BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45160.1
Length=2903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494463 jgi|Araly1|494463|fgenesh2_kg.8__279__AT5G45160.1 4283 0.0
Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988 394 2e-108
> Ahg494463 jgi|Araly1|494463|fgenesh2_kg.8__279__AT5G45160.1
Length=2782
Score = 4283 bits (2319), Expect = 0.0
Identities = 2552/2664 (96%), Gaps = 18/2664 (1%)
Strand=Plus/Plus
Query 117 GATCCG-TGGAAGTCGAATTTCGTGTAAAATAGAGATGGGGGAAAACGATGATGGTTGCT 175
|||||| | ||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 105 GATCCGTTCGAAGTCGAATTTCGT-T-AAATAGACATGGGGGAAAACGATGATGGTTGCT 162
Query 176 CGACTCAGCTAATCGATGGGAATGGTGAATTTAACGTTAAGGGTTTGGATAATTTCGTGA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CGACTCAGCTAATCGATGGGAATGGTGAATTTAACGTTAAGGGTTTGGATAATTTCGTGA 222
Query 236 AAAAGACGAAGCTTTCTGATTGTGGTCTTTCTTATGCTGTTGTTGCAATCATGGGTCCTC 295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAAGACCAAGCTTTCTGATTGTGGTCTTTCTTATGCTGTTGTTGCAATCATGGGTCCTC 282
Query 296 AAAGTAGTGGGAAGAGTACACTTTTGAATCATCTT-TTTAAAACCAGTTTTCGGGAAATG 354
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 283 AAAGTAGTGGGAAGAGTACACTTTTGAATCAT-TTGTTTAAAACCAGTTTTAGGGAAATG 341
Query 355 GATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGT 401
Query 415 ATTGAGCCTTTCACAATTGCTATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ATTGAGCCTTTCACAATTGCTATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAG 461
Query 475 GATGACACTACATTTGAGAAACAAAGTGCCCTGTTTGCTATAGCTGTTGCCGATATTGTA 534
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 462 GATGACACCACATTTGAGAGACAAAGTGCCCTGTTTGCTATCGCTGTTGCCGATATTGTA 521
Query 535 CTGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACAAACCATTGCTA 594
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 522 CTGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCGGCCAACAAACCATTACTA 581
Query 595 AAGACAGTTTTCCAGGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTT 654
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 582 AAGACAGTTTTCCAGGTCATGCTGCGGTTGTTTAGCCCTCGAAAAACAACTCTTCTTTTT 641
Query 655 GTCATACGTGATAAAACAAAGACTCCAATAGAGCTGCTTGAACGTGCTCTAAGAGAAGAT 714
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 642 GTCATACGTGATAAAACAAAGACTCCGATAGAGCTGCTTGAACGTGCTCTAAGAGAAGAT 701
Query 715 ATTCAGAAGATATGGGATTCAGTTCGCAAGCCTGAAGCACACAAAAATACACCTCTAAAT 774
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ATTCAGAAGATATGGGATTTAGTTCGCAAGCCTGAAGCACACAAAAATACACCTCTAAAT 761
Query 775 GAATTCTTCAATGTAATGATTGTTGCATTATCCAGCTATGAAGAGAAAGAAAAACAGTTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GAATTCTTCAATGTAATGATTGTTGCATTATCCAGCTATGAAGAGAAAGAAAAACAGTTT 821
Query 835 GAGCAAGAGGTTGCTGAGTTGAGGCAGAGGTTTTTCCATTCCATTTCACCTGGGGGACTT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGCAAGAGGTTGCTGAGTTGAGGCAGAGGTTTTTCCATTCCATTTCACCTGGGGGACTT 881
Query 895 GCTGGTGATAGACGTGGTGTAGTTCCTGCTTCAGGATTTTCTTTCAGCTCCCAGCAGATT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GCTGGTGATAGACGTGGTGTAGTTCCTGCTTCAGGATTTTCTTTCAGCTCCCAGCAGATT 941
Query 955 TGGAAAGTTATAAAAGAGAATAGAGATTTGGACCTTCCTGCTCACAAGGTAATGGTTGCC 1014
