BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45210.1 Length=2094 Score E Sequences producing significant alignments: (Bits) Value Ahg887745 jgi|Araly1|887745|Al_scaffold_0378_2 898 0.0 Ahg915611 jgi|Araly1|915611|Al_scaffold_0008_362 870 0.0 Ahg323710 jgi|Araly1|323710|fgenesh1_pm.C_scaffold_5001254 89.8 8e-17 > Ahg887745 jgi|Araly1|887745|Al_scaffold_0378_2 Length=1494 Score = 898 bits (486), Expect = 0.0 Identities = 1058/1322 (80%), Gaps = 88/1322 (7%) Strand=Plus/Plus Query 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852 ||||| || ||||||| |||||||||||||||||||||| || ||||| | | |||||| Sbjct 160 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 216 Query 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908 ||||| |||||| |||| | | || | ||| | |||| |||||||| |||||||| | Sbjct 217 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATAATCATAACATCCCG 275 Query 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGATGTA-TT-CGAAG-TTCCGAG-TC 964 |||||||||||||||||||||||| ||||| || | ||| || || || | ||| | | Sbjct 276 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGA-TA-GTATTTACG-AGATACCG-GCTT 331 Query 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGCG-TTCCATAAAGAAGGGCC 1022 | ||| ||||| || ||| |||||||||| | ||| ||| || || ||| ||| || Sbjct 332 TAAAC-AGGAAGGAGGCTCAACGGTTATTCACACGGTTTGCGTTTTCAGAAA-AAGAACC 389 Query 1023 AAGTGAT-GCTAAATTAATG--GACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAA 1078 ||||||| | | || | || || || ||||||||||| | | || |||||| ||| | Sbjct 390 AAGTGATAG-T-AA-TCGTGTAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTAATGGGA 445 Query 1079 ATCC-TAAGGCTCTATGCT-TCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGA 1136 |||| | | ||||| || | ||||||| |||||||||| | ||| ||||| |||||||| Sbjct 446 ATCCTTTA-GCTCTCTG-TCTCTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGA 500 Query 1137 AATGGAGGAGGAGTTTGAGAAGATGAGGCAATGTcccccccAAGA-AATACT-CAGTTTA 1194 ||||| || || || |||| ||| | ||||||||| || || || | || | || | | Sbjct 501 AATGGTGGCCGAATTCGAGATGATTAAGCAATGTCCTCCACAGGAGATTA-TGCA-TGTG 558 Query 1195 TTC-AGAAGCAGCTATGATGCACTTAACGACA-ATGAGAGAAGTATATTCTTGGACATTG 1252 ||| || ||||| ||||||| || | || | ||||||| || |||||||| ||||||| Sbjct 559 TTCAAG-AGCAGTTATGATGTGCTCAGTGA-AGATGAGAGGAGCATATTCTTAGACATTG 616 Query 1253 CGTGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGG 1310 | ||||||||||| |||| |||| | || |||| || || ||||||||||||||||| Sbjct 617 CTTGTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATTCGTATACTTGAAGGGTGTGG 674 Query 1311 GTTCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAA 1369 ||||| ||||||||||| ||||| | ||| | | || |||||| || ||| ||| || | Sbjct 675 TTTCTTCCCACACGTTGGTATTGAACATCTCG-TAGAACGGTCTTTATTGATGATATCGA 733 Query 1370 AGGAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATC 1425 | ||| || || ||| ||||||||| |||| ||||| |||| ||| || |||| || || Sbjct 734 A-GAACAACAA-AGTTGAGATGCAA-TTTTTGATTCAGGATGTTGCTCG-GAATATCGTC 789 Query 1426 AA-CCAG------A-C--TTCG--AGGCGTCGCAGACACTGGGAACCATCAAGAATCAGA 1473 || || | | ||| |||| ||||||| ||||| || ||||| || | | Sbjct 790 AATGAAGAAAAAAATCAAATCGCAAGGCATCGCAGATTGTGGGAGCCTTCAAGCATTAAA 849 Query 1474 TTATTACTAGAAA-ATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGA 1532 | ||| ||| ||| | ||||| ||||||| | ||||||||||||||| |||||||| || Sbjct 850 TCATTTCTA-AAAGAAAATAAACCTAAGGGCACTGAAGTTATTGAAGGAATTTTTCTAGA 908 Query 1533 CACAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAG 1592 ||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 909 CACAACAAACTTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAG 968 Query 1593 ACTGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTTCG-TCTTACTAAG- 1650 ||||||||||||||| ||| || |||| |||| |||||||||| ||| |||| | ||| Sbjct 969 ACTGTTGAAGATCTACAGTTCAAACTCTGAAAGTGCTCAAGAA-TTCCATCTTCCCAAGA 1027 Query 