BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45280.2
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2 2174 0.0
Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1 924 0.0
> Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2
Length=1414
Score = 2174 bits (1177), Expect = 0.0
Identities = 1335/1411 (95%), Gaps = 11/1411 (1%)
Strand=Plus/Plus
Query 1 GAACTTGTAAACCTTACTCTCGAAGAGTCCTCTGTT-ACTCATTTTTACATTGTa-aaaa 58
|||||||||||||||||||||||||| |||||| || ||||| |||||| | || ||||
Sbjct 1 GAACTTGTAAACCTTACTCTCGAAGACTCCTCT-TTCACTCA-TTTTAC-CT-TACAAAA 56
Query 59 aaaaCTTCTTTTCTTCTCTACGTGAAT---AAGAATCTGAAGAGTCATTTTCTCAAGAAT 115
| || |||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 57 ATAATTTCTACTCTTCTCTACGTGAATAAGAAGAATCTGAAGAGCCATTTTCTCAAGAAT 116
Query 116 GACGTGGCTAAAACAAATGTGGTCAAGCATTTTAGTGCTAGCCGTGGTGGTGATCGGAGC 175
| || ||||||| ||| |||||||||| |||| ||||| |||||||||||||| || ||
Sbjct 117 GGCGAGGCTAAAGCAATTGTGGTCAAGTTTTTTGGTGCTGGCCGTGGTGGTGATTGGGGC 176
Query 176 CAGAGCTGTGCCCATCACGTATCTTGAATCTGCAGTGGCTAAAGGAGCTGTGTGTTTGGA 235
|||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct 177 CAGAGCTGTGCCCATCACATATCTTGAATCCGCGGTAGCTAAAGGAGCTGTGTGTTTGGA 236
Query 236 TGGTAGCGCGCCAGCATACCATTTCGATAAGGGATCGGGCTCAGGAGTGAACAATTGGAT 295
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 237 TGGTAGCGCACCAGCATACCATTTCGATAAGGGATCTGGCTCAGGAGCGAACAATTGGAT 296
Query 296 CGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCGTTCAACGTAAAAG 355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 CGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCGTACAACGTAAAAG 356
Query 356 TACAATGAAGGGTTCTTCTAAGCTTATGAACAAAGACTTTGGTTTCTCCGGTATCTTGGG 415
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 TACAATGAAGGGTTCTTCTAAGCTTATGAACAAAGACTTTGGTTTCTCTGGTATCTTGGG 416
Query 416 TGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAATCAAAGTTCGGTATTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAATCAAAGTTCGGTATTG 476
Query 476 CGATGGTTCATCTTTCACCGGTGATATAGAAGCTGTTGATCCGACGCACAAGCTGTTCTT 535
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 477 CGATGGTTCATCTTTCACTGGCGATATAGAAGCTGTTGATCCGACGAACAAGCTGTTCTT 536
Query 536 TCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGGCTAAGGGAATGAGCAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 537 TCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGGCTAAGGGGATGAGCAA 596
Query 596 CGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGGAGCATTGGCTGCGATTCTACATTG 655
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGCTCAAAACGCGATACTCTCTGGTTGTTCAGCTGGAGCATTGGCTGCGATTCTACATTG 656
Query 656 CGACCAGTTCAAGTCCACTCTCCCTAAAACGGCTAAGGTCAAATGTGTTTCTGACGCTGG 715
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 CGACCAGTTCAAGTCCATTCTCCCTAAAACGGCTAAGGTCAAATGTGTTTCTGACGCCGG 716
Query 716 TTACTTCATCCACGGTAAGGATATCACTGGAGGATCTTACATCCAATCCTACTACGCCAA 775
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 TTACTTCATCCACGGTAAAGATATCACTGGAGGATCTTACATCCAATCGTACTACGCCAA 776
Query 776 AGTCGTAGCGACCCACGGATCTGCAAAGAGTCTACCTGCTTCTTGCACCTCAAGTATGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGTCGTAGCGACCCACGGATCTGCAAAGAGTCTACCTGCTTCTTGCACCTCAAGTATGAA 836
Query 836 GCCTGATTTGTGTTTCTTCCCTCAATACGTTGCTAAGACCTTACAAACACCGCTTTTCGT 895
||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 837 GCCCGAGTTGTGTTTCTTCCCTCAATACGTTGCTCAGACCTTGCAAACACCGCTTTTCGT 896