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 942 TGGAAAGTTATAAAAGAGAATAGAGACTTGGACCTTCCTGCTCACAAGGTAATGGTTGCC 1001
Query 1015 ACTGTTCGGTGTGAAGAGATAGCCAATGAGAAGCTGCGCGACTTGGCAACCAATGAGAGT 1074
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1002 ACTGTTCGGTGTGAAGAGATAGCCAATGAGAAGCTACGCGACTTGGCAACCAATGAGAGT 1061
Query 1075 TGGTTAGAGTTGCATGAAGCCGCT-GAAGGTGGTCTAGTTCCTGGTTTTGGCAAAAAGCT 1133
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1062 TGGTTGGAGTTGCATGAAGCCG-TAGAAGGTGGTCTAGTTCCTGGTTTTGGCAAAAAGCT 1120
Query 1134 TAGCTCTATCCTTGAAAAATACTTCTCAGAATATGACGCAGAGGCAATATACTTTGATGA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1121 TAGCTCTATCCTTGAAAAATACTTCTCAGAATATGACGCAGAGGCAATATACTTCGATGA 1180
Query 1194 AGGAGTAAGAAAAGAGAAGCGTCTACAGCTGAAACTTAATGCTTTGGATTTCGTATACCC 1253
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1181 AGGAGTAAGAAAAGAGAAGCGTCTACAGCTGAAACTTAAAGCTTTGGATTTCGTGCACAC 1240
Query 1254 TTCTTATGCTACCATGTTGGGACATCTACGGTCCAATGCACTGGAATCCTTTAAGATCCG 1313
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TGCTTATGCTACCATGCTGGGACATCTACGGTCCAATGCACTGGAATCCTTTAAGATCCA 1300
Query 1314 ACTGGAACAGTCCCTAAATCAAGGTGAAGGATTCGCAAAAGCTGTGCGAGACTCCCAACA 1373
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1301 ACTGGAACAGTCTCTAAATCAAGGAGAAGGATTCGCAAAAGCTGTGCGGGACTCCCAACA 1360
Query 1374 GTCTTGTCTGATGGTGTTTGACAAAGGATGTGAAGATGCTGCGGTTAAACAAGCAACTTG 1433
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1361 GTATTGTCTGATTGTGTTTGACAAAGGATGTGAAGATGCTAAGGTTAAACAAGCGACTTG 1420
Query 1434 GGATGCATCAAAAATCAGGGAGAAACTTTGTCGTGACATTGATGCTCACACATTTTTTGC 1493
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 1421 GGATGCATCAAAAATCAGAGAGAAACTTTGTCGTGACATTGATGCTCACACATCTTCTGC 1480
Query 1494 TAGGAGTGCTAAACTATCTGAATTAACTGCCAACTATGAGAAACGGCTAACTCAAGCACT 1553
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCGGACTGCTAAACTATCTGAATTAACTGCCAACTATGAGAAACGGCTAACTCAAGCACT 1540
Query 1554 TAGTGAACCTGTTGAGTCTTTGTTCGAAGCTGGTGGAAAAGAGACCTGGCCTTCCATAAG 1613
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1541 TAGTGAACCTGTTGAGTCTTTGTTCGAAGCTGGTGGAAAAGAGACGTGGCCTTCCATAAG 1600
Query 1614 GAAGCTTCTCAAACGCGAGACTGAAACAGCTGTTACAGATTTTCTGGATGTGGTTACTGG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GAAGCTTCTCAAACGCGAGACTGAAACAGCTGTTACAGATTTTCTGGATGTGGTTACTGG 1660
Query 1674 TTTTGAGCTAGATCACGCTAAAATTGATGCTATGGTTCAGAATCTAAAGAACTATTCTCA 1733
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1661 TTTTGAGCTAGATCACGATAAAATTGATGCTATGGTTCAGAATCTAAAGGACTATTCTCA 1720
Query 1734 GAGTTTAGTGGAGAAAAAAGCAAGAGAAGAAGCTGCTAAAATTTTAATCCGAATGAAAGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 GAGTTTAGTGGAGAAAAAAGCAAGAGAAGAAGCTGCTAAAATTTTAATCCGAATGAAAGA 1780
Query 1794 TAGGTTCTCAACAGTCTTCAGTCATGACAAAGACTCAATGCCACGGGTCTGGACTGGAAA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TAGGTTCTCAACAGTCTTCAGTCATGACAAAGACTCAATGCCACGGGTCTGGACTGGAAA 1840
Query 1854 AGAGGATATTAGAGCAATCACAAAAGATGCTCGAGCAGAGGCTTTAAGTCTTTTATCTGT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AGAGGATATTAGAGCAATCACAAAAGATGCTCGAGCAGAGGCTTTAAGTCTTTTATCTGT 1900
