BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45210.1
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887745 jgi|Araly1|887745|Al_scaffold_0378_2 898 0.0
Ahg915611 jgi|Araly1|915611|Al_scaffold_0008_362 870 0.0
Ahg323710 jgi|Araly1|323710|fgenesh1_pm.C_scaffold_5001254 89.8 8e-17
> Ahg887745 jgi|Araly1|887745|Al_scaffold_0378_2
Length=1494
Score = 898 bits (486), Expect = 0.0
Identities = 1058/1322 (80%), Gaps = 88/1322 (7%)
Strand=Plus/Plus
Query 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852
||||| || ||||||| |||||||||||||||||||||| || ||||| | | ||||||
Sbjct 160 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 216
Query 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908
||||| |||||| |||| | | || | ||| | |||| |||||||| |||||||| |
Sbjct 217 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATAATCATAACATCCCG 275
Query 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGATGTA-TT-CGAAG-TTCCGAG-TC 964
|||||||||||||||||||||||| ||||| || | ||| || || || | ||| | |
Sbjct 276 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGA-TA-GTATTTACG-AGATACCG-GCTT 331
Query 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGCG-TTCCATAAAGAAGGGCC 1022
| ||| ||||| || ||| |||||||||| | ||| ||| || || ||| ||| ||
Sbjct 332 TAAAC-AGGAAGGAGGCTCAACGGTTATTCACACGGTTTGCGTTTTCAGAAA-AAGAACC 389
Query 1023 AAGTGAT-GCTAAATTAATG--GACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAA 1078
||||||| | | || | || || || ||||||||||| | | || |||||| ||| |
Sbjct 390 AAGTGATAG-T-AA-TCGTGTAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTAATGGGA 445
Query 1079 ATCC-TAAGGCTCTATGCT-TCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGA 1136
|||| | | ||||| || | ||||||| |||||||||| | ||| ||||| ||||||||
Sbjct 446 ATCCTTTA-GCTCTCTG-TCTCTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGA 500
Query 1137 AATGGAGGAGGAGTTTGAGAAGATGAGGCAATGTcccccccAAGA-AATACT-CAGTTTA 1194
||||| || || || |||| ||| | ||||||||| || || || | || | || | |
Sbjct 501 AATGGTGGCCGAATTCGAGATGATTAAGCAATGTCCTCCACAGGAGATTA-TGCA-TGTG 558
Query 1195 TTC-AGAAGCAGCTATGATGCACTTAACGACA-ATGAGAGAAGTATATTCTTGGACATTG 1252
||| || ||||| ||||||| || | || | ||||||| || |||||||| |||||||
Sbjct 559 TTCAAG-AGCAGTTATGATGTGCTCAGTGA-AGATGAGAGGAGCATATTCTTAGACATTG 616
Query 1253 CGTGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGG 1310
| ||||||||||| |||| |||| | || |||| || || |||||||||||||||||
Sbjct 617 CTTGTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATTCGTATACTTGAAGGGTGTGG 674
Query 1311 GTTCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAA 1369
||||| ||||||||||| ||||| | ||| | | || |||||| || ||| ||| || |
Sbjct 675 TTTCTTCCCACACGTTGGTATTGAACATCTCG-TAGAACGGTCTTTATTGATGATATCGA 733
Query 1370 AGGAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATC 1425
| ||| || || ||| ||||||||| |||| ||||| |||| ||| || |||| || ||
Sbjct 734 A-GAACAACAA-AGTTGAGATGCAA-TTTTTGATTCAGGATGTTGCTCG-GAATATCGTC 789
Query 1426 AA-CCAG------A-C--TTCG--AGGCGTCGCAGACACTGGGAACCATCAAGAATCAGA 1473
|| || | | ||| |||| ||||||| ||||| || ||||| || | |
Sbjct 790 AATGAAGAAAAAAATCAAATCGCAAGGCATCGCAGATTGTGGGAGCCTTCAAGCATTAAA 849
Query 1474 TTATTACTAGAAA-ATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGA 1532
| ||| ||| ||| | ||||| ||||||| | ||||||||||||||| |||||||| ||
Sbjct 850 TCATTTCTA-AAAGAAAATAAACCTAAGGGCACTGAAGTTATTGAAGGAATTTTTCTAGA 908
Query 1533 CACAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAG 1592
||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 909 CACAACAAACTTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAG 968
Query 1593 ACTGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTTCG-TCTTACTAAG- 1650
||||||||||||||| ||| || |||| |||| |||||||||| ||| |||| | |||
Sbjct 969 ACTGTTGAAGATCTACAGTTCAAACTCTGAAAGTGCTCAAGAA-TTCCATCTTCCCAAGA 1027