1651 GAACTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAA 1710 || || ||||||||||||||||||||||||||||| |||||||| ||||||||||||| | Sbjct 1028 GA-CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCACTGGGAAAAGTATCCGTTGCGA 1086 Query 1711 TCGTTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCA 1769 ||||||||| |||| ||||| | || | |||||||||||||||||||||||||||||||| Sbjct 1087 TCGTTGCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCA 1145 Query 1770 GCTTCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTA 1828 |||||| || |||||| | ||||| ||||| || | || || ||||| |||||||||| Sbjct 1146 GCTTCAGAA-TCTCTGGGAAGGAACCAAGAGTCTGGTGAAGTTGAAGATAATAAATCTTA 1204 Query 1829 GCCACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAA 1888 |||| |||||||||||| |||||||||| | ||| |||||| |||| | ||||| ||| Sbjct 1205 GCCATTCTCAGAAACTAGTTGAAGTTGATGTACTTATGAAAGCTTGTAGTATTGAGCAAA 1264 Query 1889 TAGATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATC 1948 |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| Sbjct 1265 TAGATCTTCAAGGTTGTACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAAAGAATC 1324 Query 1949 TTCAATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AA 2006 ||||| |||| ||||| |||||||||||||| | ||||||||| ||| | || || || Sbjct 1325 TTCAACTTCTAAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA 1383 Query 2007 GATAAAAGGAAT-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGT 2065 |||||| || | || || ||||||| ||||||||||||| | ||||||||||||||||| Sbjct 1384 -ATAAAAAGACTTGA-TCCAGAAGGCGGCTTAAGAGAAACAAAATTTGAATCAATGGTGT 1441 Query 2066 TC 2067 || Sbjct 1442 TC 1443 > Ahg915611 jgi|Araly1|915611|Al_scaffold_0008_362 Length=2136 Score = 870 bits (471), Expect = 0.0 Identities = 1051/1320 (80%), Gaps = 84/1320 (6%) Strand=Plus/Plus Query 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852 ||||| || ||||||| |||||||||||||||||||||| || ||||| | | |||||| Sbjct 802 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 858 Query 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908 ||||| |||||| |||| | | || | ||| | |||| |||| ||| || ||||| | Sbjct 859 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATGATCATATCATCCCG 917 Query 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGA-TGTATT-CGAAG-TTCCGAG-TC 964 |||||||||||||||||||||||| ||||| || | ||| || || || | ||| | | Sbjct 918 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGA-TAGTGT-TTACG-AGATACCG-GCTT 973 Query 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGC-GTTCCATAAAGAAGGGCC 1022 | ||| | ||| || ||| |||||||||| ||||| || || || ||| ||| || Sbjct 974 TAAAC-AAGAAGGAGGCTCAACGGTTATTCACCCGGTTTGCATTTTCAGAAA-AAGAACC 1031 Query 1023 AAGTGATGCTAAAT-TAATGGACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAAAT 1080 ||||||| || ||| | || || || ||||||||||| | | || ||||||| ||||||| Sbjct 1032 AAGTGATACT-AATCTTATAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTGATGGAAAT 1089 Query 1081 CC-TAAGGCTCTATGCT-TCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGAAA 1138 || | | ||||| || | |||||| |||||||||| | ||| ||||| ||||||||| Sbjct 1090 CCTTTA-GCTCTCTG-TCACTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGAAG 1144 Query 1139 TGGAGGAGGAGTTTGAGAAGATGAGGCAATGTcccccccAAGA-AATACT-CA-GTTTAT 1195 ||| || ||| || |||||||| | ||||| ||| || | || | || | || || | | Sbjct 1145 TGGTGGCGGAATTCGAGAAGATTAAGCAATCTCCTCCGCGGGAGATTA-TGCATGTGT-T 1202 Query 1196 TCAGAAGCAGCTATGATGCA-CTTAACGACAATGAGAGAAGTATATTCTTGGACATTGCG 1254 | || ||||||||||||| | || | ||| |||||||| || |||||||| |||||||| Sbjct 1203 TAAG-AGCAGCTATGATG-AGCTCAGCGAAAATGAGAGGAGCATATTCTTAGACATTGCT 1260 Query 1255 TGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGGGT 1312 | ||||||||| |||| |||| | || |||| ||||| ||||||||||||||||| | Sbjct 1261 TTTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATGCGTATACTTGAAGGGTGTGGTT 1318 Query 