BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45240.1
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948499 jgi|Araly1|948499|scaffold_800386.1 701 0.0
Ahg948501 jgi|Araly1|948501|scaffold_800388.1 370 3e-101
Ahg948493 jgi|Araly1|948493|scaffold_800380.1 359 6e-98
Ahg948480 jgi|Araly1|948480|scaffold_800367.1 252 1e-65
Ahg915590 jgi|Araly1|915590|Al_scaffold_0008_341 207 2e-52
Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346 65.8 1e-09
> Ahg948499 jgi|Araly1|948499|scaffold_800386.1
Length=1664
Score = 701 bits (379), Expect = 0.0
Identities = 568/658 (86%), Gaps = 18/658 (3%)
Strand=Plus/Plus
Query 343 CGCATGTTTGCGAAAATAGCAGAACTAAAAGGCCATGAGTATGATGAAGAATTAAGCGAA 402
|||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 145 CGCACGCTTGCGAAAATAGCAGAACTAAAAGGCCATGAGTATGATGAGGAATTCAGCGAA 204
Query 403 GAATCCGAATTTGTGGAAGAGATCGT-GGAAG-A-TGTGTATGAGCTACTTAATCCTACG 459
||||||||| ||||||| |||||| | ||||| | | | | |||| ||||||| ||||||
Sbjct 205 GAATCCGAAGTTGTGGAGGAGATC-TCGGAAGCAATAT-T-TGAGATACTTAACCCTACG 261
Query 460 GAAGAGATTAGGATCCACAGCCGGCAACTGGATATACAAAACTTGTTATGCAAGCAACAA 519
||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 262 GAAGAGATTGGGATCCACAGCCGGCAATTGGATATAGAAAACTTGCTATGCAAGCAACCA 321
Query 520 TGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACACTTGCT 579
||||||||||||||| |||||||||| || |||||||||||||||||||| | ||| |||
Sbjct 322 TGGGGCCTTCGCACTATAGGCATTTTCGGCAAGCCTGGCATTGGCAAGACTATACTGGCT 381
Query 580 AGAGCGGTCTTTCG-CAGAATGGTTGGAGGCTATGATGCTTCTCACTTTGTCAAGGATTT 638
||||| |||||||| | |||||| |||||| ||||||||| || |||| ||||| |||||
Sbjct 382 AGAGCAGTCTTTCGAC-GAATGGGTGGAGGGTATGATGCTACTTACTTCGTCAAAGATTT 440
Query 639 CCACACACGATATAGTGAGATGACACTTGAGCCTTTGCCT-GCTCATTTCTTGTGTATGA 697
||||||| | ||||||||| | |||||| |||||||| | | ||||||| ||| |||
Sbjct 441 CCACACAAAACATAGTGAGAAAAGACTTGAACCTTTGCCCAG-TGATTTCTTTTGTCTGA 499
Query 698 CTC-AAGTCGAAGAGTTTGACCTAAACAATTCTGGCTCCGAGCAATGCCATCGCCAAAAA 756
||| || | |||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||
Sbjct 500 CTCCAA-TGGAAGAGTTTGACCTTAACAACTCTGGTTCCGAGCCATGCCATCGCCGAAAA 558
Query 757 AGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGATGTCTTTTCTTGG 815
|||||| ||| |||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 559 AGGGTTCTTG-TTGTTCTAGATGATGTACAAAATGCTCAAGACGCTATGTCTTTTCTTGG 617
Query 816 AGAAATTGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAAGAGATAGA-CAAG 874
| |||||||||||| |||||||||||||||||||||||||||||||||| | || |