Query 1651 GAACTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAA 1710
|| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1028 GA-CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCACTGGGAAAAGTATCCGTTGCGA 1086
Query 1711 TCGTTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCA 1769
||||||||| |||| ||||| | || | ||||||||||||||||||||||||||||||||
Sbjct 1087 TCGTTGCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCA 1145
Query 1770 GCTTCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTA 1828
|||||| || |||||| | ||||| ||||| || | || || ||||| ||||||||||
Sbjct 1146 GCTTCAGAA-TCTCTGGGAAGGAACCAAGAGTCTGGTGAAGTTGAAGATAATAAATCTTA 1204
Query 1829 GCCACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAA 1888
|||| |||||||||||| |||||||||| | ||| |||||| |||| | ||||| |||
Sbjct 1205 GCCATTCTCAGAAACTAGTTGAAGTTGATGTACTTATGAAAGCTTGTAGTATTGAGCAAA 1264
Query 1889 TAGATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATC 1948
|||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1265 TAGATCTTCAAGGTTGTACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAAAGAATC 1324
Query 1949 TTCAATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AA 2006
||||| |||| ||||| |||||||||||||| | ||||||||| ||| | || || ||
Sbjct 1325 TTCAACTTCTAAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA 1383
Query 2007 GATAAAAGGAAT-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGT 2065
|||||| || | || || ||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1384 -ATAAAAAGACTTGA-TCCAGAAGGCGGCTTAAGAGAAACAAAATTTGAATCAATGGTGT 1441
Query 2066 TC 2067
||
Sbjct 1442 TC 1443
> Ahg915611 jgi|Araly1|915611|Al_scaffold_0008_362
Length=2136
Score = 870 bits (471), Expect = 0.0
Identities = 1051/1320 (80%), Gaps = 84/1320 (6%)
Strand=Plus/Plus
Query 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852
||||| || ||||||| |||||||||||||||||||||| || ||||| | | ||||||
Sbjct 802 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 858
Query 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908
||||| |||||| |||| | | || | ||| | |||| |||| ||| || ||||| |
Sbjct 859 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATGATCATATCATCCCG 917
Query 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGA-TGTATT-CGAAG-TTCCGAG-TC 964
|||||||||||||||||||||||| ||||| || | ||| || || || | ||| | |
Sbjct 918 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGA-TAGTGT-TTACG-AGATACCG-GCTT 973
Query 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGC-GTTCCATAAAGAAGGGCC 1022
| ||| | ||| || ||| |||||||||| ||||| || || || ||| ||| ||
Sbjct 974 TAAAC-AAGAAGGAGGCTCAACGGTTATTCACCCGGTTTGCATTTTCAGAAA-AAGAACC 1031
Query 1023 AAGTGATGCTAAAT-TAATGGACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAAAT 1080
||||||| || ||| | || || || ||||||||||| | | || ||||||| |||||||
Sbjct 1032 AAGTGATACT-AATCTTATAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTGATGGAAAT 1089
Query 1081 CC-TAAGGCTCTATGCT-TCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGAAA 1138
|| | | ||||| || | |||||| |||||||||| | ||| ||||| |||||||||
Sbjct 1090 CCTTTA-GCTCTCTG-TCACTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGAAG 1144
Query 1139 TGGAGGAGGAGTTTGAGAAGATGAGGCAATGTcccccccAAGA-AATACT-CA-GTTTAT 1195
||| || ||| || |||||||| | ||||| ||| || | || | || | || || | |
Sbjct 1145 TGGTGGCGGAATTCGAGAAGATTAAGCAATCTCCTCCGCGGGAGATTA-TGCATGTGT-T 1202
Query 1196 TCAGAAGCAGCTATGATGCA-CTTAACGACAATGAGAGAAGTATATTCTTGGACATTGCG 1254
| || ||||||||||||| | || | ||| |||||||| || |||||||| ||||||||
Sbjct 1203 TAAG-AGCAGCTATGATG-AGCTCAGCGAAAATGAGAGGAGCATATTCTTAGACATTGCT 1260
Query 1255 TGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGGGT 1312
| ||||||||| |||| |||| | || |||| ||||| ||||||||||||||||| |
Sbjct 1261 TTTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATGCGTATACTTGAAGGGTGTGGTT 1318
