BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45290.2 Length=2276 Score E Sequences producing significant alignments: (Bits) Value Ahg494453 jgi|Araly1|494453|fgenesh2_kg.8__269__AT5G45290.2 3352 0.0 > Ahg494453 jgi|Araly1|494453|fgenesh2_kg.8__269__AT5G45290.2 Length=2227 Score = 3352 bits (1815), Expect = 0.0 Identities = 2116/2254 (94%), Gaps = 50/2254 (2%) Strand=Plus/Plus Query 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60 Query 61 AAAA-TCTTTCCTTTTCTTCAAAGCATTTCTCTTTGATTCAAAGACAACACACATAGCTT 119 |||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 61 AAAACTCTTTCCTTTTCTTCAAAGCATTTCTCTTTGGTT-AAAGAAAACACACATAGCTT 119 Query 120 AGTTCCTACATTAATTTCTCGCAATaaaaaaaGTTCAGATTTCGAGGTA-TTCTTGC-AA 177 || | | | || | | | | ||||||| |||||||||| ||||| || || | || Sbjct 120 AG-T--TGC-TTCA--T-T----A-AAAAAAACTTCAGATTTCTAGGTACTTTTTCCAAA 167 Query 178 TCTCGATCGAGTTTCAGATCTGGGGATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 237 | | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 168 T-T-GATCGAGTTTCAGATCT-GGAATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 224 Query 238 ATGACGAATTCGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 297 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ATGACGAATTGGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 284 Query 298 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAGACTTGTGGGTCTT 357 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 285 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAAACTTGTGGGTCTT 344 Query 358 GTGTCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 417 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 GTGGCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 404 Query 418 CCGGAGCAAATCATGTCTAGGCTCGTCGGC-GATGGCGAGAGAAGCTTCTGACGTGGCTC 476 |||||||||||||||||||||||||| || | |||||||||| |||||||||||||| Sbjct 405 TCGGAGCAAATCATGTCTAGGCTCGTC-GCTGGCAGCGAGAGAAGTTTCTGACGTGGCTC 463 Query 477 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGAAGAAGATCAAAGAGTCTTTTTT 536 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 464 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGGAGAAGATCAAAGAGTCTTTTTT 523 Query 537 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATTACAGTGATGATGATA 596 |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 524 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATGATAGTGACGATGATA 583 Query 597 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTACACGGCGTA 656 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 584 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTTCACGGCGTA 643 Query 657 GAATGGA-ATCGAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGATAAG 715 ||||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 644 GAATGGAGA-CAAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGAGAAG 702 Query 716 AAATCTGAAAACGAAAGACATTGTGATGAGCTTGAGCTTGATGATGAGTGTGGTGTTGAA 775 |||||||||||||||| |||||||||||||||||||||||| | || | | ||| Sbjct 703 AAATCTGAAAACGAAACACATTGTGATGAGCTTGAGCTTGA--A-GA---AGAAGAAGAA 756 Query 776 GAAGAAGAAGAGGAAGCTAGTGTAAGCAATGTACAGATGAGAAATGTTAGCGGTTCGATT 835 ||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 757 GAAGAAGAAGAGGAAGCTAATGTAAGCAATGTACAGAGGGGAAATGTTAGTGGTTCGATT 816 Query 836 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATTCCTGGTAACATA 895 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 817 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATCCCTGGTAACATA 876 Query 896 AGCTCTAGACTTAGCAGAGCTTCAAGTTCAAGATCCTTCAACACGACTTATCCAGTCTCT 955 |||||||||||| |||||| ||||| ||||||| |||||||| |||||||| |||||| Sbjct 877 GGCTCTAGACTTACCAGAGCATCAAGCTCAAGATTTTTCAACACTACTTATCCGGTCTCT 936 Query 956 TCTTCTCAT-AGAGAAGATGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCAATGA 1014 ||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 937 TCTTCTCTTCA-AGAAGAAGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCATTGA 995 Query 1015 TAGAGTTGAGTCTCCGAGAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1074 |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 996 TAGAATCGAGTCTCCGATAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1055 Query 1075 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGATAGTAC 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1056 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGACAGTAG 1115 Query 1135 TTATGCTGGACTTCTTGATAGAAGACATGTTGTACGAGAACCTTCTATTGAGCGCAATGT 1194 |||||||||| |||||||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 1116 TTATGCTGGAATTCTTGATAGAAGACATGTTGTTCGGGAGCCTTCCATTGATCGGAATGT 1175 Query 1195 TAGATTTAGTAGAACTCTGAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGCCGATCTTC 1254 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1176 TAGATTTAGCAGAACTCTGAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGCCGATCTTC 1235 Query 1255 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1236 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1295 Query 1315 CTCTGCTGAAACCGCAGCAGCAGAGGATGCTCCTGTGACTTCAACGTCTATACTAAATCG 1374 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1296 CTCTGCTGAAACCGCAGCAGCAGAGGATACTCCTGTGACTTCAACGTCTATACTAAATCG 1355 Query 1375 TTCCGCTTCTAGCATTCGAAGGACCTTATTCGGCATTCAGGATCATGAGACACCAGCTGC 1434 ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 1356 ATCCGCTTCTAGCATTCGAAGGACCTTATTTGGCATTCAAGATCACGAGACACCAGCTGC 1415 Query 1435 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1416 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1475 Query 1495 AAGGAGGAGAATAAGATCTCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1554 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1476 AAGGAGGAGAATAAGATCGCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1535 Query 1555 TGTCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGCTG 1614 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1536 TGCCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGTTG 1595 Query 1615 CACATGCCGTGCAGTTACTAACCGTGGTTCGACAACAGCAACAACCGATGAAACAAATGC 1674 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1596 CACATGCCGTGCGGTTACTAACCGTGGTTCCACAACAGCAACAACCGATGAAACAAATGC 1655 Query 1675 AAGAGCTAGCATCTCAAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1734 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1656 AAGAGCTAGCATCTCGAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1715 Query 1735 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1716 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1775 Query 1795 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1776 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1835 Query 1855 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTAT 1914 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1836 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACACTAT 1895 Query 1915 AAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAGGA 1974 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1896 AAGGACACTTCCTTGTCATCATGAATTCCACAAAGCCTGTGTGGATAAATGGCTCAAGGA 1955 Query 1975 GATTCACAGCAGAGTATGTCCGCTGTGTCGAGGAGATATTTGTAGACATGATCCATCATC 2034 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1956 GATTCACAGCAGAGTGTGTCCGCTATGTCGAGGAGATATTTGTAGACATGATCCATCATT 2015 Query 2035 GGAACAACATTGATTACAGTCTTATAGACATAATGCTGAAAGATTTTGATTCTACAAGAG 2094 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2016 GGAACAACATTGATTACAGTCTTATAGACATAGTGCTGAAAGATTTTGATTCTACAAGAG 2075 Query 2095 ACCAAGAACATTCATCGGTTTTTGCCTGCAACTGAATCAATATTGTTGTGTGTTTGCTTT 2154 |||| |||||||||||||||| |||||||||||||||||| | |||||||| ||||||| Sbjct 2076 ACCAGGAACATTCATCGGTTTGTGCCTGCAACTGAATCAAAAATGTTGTGT-TTTGCTT- 2133 Query 2155 TTGTTTCGTAGCTTACAATGGAAAACAAAAGTGACAGTTTAAAAGATGTAAACTTGT-AT 2213 | | || |||||||||||| | | | |||||||||||||||||| | | Sbjct 2134 ---------A-C--AC--TGGAAAACAAAATTCATACTTTAAAAGATGTAAACTTATGA- 2178 Query 2214 ACCAATTTGATCCAGCATATCTGTAAGAAA-GTT 2246 ||||| |||||||||||||||||||||||| ||| Sbjct 2179 ACCAAATTGATCCAGCATATCTGTAAGAAATGTT 2212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85703051250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5