Sbjct 618 ACCGGTTGATCAGTTTGCACCAGGGAGCTTGATCATCATAACCTCAAGAGATAAATCA-G 676
Query 875 TACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAAATGGTGAAGATG 934
| |||||| ||||||| | || ||||||||||||||||| ||||||| || ||||||||
Sbjct 677 TTCTTGAGCAGTGCCAGATGAATGAGATTTATGAGCTTAAAGGTCTAAGTGATGAAGATG 736
Query 935 CTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAAAG-ATGTGATAGTGAAGAATCTTC 991
|| ||||||||| || || |||||||||||||| | | ||||||| | |||||||||
Sbjct 737 CTCTGAAGCTATTGACAAGATGTGCCTTTGGGAATGGA-GTGATAGAGCAGAATCTTC 793
> Ahg948501 jgi|Araly1|948501|scaffold_800388.1
Length=1813
Score = 370 bits (200), Expect = 3e-101
Identities = 479/609 (79%), Gaps = 37/609 (6%)
Strand=Plus/Plus
Query 403 GAATCCGAATTTGTGGAAGAGATCGTGGAA-GATGTGTATGAGCTACT-TAATCCTACGG 460
||||| |||||| | ||||| |||| || ||||||| ||||| ||| | |||| ||||
Sbjct 465 GAATCTGAATTTCTAGAAGAAATCG-CCAATGATGTGTTTGAGCAACTCT-ATCCAACGG 522
Query 461 AAGAGATTAGGATCCACAG-C-CGGC-AACTG-GATA-TACAAAACTTGT-TATGCAAGC 514
|||||||| |||| | ||| | | | || | |||| || ||||| | | ||||||| |
Sbjct 523 AAGAGATTGGGAT-C-CAGTCACTACTAAAGGAGATAGTAGAAAAC-TATCTATGCAATC 579
Query 515 AACAATGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACAC 574
||| ||||||| |||||||| |||||||||| ||| |||||||||| || |||||||| |
Sbjct 580 AACCATGGGGCATTCGCACTATAGGCATTTTTGGTGAGCCTGGCATCGGAAAGACAACTC 639
Query 575 TTGCTAGAGCGGTCTTTCGCAGAATGGTT-GGA-GGCTATGATGCTTCTCACTTT-GTCA 631
| |||| ||| |||||||| |||| || | |||||||||| |||| ||| |||
Sbjct 640 TGGCTACAGCCTTCTTTCGCCGAAT--TTCTCATGGCTATGATGATTCT-TGTTTCATCA 696
Query 632 AGGATTTCCACACACG-ATATAGTGAGATGACACTTGAGCCTTTGCCTGCTCATTTCTTG 690
| ||||| |||| | | ||||| ||||| || ||||||| ||||||| || | | ||||
Sbjct 697 AAGATTTTCACA-AAGAATATACTGAGAAGAGACTTGAGTATTTGCCTCCTAAATACTTG 755
Query 691 TGTATGAC-TCAAGTCGAAGAGTTTGACCTAAACAA-TTCTGGCTC-CGAG-CAATGCCA 746
||| || |||| | ||| ||||||||||||| || || || || | || ||| ||||
Sbjct 756 GGTAAAACTTCAA-TGGAAAAGTTTGACCTAAA-AAGTTTTGATTCAC-AGCCAA-GCCA 811
Query 747 TCGCCAA-AAAAGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGATG 804
|| ||| || ||||| ||| ||| |||||| ||||| | ||||| |||||||||| |
Sbjct 812 CCG-CAAGAAGTGGGTTCTTG-TTGCTCTAGACGATGTGCAAAATGCTCAAGACGCGAAG 869
Query 805 TCTTTTCTTGGAGAAAT-TGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAAG 863
|| |||||||| | || |||| ||||||||||||||||||||||||||||||| || ||
Sbjct 870 TCATTTCTTGGTG-GATGTGATAAGTTTGGTCCAGGGAGCTTGATCATCATAACTTCCAG 928
Query 864 AGATAGACAAGTACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAAA 923
| | ||| || | |||||| |||||||| | || ||||||||||||| || ||||||||