Query 896 CATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAATGTATTGGCACCAACCTCTGTTGA 955
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 897 CATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAACGTTTTGGCGCCAACCTCTGTTGA 956
Query 956 TAAAAGCAAAGCATGGAAGACTTGTAAGCTTGATCTTAAGAAGTGTACGGCCGCTCAGCT 1015
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAAAAGCAAAGCGTGGAAGACTTGTAAGCTTGATCTTAAGAAGTGTACGGCCGCTCAGCT 1016
Query 1016 TCAAACCGTTCAAGGATATAGAGACCAAGTGTTGGCTGCGTTGGCGCCTGTTCGATCCG- 1074
||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1017 TCAAACCGTTCAAGGGTATAGAGACCAAGTGTTGGCTGCGTTGGCACCGGTTCGATCCGA 1076
Query 1075 CGACGACGAACGGATTGTTCTTGGACTCGTGCCATGCTCATTGCCAAGGTGGAAGCGCTG 1134
| || |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1077 C-ACAACGAGCGGATTGTTCTTAGACTCGTGCCACGCTCATTGCCAAGGTGGAAGCGCTG 1135
Query 1135 CCACTTGGTCCGGCGACAAAGGTCCCACAGTCGCGAATACGAAAATGGCTAAGGCGGTTG 1194
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1136 CCACTTGGTCCGGCGATGGAGGTCCTACAGTGGCGAATACGAAAATGGCTAAGGCGGTTG 1195
Query 1195 GAGATTGGTTCTTTGAGAGGAGTACGTTTCAGAACGTAGATTGTTCATCGCTTAATTGCA 1254
||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1196 CAGATTGGTTCTTTGAAAGGAGTACGTTTCAGAACATAGATTGTTCATCGCTGAATTGCA 1255
Query 1255 ACCCTACTTGCCCTGCAGTATCTACTGAAGACTAAAATTTATTCATTGATGTCTTAAAAT 1314
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 1256 ACCCTACTTGCCCTGCAGTATCTACTGAAGACTAAATTTTATTTATTGATGTTTTAAAAT 1315
Query 1315 TTATTCATCTTTGGAATATTGTTCTTGAAATTTAAAAGTAAAATAATATAATTGATACAA 1374
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1316 TTATTCATCTTTGGAATATTGTTCTTGAAATTTAAAAGTACAATAATATAATTGATACAA 1375
Query 1375 TTTCATTCGAATAAATAAAATCCTTTGCCCT 1405
|||||||||||||||||||||| ||||||||
Sbjct 1376 TTTCATTCGAATAAATAAAATCATTTGCCCT 1406
> Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1
Length=1439
Score = 924 bits (500), Expect = 0.0
Identities = 1027/1274 (81%), Gaps = 66/1274 (5%)
Strand=Plus/Plus
Query 54 aaaaa-aaaaCTTCTTTTC-T-TCTCT-ACGTGAATAAGAATCT-GAAGAGT-CATTTTC 107
||||| ||||||| ||||| | ||||| || || |||||| | || || | |||||||
Sbjct 81 AAAAACAAAACTT-TTTTCTTCTCTCTAAC-CAAACAAGAATTTAGAGGACTCCATTTTC 138
Query 108 TCAAGAATGACGTGGCTAAAACAAATG-TGGTCAAGCATTT--TAGTGCTAGCCGTGGTG 164
|||||||| | |||| || | |||| |||||||| ||| ||||| | || ||||||
Sbjct 139 ACAAGAATGGGGAGGCTTAAGC-AATGTTGGTCAAG--TTTGCTAGTGTTGGCAGTGGTG 195
Query 165 GTGATCGGAGCCAGAGCTGTGCCCATCACGTATCT-TGAATCTGCAGTGGCTAAAGGAGC 223
||||||||| || |||| || |||||||| ||||| || | || || || ||||||||
Sbjct 196 GTGATCGGAACCGGAGCCGTTCCCATCACTTATCTACAAAGC-GCCGTTGCCAAAGGAGC 254
Query 224 TGTGTGTTTGGATGGTAGCGCGCCAGCATACCATTTCGA-TAAGGGATCGGGCTCAGGAG 282
|||||||||||||| || || ||||| || |||||||| ||||| | || || || |
Sbjct 255 CGTGTGTTTGGATGGGAGTGCACCAGCTTATCATTTCGACAAAGGG-TTTGGTTCGGGTG 313
Query 283 TGAACAATTGGATCGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCG 342
| |||||||||||||| || ||||| |||||||||||||| || ||| | ||| ||||
Sbjct 314 TTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGATGTCGCTTCATGTA 373
Query 343 TTCAACGTAAAAGTACAATGAAGGGTTCTTCTAAGCTT-ATGAACAAAGACTTTGG-TTT 400
| ||||||| |||||||||||||||| || || || ||||||||||||||||| |||
Sbjct 374 ATGAACGTAAGGGTACAATGAAGGGTTCGTCCAA-ATTCATGAACAAAGACTTTGGATTT 432
Query 401 CTCCGGTATCTTGGGTGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAAT 460
