTATAGGCCAAT-TC--AA-GT 1707
Query 1523 CAGA-AAAAATGACT-ACAGATTTCAT-AGAGTTGATGGGCAAAGAAGATGATCCA-TAC 1578
| || ||||| || | | || ||| | |||| || |||||||||| ||||| ||| | |
Sbjct 1708 CGGAGAAAAA-GATTGA-AGCGTTC-TCAGAGGTGGTGGGCAAAGAGGATGACCCAGTTC 1764
Query 1579 ----AGA-GTT-G-T-G-A-A-AGCCCCCAAAAT-T-CTCGT-TAATCTTCTAGC-TGGT 1623
||| | | | | | | |||| | ||| | | ||| | | | ||| ||| | |
Sbjct 1765 CTTCAGATGGCCGATCGGAGAGAGCCAC-AAA-TGTACTC-TCTGACCTTTTAGAGTC-T 1820
Query 1624 GTAGCTGGAGCTGTTTATATTGATGTGAAATATAACGT-ACAACGACTCTTGGAGATCTT 1682
|||||||||||||||||||||||| |||| | | | || | || |||| | ||||| |||
Sbjct 1821 GTAGCTGGAGCTGTTTATATTGATATGAATTTTGATGTTAAAA-GACTGTGGGAGAGCTT 1879
Query 1683 CAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCAACTTAAACAACC 1742
||||| |||||| |||||| |||||||| |||||||||| ||| ||| || | |||||
Sbjct 1880 CAGGGGTCTTTTCGAGCCATTATATACATTGGATGATTTGCGGCTGCGACCT---CAACC 1936
Query 1743 ATTTCTTATGCTTT-TTCGTTTGGCTGATAAACACGGCAAGCAAATCGACTTCAGGTATT 1801
| ||| || |||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1937 AATTCGTACCCTTTCTT-GTTTGGGTGATAAAGACGGCAAGCGTTTCGACTTCAGGTATG 1995
Query 1802 CG-AAAGATGGTGGCAGCAGAAAAA-ATATTGCTCAG-GTATATATGGATGATATGTTTA 1858
| ||| | || | ||||| | | ||| |||| | |||||| | ||||||| ||| |
Sbjct 1996 AGGAAA-A-GG-G-CAGCA-ATAGGTATAAAGCTC-GCGTATATCTTGATGATAAGTTAA 2049
Query 1859 TAGCT 1863
|||||
Sbjct 2050 TAGCT 2054
Score = 351 bits (190), Expect = 1e-95
Identities = 258/289 (89%), Gaps = 11/289 (4%)
Strand=Plus/Plus
Query 2514 GAAAGGGAAGTTGTTTGAA-ATTTGCGCCAAGAATAAGTGGCCGA-ACCCGATTTTCAGT 2571
|||||||||||| | || ||||||||||||||||||||||| | |||||||| |||
Sbjct 1115 GAAAGGGAAGTTACAT-AAGATTTGCGCCAAGAATAAGTGGCC-ATTCCCGATTTACAGA 1172
Query 2572 GTTGAGGAAGAAAGAGGG-CAACAAAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGA 2630
||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 1173 ATTGAGGAAGAAAGAGGGCCAA-AAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGA 1231
Query 2631 GATACCAAATATAGAAGGTACCTTTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGA 2690
||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||
Sbjct 1232 GATACCAAATATAGAAGGTTCCTTTCACATGAAGGGAGATGCAAAACCAAAGAAAAAGGA 1291
Query 2691 AGCAGAAAACTCCTCAGCCGACCACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCT 2750
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1292 AGCAGAAAACTCCTCAGCCTACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCT 1351
Query 2751 TGTCATAACGAATCTGCAAATGCATGAAAATTT-AGATGGGAAGAAGAA 2798
|||||| | | || |||||||| |||| ||| ||||| |||||||||
Sbjct 1352 TGTCATTA--A-TCCGCAAATGCC-GAAAGTTTTAGATGAGAAGAAGAA 1396