Query 1914 GATGACTGCAATACGTTTGGATGAAAGACCAGACAATATTGAGAGTACTCTTTTCTCTTC 1973
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1901 GATGGCTGCAATACGTTTGGATGAAAGACCCGACAATATTGAGAGTACTCTTTTCTCTTC 1960
Query 1974 TCTAATGGATGGAACTGTTTCTG-CTGCATCTTCCCACAACAGAAGCGTAGGAACGTCTA 2032
||| |||||||||||||| || | || |||||||||||||||||||| ||||||| || |
Sbjct 1961 TCTCATGGATGGAACTGTATCAGTCT-CATCTTCCCACAACAGAAGCTTAGGAACTTCCA 2019
Query 2033 CAGATCCACTTGCATCTAGCTCTTGGGAAGAGGTTCCTCCAAATAATATACTACTGACGC 2092
| |||||||||||||||||||| |||||||||||||||||||| || | |||||||||
Sbjct 2020 CGGATCCACTTGCATCTAGCTCATGGGAAGAGGTTCCTCCAAAAAACGTGTTACTGACGC 2079
Query 2093 CAGTGCAGTGTAAGTCACTGTGGAGACAGTTCAAATCTGAGACCGAGTATACTGTAACCC 2152
|||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct 2080 CAGTACAGTGTAAGTCACTGTGGAGACAGTTTAAATCTGAGACAGAGTATTCTGTAACCC 2139
Query 2153 AAGCTATTTCGGCACAGGAGGCTCACAAGCGAAATAACAACTGGCTTCCACCGGCTTGGG 2212
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2140 AAGCTATTTCGGCACAGGAGGCTCACAAGCGAAATAATAACTGGCTTCCACCGGCTTGGG 2199
Query 2213 CGATCGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAAGAATCCTT 2272
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 CAATTGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAAGAATCCTT 2259
Query 2273 TGTACCTTTTGGGTTTCTTCGTGGCGTTTTTACTCTCCAAAGCCTTATGGGTGCAGCTTG 2332
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 TGTACCTCTTGGGTTTCTTCGTGGCGTTTTTACTCTCCAAAGCCTTATGGGTGCAGCTTG 2319
Query 2333 ACATTCCGAGGGAATTTCAACATGGCGCAGTTGCTGGAGTACTGTCCATCACGTCGAAGT 2392
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 2320 ACATTCCGAGGGAATTTCAACACGGCGCAGTTGCTGGAGTACTCTCCATCACGTCAAAGT 2379
Query 2393 TTCTTCCAACTGTTATGAATCTTCTAAGAAAGCTTGCGGAAGAAGCGCAAGGAAAAACAA 2452
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TCCTTCCAACTGTTATGAATCTTCTAAGAAAGCTTGCGGAAGAAGCGCAAGGAAAAACAA 2439
Query 2453 CACAGGAAGTTCCAGACTTATCAGCTTCCCAAACCTATAGACAGCAATCTCCATCACACT 2512
| ||||||| | | ||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct 2440 CTCAGGAAGGTGAATACT---CAGCTTCCCAAAGCTACAGACAGCAATCTCCATCACACT 2496
Query 2513 CCATCTCAAGCACAATATCTGAATCTGTCGCATCAAACATATCATCTGCTGGTGATGATG 2572
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2497 CCATCTCAAGCACAATATCTGAATCTGTAGCATCAAACATATCAGCTGCTGGTGATGATG 2556
Query 2573 CAGAATACTCAAGCCCAAGCCCGGCCCTGGTTCGGAGACGAAACACCAACAATGTACAAG 2632
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2557 CAGAATACTCAAGCCCAAGCCCGGATCTGGTTCGGAGACGAAACACCAACAATGTACAAG 2616
Query 2633 AATCAGAAATCTCACAAATGTAAACCAACTAAAAGTGCAAGATCTACCGTAGAACAAGTC 2692
||||||| ||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2617 AATCAGAGATCTCTCAACTGTAAACCAACTAGAAGTGCAAGATTTACCGTAGAACAAGTC 2676
Query 2693 ATGTCAGTTCTGACAATGGTCTTCATA-AAAATCACACTGTAGTTCTATATATA--GGTA 2749
|||| ||||||||||| ||| || | |||||| ||| ||||| |||||||| ||||
Sbjct 2677 ATGTTGGTTCTGACAATCTTCTCCA-AGAAAATCGTACTATAGTTATATATATATAGGTA 2735
Query 2750 GTGTCTTGACTCAGAAA-CGAAAT 2772
||||||||||| |||| ||||||
Sbjct 2736 GTGTCTTGACTT-GAAAACGAAAT 2758
> Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988
Length=2223
Score = 394 bits (213), Expect = 2e-108
