BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45276.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356493 jgi|Araly1|356493|fgenesh1_pg.C_scaffold_8000280 1533 0.0
Ahg356488 jgi|Araly1|356488|fgenesh1_pg.C_scaffold_8000275 1500 0.0
Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346 241 1e-62
> Ahg356493 jgi|Araly1|356493|fgenesh1_pg.C_scaffold_8000280
Length=1491
Score = 1533 bits (830), Expect = 0.0
Identities = 1032/1131 (91%), Gaps = 8/1131 (1%)
Strand=Plus/Plus
Query 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264
|||| || |||||| ||||||| | ||| | ||||||| ||| ||| |||||||||||
Sbjct 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422
Query 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324
| ||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482
Query 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384
| ||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542
Query 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443
|||| ||||||||||||||||||| || |||||| ||||| |||||||||||||||||||
Sbjct 543 TGAGTTGAAGAAGAAAGAGTTGAG-ACAGACGAGCAGTGTGTTTGTTAAGCACGAGCAGC 601
Query 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 602 AGCCTGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661
Query 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563
|||||||| ||||||||||| ||| ||||||||||||||||||||||||| | |||||
Sbjct 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721
Query 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGaaaaaaaGAAT 623
|| |||||||||||||| |||||||||||||| ||| ||||| |||||| ||||||||||
Sbjct 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781
Query 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683
|||||||| ||||||||||| || ||||||||||| | ||| ||||||||||||||||||
Sbjct 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841
Query 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743
||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901
Query 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961
Query 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021
Query 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1022 CATCTGTTTCTCATTACAAACAGGGTCCAAAACTCTTTCATTCGCTTGGTCTTGAACTTA 1081
Query 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983
||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| ||||
Sbjct 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141
Query 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042
|||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| ||||
Sbjct 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200
Query 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260
Query 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320
Query 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380
Query 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440
Query 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333
|| || |||||| || ||||||||| ||||| || |||||||||||| |||
Sbjct 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491
Score = 305 bits (165), Expect = 5e-82
Identities = 197/213 (92%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60
||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176
Query 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120
|| |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
Sbjct 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236
Query 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296
Query 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213
||||| |||||||||||||||||||||||||||
Sbjct 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329
> Ahg356488 jgi|Araly1|356488|fgenesh1_pg.C_scaffold_8000275
Length=1491
Score = 1500 bits (812), Expect = 0.0
Identities = 1026/1131 (91%), Gaps = 8/1131 (1%)
Strand=Plus/Plus
Query 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264
|||| || |||||| ||||||| | ||| | ||||||| ||| ||| |||||||||||
Sbjct 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422
Query 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324
| ||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482
Query 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384
| ||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542
Query 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443
|||| |||||||||||||||| || || ||||| ||||| ||||||||| |||||||||
Sbjct 543 TGAGTTGAAGAAGAAAGAGTTAAG-ACAAACGAGCAGTGTGTTTGTTAAGAACGAGCAGC 601
Query 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 602 AGCCCGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661
Query 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563
|||||||| ||||||||||| ||| ||||||||||||||||||||||||| | |||||
Sbjct 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721
Query 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGaaaaaaaGAAT 623
|| |||||||||||||| |||||||||||||| ||| ||||| |||||| ||||||||||
Sbjct 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781
Query 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683
|||||||| ||||||||||| || ||||||||||| | ||| ||||||||||||||||||
Sbjct 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841
Query 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743
||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901
Query 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961
Query 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021
Query 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923
||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||| |
Sbjct 1022 CATCTGTTTCTCATTACAAACAGAGTCCAAAACTCTTTCATTCGCTTGGTCTCGAACTTA 1081
Query 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983
||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| ||||
Sbjct 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141
Query 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042
|||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| ||||
Sbjct 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200
Query 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260
Query 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320
Query 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380
Query 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440
Query 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333
|| || |||||| || ||||||||| ||||| || |||||||||||| |||
Sbjct 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491
Score = 305 bits (165), Expect = 5e-82
Identities = 197/213 (92%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60
||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176
Query 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120
|| |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
Sbjct 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236
Query 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296
Query 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213
||||| |||||||||||||||||||||||||||
Sbjct 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329
> Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346
Length=1161
Score = 241 bits (130), Expect = 1e-62
Identities = 168/186 (90%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 1150 AGCGGACCTTATTGCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCA 1209
||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 978 AGCGGACCTTATTGCCAAACTCATGTTTCGTAAAGAAAACTCAACACCACCTGTGCTTCA 1037
Query 1210 TTGCTCTGTTGAAGCACCAAGCCCATCAG-CAAATGGTGGGTCTTCAGGTTCAAGGGTGG 1268
|||||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| |
Sbjct 1038 TTGCTCCGTTGAAGCACCAAGCTCTTCAGGCAA-TGGTGGGTCTTCAGGTTCAAGGGTTG 1096
Query 1269 GACTTCAGGTTCCTAAACGAG-AGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGG 1327
|||||||||||||||||| || ||||| || ||||||||||||||||| | ||||| ||
Sbjct 1097 GACTTCAGGTTCCTAAAC-AGGAGACTGAACCCTTCGTGAACCCATCAGCCTATGGTTGG 1155
Query 1328 TTCTAA 1333
|| |||
Sbjct 1156 TTTTAA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5