Score = 322 bits (174), Expect = 9e-87
Identities = 362/450 (80%), Gaps = 24/450 (5%)
Strand=Plus/Plus
Query 1672 TTGGAGATCTTCAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCAA 1731
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 546 TTGCAGATCTTCAGGGGTCTTTTGGAGCCAATATATACACTTGATGATTTACGGATGCAA 605
Query 1732 CTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAATCGAC 1791
| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 606 CCTAAACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATTGAC 665
Query 1792 TTCAGGTATTCGAAAGATGGTGGCAGCAGAA-AAAATATTGCTCAGGTATATATGGATGA 1850
||||||||||||||||||| | ||| | || ||||||||||| |||| ||| | ||||
Sbjct 666 TTCAGGTATTCGAAAGATGATCACAGTA-AAGAAAATATTGCTGAGGTTTATCTTGATGG 724
Query 1851 TATGTTTATAGCTTCCGGTTGTGCTAAACGTATA-GATACCGCAAAGTTGCTTGCTGCTG 1909
||| ||||| || ||||| ||| ||||| || || | | ||||||| ||||||||||||
Sbjct 725 TATATTTATTGCCTCCGGGTGTACTAAAAGTTTAAG-TGTCGCAAAGGTGCTTGCTGCTG 783
Query 1910 AGGAAGCGATACAGAAGCTCTCAGAATGT-ATGCCCA--TCGAAAA-G--ATT---A--T 1958
|||||||| |||||||||| ||||||| | ||| | | ||||| | | | |
Sbjct 784 AGGAAGCGGTACAGAAGCTGTCAGAATATGATGTTGAAATTGAAAATGTGAAACGGAAGT 843
Query 1959 TCATCAAGATAAT-CTAGACGGTGAGG-TAA--TT-CAGACTG-GATCATCTTCTTTGCT 2012
| || |||| | || || | | | || | || || | |||| ||||||||
Sbjct 844 TGATTGAGATT-TGCTCCACTGAAAAACTCCGGTTACCGATTGAG-TCATTTTCTTTGCC 901
Query 2013 TACTGCCTTTGAGAACCCTTTAACCGAAGAAATGACACAAGAACAAATGGTTATCGATGA 2072
|||||||| |||||||||| ||||||| |||||||| ||||||||||||||||| |||||
Sbjct 902 TACTGCCTCTGAGAACCCTGTAACCGATGAAATGACGCAAGAACAAATGGTTATTGATGA 961
Query 2073 GGATAGTCTAGATGTGGAA-TGGAAGTTGT 2101
|||| ||| | |||| ||| | |||| |||
Sbjct 962 GGATTGTCCACATGTTGAACTTGAAGATGT 991
> Ahg906318 jgi|Araly1|906318|Al_scaffold_0003_3446
Length=2223
Score = 71.3 bits (38), Expect = 4e-11
Identities = 125/165 (76%), Gaps = 14/165 (8%)
Strand=Plus/Plus
Query 2609 TTGTTTGTTCAGTTAAGATTGAGA-TACCAAAT-ATAGAAGGTACCTT-TCACATAAAAG 2665
|||||| |||||||| |||||||| | |||| | | |||||||||||| | |||| | |
Sbjct 1961 TTGTTTCTTCAGTTACGATTGAGACT-CCAACTGA-AGAAGGTACCTTAT-ACATCGAGG 2017
Query 2666 GAGAT--GCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGCCGAC-CACATGATAA 2722
| ||| | |||| | |||| || |||||||| || | ||||| | ||| ||||||
Sbjct 2018 GTGATTTGGAAAA--AGGGAAAGAGAAAGCAGAATACAACGCAGCCT-CTCACGTGATAA 2074
Query 2723 GAGC-CTTGGAATCTTCTGTAATGAGTCTTGTCATAACGAATCTG 2766
|| | || | |||||||| | || |||||||| ||| |||||||
Sbjct 2075 GAACTCT-GAAATCTTCTCCATTGGGTCTTGTCGTAAGGAATCTG 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108481017760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5