Query 1313 TCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAAAG 1371
|||| ||||||||||| ||||||||||||| | || |||||| || ||| ||| |||||
Sbjct 1319 TCTTCCCACACGTTGGTATTGACCGTCTTG-TAGAACGGTCTTTATTGATGATATCAAA- 1376
Query 1372 GAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATCAA 1427
||| || || || ||||||||| |||| ||||| ||| ||| || |||| || ||||
Sbjct 1377 GAACAACAA-TGTTGAGATGCAA-ATTTTGATTCAGGATATTGCTCG-GAATATCGTCAA 1433
Query 1428 -CCAG------A-C---T-TCGAGGCGTCGCAGACACTGGGAACCATCAAGAATCAGATT 1475
|| | | | | |||| ||||||| ||||| || |||| || | ||
Sbjct 1434 TGAAGAAAAAAATCAAATCACAAGGCATCGCAGATTGTGGGATCCTTCAATCATTAAATC 1493
Query 1476 ATTACTAGAA-AATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGACA 1534
||| |||||| || ||||| ||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1494 ATTTCTAGAAGAA-AATAAACCTAAGGGGACTGAAGTTATTGAAGGAATTTTTCTAGACA 1552
Query 1535 CAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGAC 1594
|||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1553 CAACAAAATTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAGAC 1612
Query 1595 TGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTT-CGTCTTACTAAGGAA 1653
| ||||||||||| ||| || |||| |||| | |||||||| || | |||| | |||| |
Sbjct 1613 TATTGAAGATCTACAGTTCAAACTCTGAAAGTACTCAAGAA-TTCCATCTTCCCAAGGGA 1671
Query 1654 CTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAATCG 1713
|| ||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct 1672 CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCATTGGGAAAAGTATCCGTTGCGATCG 1731
Query 1714 TTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCAGCT 1772
|| ||| |||| ||||| | || | |||||||||||||||||||||||||||||||| ||
Sbjct 1732 TTTCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCATCT 1790
Query 1773 TCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTAGCC 1831
||| || |||||| | ||||| ||||| | | || || ||||| |||||||||||||
Sbjct 1791 TCAGAA-TCTCTGGGAAGGAACCAAGAGTTTGGTGAAGTTGAAGATAATAAATCTTAGCC 1849
Query 1832 ACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAATAG 1891
| |||||| ||||| |||||||||| | ||| |||||| |||| ||||||| ||||
Sbjct 1850 ATTCTCAGCAACTAGTTGAAGTTGATGTACTTTTGAAAGCTTGTAGTCTTGAGCAAATCC 1909
Query 1892 ATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATCTTC 1951
||||||||||||| ||||||||| ||||||||||||||| |||| |||| |||||||||
Sbjct 1910 ATCTTCAAGGTTGCACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAGAGAATCTTC 1969
Query 1952 AATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AAGAT 2009
|| |||||||||| |||||||||||||| | ||||||||| ||| | || || || ||
Sbjct 1970 AACTTCTGAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA-AT 2027
Query 2010 AAAAGGAA-T-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGTTC 2067
|||| || | || || ||||||| | ||||||||||| | |||||||||| ||||||||
Sbjct 2028 AAAAA-AACTTGA-TCCAGAAGGCGGGTTAAGAGAAACAAAATTTGAATCATTGGTGTTC 2085
> Ahg323710 jgi|Araly1|323710|fgenesh1_pm.C_scaffold_5001254
Length=3756
Score = 89.8 bits (48), Expect = 8e-17
Identities = 134/174 (77%), Gaps = 12/174 (7%)
Strand=Plus/Plus
Query 1437 GAGGCG-TCGCAGACACTGGGAACCATCAAGAA-TCAG-ATTATTACTAGAAAATGATA- 1492
|||||| || ||||| ||| |||| ||||||| | || ||| || |||||| || | |
Sbjct 1407 GAGGCGTTC-CAGACTGTGGAAACCTTCAAGAATTAAGTATT-TT-CTAGAAGAT-ACAC 1462
Query 1493 AA-TCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGACACAACAAAATTAACCTTT 1551
|| | | ||| | |||| |||||||| || | ||| ||| || | |||| ||||
Sbjct 1463 AAGT-TTTGGGTAGCGAAGATATTGAAGCCATATATCTGGACCCATCTGCCTTAAGCTTT 1521
Query 1552 GATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGACTGT-TGAAGAT 1604
||||| |||||| ||||||||||||||||||||||||||||| | | |||||||
Sbjct 1522 GATGTCAATCCTCTGGCGTTTGAGAATATGTATAATCTTAGA-TATCTGAAGAT 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78770626660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5