BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45290.2
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494453 jgi|Araly1|494453|fgenesh2_kg.8__269__AT5G45290.2 3352 0.0
> Ahg494453 jgi|Araly1|494453|fgenesh2_kg.8__269__AT5G45290.2
Length=2227
Score = 3352 bits (1815), Expect = 0.0
Identities = 2116/2254 (94%), Gaps = 50/2254 (2%)
Strand=Plus/Plus
Query 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60
Query 61 AAAA-TCTTTCCTTTTCTTCAAAGCATTTCTCTTTGATTCAAAGACAACACACATAGCTT 119
|||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 61 AAAACTCTTTCCTTTTCTTCAAAGCATTTCTCTTTGGTT-AAAGAAAACACACATAGCTT 119
Query 120 AGTTCCTACATTAATTTCTCGCAATaaaaaaaGTTCAGATTTCGAGGTA-TTCTTGC-AA 177
|| | | | || | | | | ||||||| |||||||||| ||||| || || | ||
Sbjct 120 AG-T--TGC-TTCA--T-T----A-AAAAAAACTTCAGATTTCTAGGTACTTTTTCCAAA 167
Query 178 TCTCGATCGAGTTTCAGATCTGGGGATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 237
| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 168 T-T-GATCGAGTTTCAGATCT-GGAATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 224
Query 238 ATGACGAATTCGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ATGACGAATTGGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 284
Query 298 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAGACTTGTGGGTCTT 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 285 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAAACTTGTGGGTCTT 344
Query 358 GTGTCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GTGGCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 404
Query 418 CCGGAGCAAATCATGTCTAGGCTCGTCGGC-GATGGCGAGAGAAGCTTCTGACGTGGCTC 476
|||||||||||||||||||||||||| || | |||||||||| ||||||||||||||
Sbjct 405 TCGGAGCAAATCATGTCTAGGCTCGTC-GCTGGCAGCGAGAGAAGTTTCTGACGTGGCTC 463
Query 477 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGAAGAAGATCAAAGAGTCTTTTTT 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 464 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGGAGAAGATCAAAGAGTCTTTTTT 523
Query 537 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATTACAGTGATGATGATA 596
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 524 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATGATAGTGACGATGATA 583
Query 597 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTACACGGCGTA 656
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 584 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTTCACGGCGTA 643
Query 657 GAATGGA-ATCGAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGATAAG 715
||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 644 GAATGGAGA-CAAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGAGAAG 702
Query 716 AAATCTGAAAACGAAAGACATTGTGATGAGCTTGAGCTTGATGATGAGTGTGGTGTTGAA 775
|||||||||||||||| |||||||||||||||||||||||| | || | | |||
Sbjct 703 AAATCTGAAAACGAAACACATTGTGATGAGCTTGAGCTTGA--A-GA---AGAAGAAGAA 756
Query 776 GAAGAAGAAGAGGAAGCTAGTGTAAGCAATGTACAGATGAGAAATGTTAGCGGTTCGATT 835
||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct 757 GAAGAAGAAGAGGAAGCTAATGTAAGCAATGTACAGAGGGGAAATGTTAGTGGTTCGATT 816
Query 836 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATTCCTGGTAACATA 895
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 817 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATCCCTGGTAACATA 876
Query 896 AGCTCTAGACTTAGCAGAGCTTCAAGTTCAAGATCCTTCAACACGACTTATCCAGTCTCT 955
|||||||||||| |||||| ||||| ||||||| |||||||| |||||||| ||||||
Sbjct 877 GGCTCTAGACTTACCAGAGCATCAAGCTCAAGATTTTTCAACACTACTTATCCGGTCTCT 936
Query 956 TCTTCTCAT-AGAGAAGATGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCAATGA 1014
||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 937 TCTTCTCTTCA-AGAAGAAGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCATTGA 995
Query 1015 TAGAGTTGAGTCTCCGAGAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1074