||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 433 -TCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTTTACAATTGGAACAGAAT 491
Query 461 CAAAGTTCGGTATTGCGATGGTTCATC-TTTCACCGGTGATATAGAAGCTGTTGATCCGA 519
|||||| || ||||||||||| ||||| ||| ||||| || ||||||| ||| |||||
Sbjct 492 CAAAGTACGATATTGCGATGGGTCATCCTTT-ACCGGCAATGTAGAAGCCGTTAATCCGG 550
Query 520 CGCACAAGCTGTTCTTTCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGG 579
|| | ||||||||||| |||||||| | ||||||||||||||||| |||||||||||||
Sbjct 551 CGAATAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGATTGATGATCTTATGG 610
Query 580 CTAAGGGAATGAGCAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGGAGCATTGG 639
|||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 611 CTAAAGGAATGAAAAACGCTCAAAACGCGATACTCTCCGGTTGTTCAGCCGGAGCATTGG 670
Query 640 CTGCGATTCTACATTGCGACCAGTT-CAAGT-CCACT-CT-CCCTAAAACGGCTAAG-GT 694
| |||||||||||||| ||| | || | || ||| | || ||| || | |||| | ||
Sbjct 671 CCGCGATTCTACATTGTGAC-ACTTTCC-GTGCCA-TACTTCCCCGAA-CAGCTA-GCGT 725
Query 695 CAAATGTGTTTCTGACGCTGGTTACTTCATCCACGGTAAGGATATCACTGGAGGATCTTA 754
|||||||||||| || || |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 726 CAAATGTGTTTCCGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGATCATA 785
Query 755 CATCCAATCCTACTAC-GCCAAAGTCGTAGCGAC-CCACGGATCTGCAAAGAGTCTACCT 812
|||| |||| |||||| || |||||||| ||| | ||| ||||||||||||||||| |||
Sbjct 786 CATCGAATCGTACTACAGC-AAAGTCGTCGCG-CTCCATGGATCTGCAAAGAGTCTTCCT 843
Query 813 GCTTCTTGCACCTCAAGTATGAAGCCTGATTTGTGTTTCTTCCCTCAATACGTTGCTAAG 872
| |||||||||||||| ||||| || || | ||||||||||| ||||| || | |
Sbjct 844 GTTTCTTGCACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCCCAATATGTCGTTCCT 903
Query 873 ACCTTACAAACACCGCT-TTTCGTCATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAA 931
|| | | ||||||||| ||| |||||||| ||||||| |||||| ||||||||||||||
Sbjct 904 TCCATGCGAACACCGCTCTTT-GTCATCAACGCCGCCTACGATTCATGGCAGATCAAGAA 962
Query 932 TGTATTGGCACCAACCT-CTGTTGATAAAAGCAAAGCA-TGGAAGACTTGTAAGCTTGAT 989
|| ||||| || || | |||||||||| | ||| || ||||||| |||||||||||||
Sbjct 963 CGTTTTGGCTCCCAC-TGCTGTTGATAAGGGAAAA-CAATGGAAGAATTGTAAGCTTGAT 1020
Query 990 CTTAAGAAGTGTACG-GCCGCTCAGCTTCAAA-CCGTTCAAGGATATAGAGACCA-AGTG 1046
|| ||||| |||| | ||||||||||| |||| |||| ||||| | |||||| || | ||
Sbjct 1021 CTCAAGAAATGTA-GTGCCGCTCAGCT-CAAAACCGTCCAAGGGTTTAGAGATCAGA-TG 1077
Query 1047 TTG-GCTGCGTTGGCGCCTGTTCG-A-TCCGC-GACGACGAACGGATTGTTCTTGGACTC 1102
|| | ||| || | || |||| | | | | | ||| || || |||||||| |||||
Sbjct 1078 ATGCG-TGCATTATCACCGGTTCACAGTACACCGTCGA-GAG-GG-TTGTTCTTAGACTC 1133
Query 1103 GTGCCATGCTCATTGCCAAGGTGGAAGCGCTGCCACTTGGTCCGGCGACAAAGGTCCC-A 1161
||| || |||||||||||||| |||||||| ||| |||||||||| |||||||||||| |
Sbjct 1134 GTGTCACGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCA 1193
Query 1162 CAGTCGCGAATACGAAAATGGCTAAGGCGGTTGGAGATTGGTTCTT-TGAGA-GGAGTAC 1219
| |||| ||||||| ||| || || || || ||| | ||||| || || | ||||| |
Sbjct 1194 AA-TCGCTAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTT-TTATG-GTCGGAGTGC 1250
Query 1220 GTTTCAGAACG-TAGATTGTTCATCGCTTAATTGCAACCCTACTTGCCCTGCAGTATCTA 1278
|||||||| | |||| ||| | |||| | ||| || ||||| || |||||| | || |
Sbjct 1251 ATTTCAGAA-GATAGACTGTCCGTCGCCGACTTGTAATCCTACGTGTCCTGCAATTTCAA 1309
Query 1279 CTGAAGACTAAAAT 1292
|||||||||| |||
Sbjct 1310 CTGAAGACTAGAAT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5