BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45170.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494462 jgi|Araly1|494462|fgenesh2_kg.8__278__AT5G45170.1 2069 0.0
> Ahg494462 jgi|Araly1|494462|fgenesh2_kg.8__278__AT5G45170.1
Length=1316
Score = 2069 bits (1120), Expect = 0.0
Identities = 1251/1316 (95%), Gaps = 2/1316 (0%)
Strand=Plus/Plus
Query 55 AGCCATGGAAATCGCTTCTTGTTCAATTCTTAACAATCTTCAAATTTCTTGTACAAAGAC 114
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 2 AGCCATGGAAATCGCTTCTTGTTCGATTCTTGACAATCTTCAACTTTCTTGTACAAAGAC 61
Query 115 TTCTATTTTCACTCAGTATTTGAGCGAGCGTTCTTCACACGACACTGGAAGACGCAATTT 174
|||| |||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 62 TTCTCTTTTCACTCAATACTTGAGCGAGCGGTCTTCACACGACACTGGAAGATGCAATTT 121
Query 175 CTTGCCTTTTTCAAATTTCCCTGGAAAATCTCAGATTCTCGGAAAATGCTTGCGATTGCA 234
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTTGTCTTTTTCCAATTTCCCTGGAAAATCTCAGATTCTCGGAAAATGCTTGCGATTGCG 181
Query 235 GAGATTCTCTTCGATTTGCTTATCAGCTAGCAGAGAAGACGTAAACCCATCTGAAGAATT 294
||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |
Sbjct 182 GAGATTCTCTTCGATTTGCTTATCAGCGAGCCGAGAAGACGTAAACCCATCCGAAGAACT 241
Query 295 CGCTGTGATACTTGAGGTTGATAGGGTTATGATTGATACATGGTCAAGTAATCGCCAAGC 354
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 CGCTGTGATACTTGAAGTTGATGGGGTTATGATTGATACATGGTCAAGTAATCGCCAAGC 301
Query 355 GTTCAATGTAGCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTA 414
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 302 GTTCAATGTAGCTTTTCAAAAGATTGGGCTTGACTGTGCAAATTGGCCTGAACCAGTTTA 361
Query 415 TTCAGACTTGTTGAGAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAA 474
||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TTCCGACCTGTTGAGAAAGGGTGCGGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAA 421
Query 475 CCAGATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGAGTGT 534
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 422 CCAAATTGGCTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAAAGTGT 481
Query 535 ATTGCGAGAAAAGAAAAATGCAATGGATGAGTTTCTCATATCGAAAAGCTTACCTCTGAG 594
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 482 ATTGCGAGAAAAGAAAAATGCAATGGATGAGTTTTTGATGTCGAAAAGCTTACCTCTGAG 541
Query 595 ATCTGGAGTGCAAGAATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGT 654
||||||||| ||||| |||||||||||||||||| |||||| ||| || |||||||||||
Sbjct 542 ATCTGGAGTCCAAGAGTTTATCGATAATGCATACACGGAGAGAGTGCCTGTTGCTATCGT 601
Query 655 AACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTATCCATTGTCGAGATGCTTGGGCA 714
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 602 AACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTATCCGTAGTCGAGATGCTTGGCCA 661
Query 715 AGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGG 774
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 AGAAAGTCTTCCAAATGTGAAGGTTATCGGAGACAGTGAGGTAGAACAGAGTATGTATGG 721
Query 775 ACAACTTGTTCTTGGGAAAGGAGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGT 834
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACAACTTGTTTTTGGTAAAGGAGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGT 781
Query 835 aaaaaaaGCAGCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAA 894
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 CAAAAAAGCAGCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCGATGCTAAA 841
Query 895 GCTTAGTGTTGATATTGACACAACCTCATCTGAGAGATTGGAAAAGATTGTTGTTGCATT 954
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCTAAGTGTTGATATTGACACAACCTCATCTGAGAGATTGGAAAAGATTGTTGTTGCATT 901
Query 955 GCGTGCTGCTGCGGAACACATAGGATTACCTGTAAATAACTGTGTACTTGTTGCTGGTAG 1014
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 902 GCGTGCTGCTGCGGAACACATAGGAGTACCTGTAAAAAACTGTGTACTTGTTGCTGGTAG 961
Query 1015 TCAACCTGGAGTTTCTGCTGCAAAGATGATAGGCATGCCGTGTGTAGTCATGCGAAGCAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TCAACCTGGAGTTTCTGCTGCAAAGATGATAGGCATGCCGTGTGTAGTCATGCGAAGCAG 1021
Query 1075 TTTAACGGCAAGAGGTGAGTTTCCATCGGCCAAAGGTGTAATGGATGGGTTTGGAGGTGC 1134
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1022 TTTAACAGCAAGAGGTGAGTTTCCATCGGCAAAAGGTGTAATGGATGGGTTTGGAGGTGC 1081
Query 1135 AGACCTAACAATCCCAAAACTTAGGAACAAGATCAAGTCTTGAAGAAACAATTCAAGAAA 1194
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1082 AGACCTAACAATCCCAAAACTTAGGCACAAGATTGAGTCTTGAAGAAACAATTCAAGAAA 1141
Query 1195 GTTGTCTAAAAATCAGAATCTGGAAATACTGTCGAGTTATT-GTTCACTTCTCGAAGTTC 1253
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1142 GTTGTCTAAAAATCAGAATCTGGAAATACTGTCGAGTTATTTGCTCACTTCTTGAAGTTT 1201
Query 1254 TTGTGAAGTTTTCGACTTGATATATATTAACTATAGCTACGTGTTGTACAACTTGATTCT 1313
||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 1202 TTGTGAAGTTTTCGACTTGATATATGT-AACTATAGCTACATGTTGTACAACTTGATTCT 1260
Query 1314 TTGTAATGAATTGGTGTGGTTAATTTTCAGACATCAACAAACCTTTACTCAATACT 1369
|| ||||||| ||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1261 TTATAATGAACTGGTGTGGTTAGTTTTCAAACATCAGCAAACCTTTACTCAATACT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5