BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45220.1
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948510 jgi|Araly1|948510|scaffold_800397.1 821 0.0
Ahg915616 jgi|Araly1|915616|Al_scaffold_0008_367 296 3e-79
> Ahg948510 jgi|Araly1|948510|scaffold_800397.1
Length=1528
Score = 821 bits (444), Expect = 0.0
Identities = 885/1087 (81%), Gaps = 73/1087 (7%)
Strand=Plus/Plus
Query 198 AATCGTTCTGGTTATCTTCAC-CAGCAGGTACACAGAATCAAAATGGTGCTTGATGA-AG 255
||||| ||||| ||||||| | || | ||||| |||||| |||||||||||| || ||
Sbjct 221 AATCGCTCTGGCTATCTTCTCTGAG-AATTACACCGAATCAGAATGGTGCTTGA-GAGAG 278
Query 256 CT-G-GTAGACATCAATAAATGTGCGGA-GAAAGACCATCTGGTGGCTATTCCGATCTTC 312
|| | | | | ||||| | |||| ||| ||| | | || ||||||||||| |||| |
Sbjct 279 CTAGCG-A-AGATCAAGGATTGTGTGGATCAAAAAAGA-CTCGTGGCTATTCCCATCTAC 335
Query 313 TAC-AAGTTGGATCCCTCCACCGTCAGAGGCCTGAGCGG-ACAGTTCGGTGATGCATTCA 370
||| ||| |||||| | | |||| | | | ||| ||| | |||| |||||||||||||
Sbjct 336 TACAAAG-TGGATCGATACTCCGTGAAATACTTGA-CGGAAAAGTTTGGTGATGCATTCA 393
Query 371 GGGATCTGAGAGAAAGTACTGGAT-TAATG--GAAA-AGTGGAAGGAAGCTTTGAAGTCG 426
|||| ||| | ||| | | ||| | | | |||| ||||||| ||||| || ||||
Sbjct 394 GGGAGCTG-G-CCAAGGA-T-GATCTGAGGAAGAAAGAGTGGAAACAAGCTCTGCAGTCA 449
Query 427 ATT-TCCGACAG-ACCGGGTATCA--G-GG-TG-GATAAG-AGC-AG-CCCCAAGGC-CA 475
||| | | |||| | ||| | ||| | || | || ||| | | || | || | ||
Sbjct 450 ATTGT-CAACAGAATCGGCT-TCATGGTGGACGAGAAAAGCAACGAGAACGAAATTCTCA 507
Query 476 A-GAGAATCG-AAATAGTTGTGAAGAAGGTGTTGAGCAGAATTCCATCGGAGGGAAGCCA 533
| || ||||| || | || ||| ||| ||| ||||||||||||||||||||||||
Sbjct 508 ACGA-AATCGTCAA-GGCGGTTAAGTTTGTGCTGAACAGAATTCCATCGGAGGGAAGCCA 565
Query 534 TAACGCTTCTGTAGATCCATTAGAAAATAGTGACACTCGACTAACTTCCTC--G-GGCGA 590
|| |||| || ||||||| |||||||| ||||||| | ||||||||| | |||||
Sbjct 566 AAAGGCTTATGCGGATCCATCAGAAAATAACGACACTC-A--AACTTCCTCAGGAGGCGA 622
Query 591 AGAA-AATAGGACTTTTGGAATCAAAGAAAGACTGAAAGAATTTAAAGACAAGTTGGATC 649
| || ||| |||||||||||||||| ||||||||| ||||| ||||| |||||||| |
Sbjct 623 A-AAGGATAAGACTTTTGGAATCAAACAAAGACTGAGTGAATTGAAAGAGAAGTTGGAAC 681
Query 650 TCAATAAAATGAGAAGTCAGCTAGGAATGGTAATAGGTTGTCTTTTGGTTCTCTTTTTTG 709
|||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 682 TCAATAAACTTAGAAGTCAGCTAGGAATTATAATAGGTTGTCTTTTGCTTCTCTTTTTTG 741
Query 710 TTCTGAAACAAAGTGCTTATACGAGCACACGTTTAATAGGTGAGGGCGGTGCCATCGGTG 769
||||| |||||| |||||||| ||||||||||||||| ||||||||| | | ||
Sbjct 742 TTCTGCAACAAATTGCTTATATGAGCACACGTTTAATTGGTGAGGGC---G---T---TG 792
Query 770 CCATCAGTGCCATCGATAGAATTGCGGACAATGTACCAAAAATACGGGAGTACGTTCCTG 829