1313 TCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAAAG 1371 |||| ||||||||||| ||||||||||||| | || |||||| || ||| ||| ||||| Sbjct 1319 TCTTCCCACACGTTGGTATTGACCGTCTTG-TAGAACGGTCTTTATTGATGATATCAAA- 1376 Query 1372 GAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATCAA 1427 ||| || || || ||||||||| |||| ||||| ||| ||| || |||| || |||| Sbjct 1377 GAACAACAA-TGTTGAGATGCAA-ATTTTGATTCAGGATATTGCTCG-GAATATCGTCAA 1433 Query 1428 -CCAG------A-C---T-TCGAGGCGTCGCAGACACTGGGAACCATCAAGAATCAGATT 1475 || | | | | |||| ||||||| ||||| || |||| || | || Sbjct 1434 TGAAGAAAAAAATCAAATCACAAGGCATCGCAGATTGTGGGATCCTTCAATCATTAAATC 1493 Query 1476 ATTACTAGAA-AATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGACA 1534 ||| |||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| Sbjct 1494 ATTTCTAGAAGAA-AATAAACCTAAGGGGACTGAAGTTATTGAAGGAATTTTTCTAGACA 1552 Query 1535 CAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGAC 1594 |||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1553 CAACAAAATTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAGAC 1612 Query 1595 TGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTT-CGTCTTACTAAGGAA 1653 | ||||||||||| ||| || |||| |||| | |||||||| || | |||| | |||| | Sbjct 1613 TATTGAAGATCTACAGTTCAAACTCTGAAAGTACTCAAGAA-TTCCATCTTCCCAAGGGA 1671 Query 1654 CTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAATCG 1713 || ||||||||||||||||||||||||||||| || ||||| ||||||||||||| |||| Sbjct 1672 CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCATTGGGAAAAGTATCCGTTGCGATCG 1731 Query 1714 TTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCAGCT 1772 || ||| |||| ||||| | || | |||||||||||||||||||||||||||||||| || Sbjct 1732 TTTCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCATCT 1790 Query 1773 TCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTAGCC 1831 ||| || |||||| | ||||| ||||| | | || || ||||| ||||||||||||| Sbjct 1791 TCAGAA-TCTCTGGGAAGGAACCAAGAGTTTGGTGAAGTTGAAGATAATAAATCTTAGCC 1849 Query 1832 ACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAATAG 1891 | |||||| ||||| |||||||||| | ||| |||||| |||| ||||||| |||| Sbjct 1850 ATTCTCAGCAACTAGTTGAAGTTGATGTACTTTTGAAAGCTTGTAGTCTTGAGCAAATCC 1909 Query 1892 ATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATCTTC 1951 ||||||||||||| ||||||||| ||||||||||||||| |||| |||| ||||||||| Sbjct 1910 ATCTTCAAGGTTGCACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAGAGAATCTTC 1969 Query 1952 AATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AAGAT 2009 || |||||||||| |||||||||||||| | ||||||||| ||| | || || || || Sbjct 1970 AACTTCTGAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA-AT 2027 Query 2010 AAAAGGAA-T-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGTTC 2067 |||| || | || || ||||||| | ||||||||||| | |||||||||| |||||||| Sbjct 2028 AAAAA-AACTTGA-TCCAGAAGGCGGGTTAAGAGAAACAAAATTTGAATCATTGGTGTTC 2085 > Ahg323710 jgi|Araly1|323710|fgenesh1_pm.C_scaffold_5001254 Length=3756 Score = 89.8 bits (48), Expect = 8e-17 Identities = 134/174 (77%), Gaps = 12/174 (7%) Strand=Plus/Plus Query 1437 GAGGCG-TCGCAGACACTGGGAACCATCAAGAA-TCAG-ATTATTACTAGAAAATGATA- 1492 |||||| || ||||| ||| |||| ||||||| | || ||| || |||||| || | | Sbjct 1407 GAGGCGTTC-CAGACTGTGGAAACCTTCAAGAATTAAGTATT-TT-CTAGAAGAT-ACAC 1462 Query 1493 AA-TCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGACACAACAAAATTAACCTTT 1551 || | | ||| | |||| |||||||| || | ||| ||| || | |||| |||| Sbjct 1463 AAGT-TTTGGGTAGCGAAGATATTGAAGCCATATATCTGGACCCATCTGCCTTAAGCTTT 1521 Query 1552 GATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGACTGT-TGAAGAT 1604 ||||| |||||| ||||||||||||||||||||||||||||| | | ||||||| Sbjct 1522 GATGTCAATCCTCTGGCGTTTGAGAATATGTATAATCTTAGA-TATCTGAAGAT 1574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78770626660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5