Sbjct 929 AAAGAGAAAAATTCTTGAGCAGTGCCATATGAATAAGATTTATGAGCTAAAAGGTCTAAA 988
Query 924 TGGTGAAGATGCTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAAAG-ATGTGATAGTGA 982
|| |||||||||| |||||| || ||||| |||||||||||||| | | ||||||| |
Sbjct 989 TGATGAAGATGCTCTGAAGCTGTTTACGAGATGTGCCTTTGGGAATGGA-GTGATAGAGC 1047
Query 983 AGAATCTTC 991
|||||||||
Sbjct 1048 AGAATCTTC 1056
> Ahg948493 jgi|Araly1|948493|scaffold_800380.1
Length=1436
Score = 359 bits (194), Expect = 6e-98
Identities = 477/609 (78%), Gaps = 37/609 (6%)
Strand=Plus/Plus
Query 403 GAATCCGAATTTGTGGAAGAGATCGTGGA-AGATGTGTATGAGCTACT-TAATCCTACGG 460
||||| |||||| | ||||| |||| | ||||||| ||||| ||| | |||| || |
Sbjct 81 GAATCTGAATTTCTAGAAGAAATCG-CCAGGGATGTGTTTGAGCAACTCT-ATCCAACAG 138
Query 461 AAGAGATTAGGATCCACAG-C-CGGC-AACTG-GATA-TACAAAACTTGT-TATGCAAGC 514
|||||||| |||| | ||| | | | || | |||| || ||||| | | ||||||| |
Sbjct 139 AAGAGATTGGGAT-C-CAGTCACTACTAAAGGAGATAGTAGAAAAC-TATCTATGCAATC 195
Query 515 AACAATGGGGCCTTCGCACTCTAGGCATTTTAGGTAAGCCTGGCATTGGCAAGACAACAC 574
||| ||||||| |||||||| |||||||||| ||| |||||||||| || |||||||| |
Sbjct 196 AACCATGGGGCATTCGCACTATAGGCATTTTTGGTGAGCCTGGCATCGGAAAGACAACTC 255
Query 575 TTGCTAGAGCGGTCTTTCGCAGAATGGTT-GGA-GGCTATGATGCTTCTCACTTT-GTCA 631
| |||| ||| |||||||| |||| || | |||||||||| |||| ||| |||
Sbjct 256 TGGCTACAGCCTTCTTTCGCCGAAT--TTCTCATGGCTATGATGATTCT-TGTTTCATCA 312
Query 632 AGGATTTCCACACACG-ATATAGTGAGATGACACTTGAGCCTTTGCCTGCTCATTTCTTG 690
| ||||| |||| | | ||||| ||||| || ||||||| ||||||| || | | ||||
Sbjct 313 AAGATTTTCACA-AAGAATATACTGAGAAGAGACTTGAGTATTTGCCTCCTAAATACTTG 371
Query 691 TGTATGAC-TCAAGTCGAAGAGTTTGACCTAAACAA-TTCTGGCTC-CGAG-CAATGCCA 746
||| || |||| | ||| ||||||||||||| || || || || | || ||| ||||
Sbjct 372 GGTAAAACTTCAA-TGGAAAAGTTTGACCTAAA-AAGTTTTGATTCAC-AGCCAA-GCCA 427
Query 747 TCGCCAA-AAAAGGGTT-TTGATTGTTCTAGATGATGTACGAAATGAGCAAGACGCGATG 804
|| ||| || ||||| ||| ||| |||||| ||||| | ||||| |||||||||| |
Sbjct 428 CCG-CAAGAAGTGGGTTCTTG-TTGCTCTAGACGATGTGCAAAATGCTCAAGACGCGAAG 485
Query 805 TCTTTTCTTGG-AGAAATTGATCAGTTTGGTCCAGGGAGCTTGATCATCATAACCTCAAG 863
|| |||||||| || | |||| ||||||||||||||||||||||||||||||| || ||
Sbjct 486 TCATTTCTTGGTGGATA-TGATAAGTTTGGTCCAGGGAGCTTGATCATCATAACTTCCAG 544
Query 864 AGATAGACAAGTACTTGAGAAGTGCCATCTCAACGAGATTTATGAGCTTAACGGTCTAAA 923
| | ||| || | |||||| |||||||| | || ||||||||||||| || ||||||||
Sbjct 545 AAAGAGAAAAATTCTTGAGCAGTGCCATATGAATAAGATTTATGAGCTAAAAGGTCTAAA 604
Query 924 TGGTGAAGATGCTAGGAAGCTATTCACGAGGTGTGCCTTTGGGAA-AGATGTGATAGTGA 982