||||| | | | |||||||||| ||| ||| |||||| | ||||||| ||||||
Sbjct 793 CCATC---G--A-C---AGAATTGCGGTGAATTTACAAAAAATGCCGGAGTACATTCCTG 843
Query 830 AAGAGGGAACAGAGAAACCAAGAGACACATATACTGAATTTCATACTGGTAAATATGGAA 889
||| ||||||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||
Sbjct 844 CAGATGGAACAGAGAATCCAAGAGACACATATACTGAAATTCGTACTGATAAATAT-GAA 902
Query 890 -CAAAGCCCGAGAGATCTTCTTCTGACGTTAAAACAAATGCCGATCTCCTTGATAGAACT 948
||||||| |||||||||||||||| || || | ||||||||| ||||||| ||||||
Sbjct 903 GCAAAGCCTGAGAGATCTTCTTCTGCCGCTAGATTGAATGCCGATTTCCTTGACAGAACT 962
Query 949 TTCACTGACACGCGAATGGACGGTAAAGTCAAGCCACCGAAAT-TTCAAGTTTTCATCAA 1007
||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 963 TTCACCAACTCGCGAATGGACGGTAAATTCAAGCCACCG-AATATTCAAGTTTTCATCAA 1021
Query 1008 TTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGCTATCTCGTTG-ATGCACTTCGAA 1066
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
Sbjct 1022 TTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGATATCTC-AGGCATGCACTTCGGA 1080
Query 1067 GAAGTGAGATCAACGTTTTCATAGATAATCAGGAGCAAAGAGGTGAAGACCTCAACACTC 1126
||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1081 TTAGTAAGATCAACGTGTTCATAGACAATGAGGAGCAAAGAGGTGAAGACCTCAACACTC 1140
Query 1127 TTTTCAAGAGGATCGAAGATTCT-GGTATTGCCATAGTTGTGTTTTCGAGTAGGTACACA 1185
||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1141 TTTTCAAGAGGATCGAAGAATCTCAG-ATTGCCATAGTTGTGTTTTCGAGTAGGTACACA 1199
Query 1186 GAATCAAAATGGTGCTTGGAAGAGCTTGTGAAGATTAAAGAACGTGTGCACCAAGGCCTT 1245
|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 1200 GAATCAAAATGGTGCTTGGATGAGCTTGTTAAGATTAAAGAACGTGTGGACCAAGGCCTT 1259
Query 1246 CTCAAGG 1252
|||||||
Sbjct 1260 CTCAAGG 1266
Score = 200 bits (108), Expect = 3e-50
Identities = 124/132 (94%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1300 AAGGGAGAGTTTGGTGACCATTTCAGAGATAAAGAGTACATGTACGAGTCTGATGAGCCT 1359
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| || |||
Sbjct 1263 AAGGGAGAGTTTGGTGACCATTTCAGAGATATAGAATACATGTACAAGTCTGACGAACCT 1322
Query 1360 ATGATAAAGCGATGGAAAGAGGCGATCGTGTTTATCTCCCATAGGTTTGCCCTGACTTTG 1419
|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1323 ATGATAAAGCAATGGAAAGAGGCGATCGTGTTTGTCTCCCATAAGTTTGCCCTGACTTTG 1382
Query 1420 GATGAAAAAAGT 1431
||||||||||||
Sbjct 1383 GATGAAAAAAGT 1394
Score = 180 bits (97), Expect = 3e-44
Identities = 105/109 (96%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1533 ATTGGAGATTGATTTTGTTGAAACTATCGTCAAGGAGGTCTTGAAAATTCTACAAGCCAT 1592
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1400 ATTGGAGATTGATTTCGTTGAAACTATCGTCAAGGAGGTCTTGAAAATGCTACAAGCCAT 1459