Identities = 616/801 (77%), Gaps = 65/801 (8%)
Strand=Plus/Plus
Query 286 ATGGGTCCTCAAAGTAGTGGGAAGAGTACACTT-TTGAATCATCTT-TTTAAAACCAGTT 343
|||||||||||||| ||||||||||||||| || ||||||||| || ||| ||| | |
Sbjct 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACA-TTATTGAATCAT-TTGTTTGGAACAAACT 58
Query 344 TTCGGGAAATGGATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTA 403
|| ||| |||||||| ||| ||||||| ||| || || |||||||| ||| | || |
Sbjct 59 TTATGGAGATGGATGCATTTAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAA 118
Query 404 GGTGTGTTGGTATTGAGCCTTTCACAATTGCT-ATGGATTTGGAGGGTACTGATGGGAGA 462
| |||| ||||| ||||||| ||| ||| | |||||||||||||| || ||||| |||
Sbjct 119 GATGTGCCGGTATAGAGCCTTGCACCCTTG-TAATGGATTTGGAGGGCACCGATGGAAGA 177
Query 463 GAAAGAGGCGAGGATGACACTACATTTGAGAAACAAAGTGCCCTGTTT-GCTATAGCTGT 521
|| |||| |||||||| || |||| || ||||| |||||||| ||| ||| | ||| |
Sbjct 178 GAGCGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCT-TTTCGCTCTTGCTAT 236
Query 522 -TGCCGATATTGTAC-TGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCTGCC 579
| | ||||| || | |||| ||||||||||| || || ||||| | ||||| |||||
Sbjct 237 CT-CGGATATCGT-CTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCT 294
Query 580 AACAAACCAT-TGC-T-AAAGACAGT-TTTCCAGGTCATGCTGCGATTGTTTAGCCCTCG 635
|| ||||| | | | | ||| || || ||| ||||| ||| ||||||||||||| || ||
Sbjct 295 AATAAACC-TCT-CTTGAAA-ACTGTCTTT-CAGGTTATGATGCGATTGTTTAGTCCACG 350
Query 636 TAAAACAACTCTTCTT-TTTGTCATACGTGATAAAACAAAGACTCCAATAG-AGCTGCTT 693
||||||||| | || ||||| ||||| |||||||| ||| || | | | | ||
Sbjct 351 TAAAACAAC-AATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAAT--TT 407
Query 694 -GA-AC-GTGCTCTAAGAGAAGATATTCAGAAGATATGGGATTCAGTTCGCAA-GCCTGA 749
|| | ||| | ||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 408 AGAGCCTGTG-T-TAAGAGAAGATATTCAGAAGATATGGGATTCTGTTC-CAAAGCCTGA 464
Query 750 AGCACACAAA-AATACACCTCTAAATGAATTCTTCAATGT--AATGATTGTTGCA-TTAT 805
||||||||| || || ||||||| || || |||||||| || | ||||||| || |
Sbjct 465 AGCACACAAGGAA-ACTCCTCTAAGCGACTTTTTCAATGTTGAA-G-TTGTTGCTCTT-T 520
Query 806 CCAGCTATGAAGAGAAAGAAAAACAGTTTGA-GCAAG-AGGTTGCTGAGTT-GAGGCAGA 862
|||| ||||| ||||| ||| |||| ||| | | | | |||||||| |||| ||| || |
Sbjct 521 CCAGTTATGAGGAGAAGGAAGAACAATTTAAAG-A-GCAGGTTGCT-AGTTTGAGACA-A 576
Query 863 -GGTTTTTCCATTCCATTTCACCTGGG-GGACTTGCTGGTGATAGACGTGGTGT-AGTTC 919
|||| | ||||| ||| |||| ||| || |||||||| || ||| | || || | |||
Sbjct 577 CGGTTCATGCATTCTATTGCACC-GGGTGGTCTTGCTGGAGACAGAAGAGGAGTGA-TTC 634
Query 920 CTGCTTCAGGATTTT-C-TTTCAGCTCCCAG--CAGATTTGGAAAGTTATAAAAGAGAAT 975
| || ||||| |||| | ||| || | | || || || |||| ||| || ||||| |||
Sbjct 635 CAGCCTCAGG-TTTTGCATTT-AG-TGC-AGATCAAATCTGGAGAGTCATCAAAGAAAAT 690
Query 976 AGAG-AT-TTGGACCTTCCTGCTCACAAGGTAATGGTTGCCACTGTTCGGTGTGAAGAGA 1033
| || || ||| ||||||| || |||||||| ||||| || ||||| ||||||||||| |
Sbjct 691 A-AGGATCTTG-ACCTTCCAGCCCACAAGGTCATGGTAGCTACTGTGCGGTGTGAAGAAA 748
Query 1034 TAGCCAATGAGAAGCT-GCGC 1053
| || ||||||||| | ||||
Sbjct 749 TTGCAAATGAGAAGTTTGCGC 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109585634865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5