|| |||||||||| ||||| || ||||| |||||||||||||| ||| ||||||| |
Sbjct 605 TGATGAAGATGCTCTAAAGCTGTTTACGAGATGTGCCTTTGGGAACAGA-GTGATAGAGC 663
Query 983 AGAATCTTC 991
|||||||||
Sbjct 664 AGAATCTTC 672
> Ahg948480 jgi|Araly1|948480|scaffold_800367.1
Length=328
Score = 252 bits (136), Expect = 1e-65
Identities = 211/243 (87%), Gaps = 22/243 (9%)
Strand=Plus/Plus
Query 2212 GTCAATGATCCTCCAGCTGAGTTGAGCTATGGCGATGTGCAGTTTGAGTTTTTATGCCTT 2271
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 87 GTCAATGGTCCTCCAGCTGAGTTGAACTATGGCGATGTGCAGTTTGAGTTTTTATGCCTT 146
Query 2272 GACCACAGGAAGGAAATAATAAAGATAAAAGAATGCGGCATACAACTCATGGAGGTTT-- 2329
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 147 GACCACAGGAAGGATATAATACAGATAAAAGAATGCGGCATACAACTCATGGAGGTTTCT 206
Query 2330 --ATA---G--T-A--G--G-AAAAGATCTGGAACTGAAGACGGAAACAAGCCTGCAGAG 2376
||| | | | | | ||||||||||||||||| || ||||||||||||| ||||
Sbjct 207 CCATATCTGGATGATAGTAGGAAAAGATCTGGAACTGAGGATGGAAACAAGCCTGGAGAG 266
Query 2377 AACGACGAAGAGTTAAGGAGAATCAGGAAGCAAATGCGTGTACGCATGACCAAGCATTGG 2436
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 267 AACGACGAAGAGTTAAGGAGAA---G----CAAATTTGTGTACGCATGACCAAGCATTGA 319
Query 2437 TAA 2439
|||
Sbjct 320 TAA 322
> Ahg915590 jgi|Araly1|915590|Al_scaffold_0008_341
Length=5517
Score = 207 bits (112), Expect = 2e-52
Identities = 181/213 (85%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 1894 GATAGCTGGCAGAACCACCCT-GAGGAGATCTCCACTTCTC-TCATGAGAGTAGACATGT 1951
||||| |||| |||||| ||| | || ||||| ||| || | ||||||||||||||||||
Sbjct 4540 GATAGTTGGCCGAACCATCCTGGTGG-GATCTTCACGTC-CATCATGAGAGTAGACATGT 4597
Query 1952 CTGGTAACAGTTTTGAA-AGACTTCCAGACACATGGACTTCCATTCAACCAAAAGATCTT 2010
||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 4598 CTGGTAACAGTTTC-AAGAGTCTTCCAGACACATGGACTTCCATTCAACCAAAAGACCTT 4656
Query 2011 ATCCTTGG-TAACTGCAAAAATCTCGTGTCACTACCAGAGCTCCCTGCAACGCTCTCTC- 2068
||| || ||| |||| |||||| | |||||| |||||||| ||||| ||||||| |
Sbjct 4657 ATC-TTCAATAATTGCAGAAATCTTGCGTCACTGCCAGAGCTTCCTGCGTCGCTCTC-CA 4714
Query 2069 TGCTAACGGCAAATAATTGTGTATCACTTGAGA 2101
|||||| ||| |||||||||| |||||||||||
Sbjct 4715 TGCTAATGGCTAATAATTGTGGATCACTTGAGA 4747
> Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346
Length=1161
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 1960 AGTTTTGAAAGACTTCCAGACACATGGACTTCCAT 1994
|||||||||||||||||||||||||||||||||||
Sbjct 35 AGTTTTGAAAGACTTCCAGACACATGGACTTCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91911761185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5