Query 1593 ATGCAAAGTGGAAAGTAGCCAATCCTCTTTTTGTGCGGAGAAAGCCTGA 1641
|||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1460 ATGCAAAGTGGAAAGTGGCCAATCCTCTTTTTGTGTGGAGAAAGCCTGA 1508
> Ahg915616 jgi|Araly1|915616|Al_scaffold_0008_367
Length=606
Score = 296 bits (160), Expect = 3e-79
Identities = 206/228 (90%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 943 AGAACTTTCACTGACACGCGAATGGACGGTAAAGTCAAGCCACC--GAAAT-TTCAAGTT 999
||||||||||| | |||||||| ||||| |||| |||||||| ||||| | ||||||
Sbjct 22 AGAACTTTCACCAAGTCGCGAATGCACGGTGAAGTTAAGCCACCGAGAAATATCCAAGTT 81
Query 1000 TTCATCAATTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGCTATCTCGTTGATGCA 1059
|||||||||||||||||||||||||||| | ||||||||||| ||||||| || ||||||
Sbjct 82 TTCATCAATTTCCGCGGAGATCAGTTGCACTACAATTTCGTCAGCTATCTTGTGGATGCA 141
Query 1060 CTTCGAAGAAGTGAGATCAACGTTTTCATAGATAATCAGGAGCAAAGAGGTGAAGACCTC 1119
||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 142 CTTCGGAGAAGTGAGATCAACGTGTTCATAGACAATGAGGAGCAAAGAGGTGAAGACCTC 201
Query 1120 AACACTCTTTTCAAGAGGATCGAAGATTCTGGTATTGCCATAGTTGTG 1167
|||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 202 AACACTCTTTTCAAGAGGATCGAAGAATCTGGGATTGCCATAGTTGTG 249
Score = 268 bits (145), Expect = 7e-71
Identities = 171/184 (93%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 1248 CAAGGTGCTTCCCATCTTCTATAAGGTGACTCCAACCAATGTGAAAAGACCTAAGGGAGA 1307
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 309 CAAGGTGCTTCCTATCTTCTACAAGGTGACTCCAACCAATGTGAAAAGACTTAAGGGAGA 368
Query 1308 GTTTGGTGACCATTTCAGAGATAAAGAGTACATGTACGAGTCTGATGAGCCTATGATAAA 1367
|||||||||||||||||||||||| || ||||||||| ||||||| || |||||||||||
Sbjct 369 GTTTGGTGACCATTTCAGAGATAAGGAATACATGTACAAGTCTGACGAACCTATGATAAA 428
Query 1368 GCGATGGAAAGAGGCGATCGTGTTTATCTCCCATAGGTTTGCCCTGACTTTGGATGAAAA 1427
|| |||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||
Sbjct 429 GCAATGGAAAGAGGCGATCGTGTCTGTCTCCCATAAGTTTGCCCTGGCTTTGGATGAAAA 488
Query 1428 AAGT 1431
||||
Sbjct 489 AAGT 492
Score = 163 bits (88), Expect = 3e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1533 ATTGGAGATTGATTTTGTTGAAACTATCGTCAAGGAGGTCTTGAAAATTCTACAAGCCAT 1592
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 498 ATTGGAGATTGATTTCGTTGAAACTATCGTCAAGGAGGTCTTGAAAATGCTACAAGCCAT 557
Query 1593 ATGCAAAGTGGAAAGTAGCCAATCCTCTTTTTGTGCGGAGAAAGCCTGA 1641
||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 558 ATGCAAAGTGGAAAGCGGGCAATCCTCTTTTTGTATGGAGAAAGCCTGA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5