BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45276.1 Length=1527 Score E Sequences producing significant alignments: (Bits) Value Ahg356493 jgi|Araly1|356493|fgenesh1_pg.C_scaffold_8000280 1533 0.0 Ahg356488 jgi|Araly1|356488|fgenesh1_pg.C_scaffold_8000275 1500 0.0 Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346 241 1e-62 > Ahg356493 jgi|Araly1|356493|fgenesh1_pg.C_scaffold_8000280 Length=1491 Score = 1533 bits (830), Expect = 0.0 Identities = 1032/1131 (91%), Gaps = 8/1131 (1%) Strand=Plus/Plus Query 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264 |||| || |||||| ||||||| | ||| | ||||||| ||| ||| ||||||||||| Sbjct 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422 Query 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324 | ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| Sbjct 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482 Query 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384 | ||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| Sbjct 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542 Query 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443 |||| ||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| Sbjct 543 TGAGTTGAAGAAGAAAGAGTTGAG-ACAGACGAGCAGTGTGTTTGTTAAGCACGAGCAGC 601 Query 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 602 AGCCTGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661 Query 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563 |||||||| ||||||||||| ||| ||||||||||||||||||||||||| | ||||| Sbjct 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721 Query 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGaaaaaaaGAAT 623 || |||||||||||||| |||||||||||||| ||| ||||| |||||| |||||||||| Sbjct 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781 Query 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683 |||||||| ||||||||||| || ||||||||||| | ||| |||||||||||||||||| Sbjct 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841 Query 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743 ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||||| Sbjct 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901 Query 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961 Query 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021 Query 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923 ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 1022 CATCTGTTTCTCATTACAAACAGGGTCCAAAACTCTTTCATTCGCTTGGTCTTGAACTTA 1081 Query 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983 ||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| |||| Sbjct 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141 Query 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042 |||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| |||| Sbjct 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200 Query 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260 Query 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320 Query 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222 ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380 Query 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440 Query 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333 || || |||||| || ||||||||| ||||| || |||||||||||| ||| Sbjct 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491 Score = 305 bits (165), Expect = 5e-82 Identities = 197/213 (92%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60 ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176 Query 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120 || |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| | Sbjct 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236 Query 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296 Query 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213 ||||| ||||||||||||||||||||||||||| Sbjct 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329 > Ahg356488 jgi|Araly1|356488|fgenesh1_pg.C_scaffold_8000275 Length=1491 Score = 1500 bits (812), Expect = 0.0 Identities = 1026/1131 (91%), Gaps = 8/1131 (1%) Strand=Plus/Plus Query 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264 |||| || |||||| ||||||| | ||| | ||||||| ||| ||| ||||||||||| Sbjct 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422 Query 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324 | ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| Sbjct 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482 Query 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384 | ||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| Sbjct 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542 Query 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443 |||| |||||||||||||||| || || ||||| ||||| ||||||||| ||||||||| Sbjct 543 TGAGTTGAAGAAGAAAGAGTTAAG-ACAAACGAGCAGTGTGTTTGTTAAGAACGAGCAGC 601 Query 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503 |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 602 AGCCCGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661 Query 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563 |||||||| ||||||||||| ||| ||||||||||||||||||||||||| | ||||| Sbjct 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721 Query 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGaaaaaaaGAAT 623 || |||||||||||||| |||||||||||||| ||| ||||| |||||| |||||||||| Sbjct 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781 Query 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683 |||||||| ||||||||||| || ||||||||||| | ||| |||||||||||||||||| Sbjct 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841 Query 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743 ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||||| Sbjct 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901 Query 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961 Query 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021 Query 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923 ||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||| | Sbjct 1022 CATCTGTTTCTCATTACAAACAGAGTCCAAAACTCTTTCATTCGCTTGGTCTCGAACTTA 1081 Query 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983 ||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| |||| Sbjct 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141 Query 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042 |||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| |||| Sbjct 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200 Query 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260 Query 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320 Query 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222 ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380 Query 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440 Query 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333 || || |||||| || ||||||||| ||||| || |||||||||||| ||| Sbjct 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491 Score = 305 bits (165), Expect = 5e-82 Identities = 197/213 (92%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60 ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176 Query 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120 || |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| | Sbjct 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236 Query 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296 Query 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213 ||||| ||||||||||||||||||||||||||| Sbjct 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329 > Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346 Length=1161 Score = 241 bits (130), Expect = 1e-62 Identities = 168/186 (90%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 1150 AGCGGACCTTATTGCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCA 1209 ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 978 AGCGGACCTTATTGCCAAACTCATGTTTCGTAAAGAAAACTCAACACCACCTGTGCTTCA 1037 Query 1210 TTGCTCTGTTGAAGCACCAAGCCCATCAG-CAAATGGTGGGTCTTCAGGTTCAAGGGTGG 1268 |||||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| | Sbjct 1038 TTGCTCCGTTGAAGCACCAAGCTCTTCAGGCAA-TGGTGGGTCTTCAGGTTCAAGGGTTG 1096 Query 1269 GACTTCAGGTTCCTAAACGAG-AGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGG 1327 |||||||||||||||||| || ||||| || ||||||||||||||||| | ||||| || Sbjct 1097 GACTTCAGGTTCCTAAAC-AGGAGACTGAACCCTTCGTGAACCCATCAGCCTATGGTTGG 1155 Query 1328 TTCTAA 1333 || ||| Sbjct 1156 TTTTAA 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57173457745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5