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TAGAATCGAGTCTCCGATAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1055
Query 1075 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGATAGTAC 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1056 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGACAGTAG 1115
Query 1135 TTATGCTGGACTTCTTGATAGAAGACATGTTGTACGAGAACCTTCTATTGAGCGCAATGT 1194
|||||||||| |||||||||||||||||||||| || || ||||| ||||| || |||||
Sbjct 1116 TTATGCTGGAATTCTTGATAGAAGACATGTTGTTCGGGAGCCTTCCATTGATCGGAATGT 1175
Query 1195 TAGATTTAGTAGAACTCTGAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGCCGATCTTC 1254
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1176 TAGATTTAGCAGAACTCTGAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGCCGATCTTC 1235
Query 1255 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1295
Query 1315 CTCTGCTGAAACCGCAGCAGCAGAGGATGCTCCTGTGACTTCAACGTCTATACTAAATCG 1374
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1296 CTCTGCTGAAACCGCAGCAGCAGAGGATACTCCTGTGACTTCAACGTCTATACTAAATCG 1355
Query 1375 TTCCGCTTCTAGCATTCGAAGGACCTTATTCGGCATTCAGGATCATGAGACACCAGCTGC 1434
||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1356 ATCCGCTTCTAGCATTCGAAGGACCTTATTTGGCATTCAAGATCACGAGACACCAGCTGC 1415
Query 1435 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1475
Query 1495 AAGGAGGAGAATAAGATCTCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1554
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 AAGGAGGAGAATAAGATCGCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1535
Query 1555 TGTCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGCTG 1614
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1536 TGCCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGTTG 1595
Query 1615 CACATGCCGTGCAGTTACTAACCGTGGTTCGACAACAGCAACAACCGATGAAACAAATGC 1674
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1596 CACATGCCGTGCGGTTACTAACCGTGGTTCCACAACAGCAACAACCGATGAAACAAATGC 1655
Query 1675 AAGAGCTAGCATCTCAAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1734
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 AAGAGCTAGCATCTCGAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1715
Query 1735 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1775
Query 1795 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1835
Query 1855 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTAT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1836 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACACTAT 1895
Query 1915 AAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAGGA 1974
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1896 AAGGACACTTCCTTGTCATCATGAATTCCACAAAGCCTGTGTGGATAAATGGCTCAAGGA 1955
Query 1975 GATTCACAGCAGAGTATGTCCGCTGTGTCGAGGAGATATTTGTAGACATGATCCATCATC 2034
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1956 GATTCACAGCAGAGTGTGTCCGCTATGTCGAGGAGATATTTGTAGACATGATCCATCATT 2015
Query 2035 GGAACAACATTGATTACAGTCTTATAGACATAATGCTGAAAGATTTTGATTCTACAAGAG 2094
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2016 GGAACAACATTGATTACAGTCTTATAGACATAGTGCTGAAAGATTTTGATTCTACAAGAG 2075
Query 2095 ACCAAGAACATTCATCGGTTTTTGCCTGCAACTGAATCAATATTGTTGTGTGTTTGCTTT 2154
|||| |||||||||||||||| |||||||||||||||||| | |||||||| |||||||
Sbjct 2076 ACCAGGAACATTCATCGGTTTGTGCCTGCAACTGAATCAAAAATGTTGTGT-TTTGCTT- 2133
Query 2155 TTGTTTCGTAGCTTACAATGGAAAACAAAAGTGACAGTTTAAAAGATGTAAACTTGT-AT 2213
| | || |||||||||||| | | | |||||||||||||||||| | |
Sbjct 2134 ---------A-C--AC--TGGAAAACAAAATTCATACTTTAAAAGATGTAAACTTATGA- 2178
Query 2214 ACCAATTTGATCCAGCATATCTGTAAGAAA-GTT 2246
||||| |||||||||||||||||||||||| |||
Sbjct 2179 ACCAAATTGATCCAGCATATCTGTAAGAAATGTT 2212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5