BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45300.1
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356484 jgi|Araly1|356484|fgenesh1_pg.C_scaffold_8000271 3094 0.0
> Ahg356484 jgi|Araly1|356484|fgenesh1_pg.C_scaffold_8000271
Length=2049
Score = 3094 bits (1675), Expect = 0.0
Identities = 1922/2043 (94%), Gaps = 9/2043 (0%)
Strand=Plus/Plus
Query 46 TCACCACCACCACCGGTTCGCAAGATCCGAATCTCGACCCAATTCCAGACCCGGATCAAT 105
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 11 TCAACACCACCACCGGTTCGCAAGATCCGAATCTCGACCCGATTCCAGACCCGGGTCAAT 70
Query 106 TTCCCAACCGGAACCGCAACCAACCACAATCTCGCCGCCCTCGCGGATTCGCCGCTGCAG 165
|||||||||| || ||||||| | ||||||||| | || || || || |||||||| |
Sbjct 71 TTCCCAACCGAAATCGCAACCTTCAACAATCTCGAAGGCCACGTGGCTTTGCCGCTGCGG 130
Query 166 CAGCAGCAGCGTCGATAGCTCCAACGGAAAACGATGTAAACAACGGAAACATCGCCGGAA 225
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CTGCAGCAGCGTCAATAGCTCCAACGGAAAACGATGTAAACAACGGAAACATCGCCGGAA 190
Query 226 Tcggcggtggagaaggaagcagcggcggcggaggaggtggaggagggaaagggaagagag 285
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||
Sbjct 191 TCGGCGGTGGAGAAGGAAGCAGCAGCGGAGGAGGAGGAGGAGGAGGGAAAGGGAAGAGAG 250
Query 286 agagggagaaggaaaaagagagaacgaagcttagagaaagaCATAGACGAGCAATCACTA 345
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 251 AGAGGGAAAAGGAAAAAGAGAGAACGAAGCTTAGAGAAAGACATAGACGAGCAATCACAA 310
Query 346 GTAGAATGCTCGCCGGATTAAGACAGTACGGTAATTTTCCGTTACCGGCGCGTGCTGATA 405
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 311 GTAGAATGCTCGCCGGATTAAGACAGTACGGTAACTTTCCGTTACCGGCGCGTGCTGATA 370
Query 406 TGAATGACGTAATCGCTGCTTTGGCTCGTGAAGCTGGTTGGAGTGTTGAAGCCGATGGTA 465
|||| || ||||||||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct 371 TGAACGATGTAATCGCTGCTTTGGCTCGTGAAGCTGGGTGGAGTGTTGACGCTGACGGTA 430
Query 466 CTACTTATCGGCAATCACAGCAACCAAATC-ATGTGGTACAGTTTCCGACGAGATCTATT 524
||||||||||||||||||| ||||| || | ||||||| |||||||||||||||||||||
Sbjct 431 CTACTTATCGGCAATCACATCAACCGAA-CAATGTGGTTCAGTTTCCGACGAGATCTATT 489
Query 525 GAGAGTCCACTTTCTTCTAGTACATTGAAGAACTGTGCTAAGGCTGCAATTGAATCTCAG 584
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||
Sbjct 490 GAGAGTCCACTTTCTTCTAGTACATTAAAGAACTGTGCTAAAGCTGCACTTGAATGTCAG 549
Query 585 CAGCATTCAGTTCTTAGGAA-CGATGAGAAACTTGCTCCTGTGTCTCTTGATTCTATTGG 643
|||||||| ||||||| ||| ||||||||| ||| |||| ||||||||||||||| |||
Sbjct 550 CAGCATTCGGTTCTTA-GAATCGATGAGAATCTTTCTCCGGTGTCTCTTGATTCTGTTGT 608
Query 644 TATTGCCGAGAGTGATCATCCCGGGAATGGAAGGTATACTAGTGTTAGTCCTATCACCTC 703
||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 609 TATCGCCGAGAGTGATCATCCCGGGAATGGAAGGTATACTGGTGCTAGTCCTATCGCCTC 668
Query 704 CGTTGGATGCTTGGAAGCCAATCAGCTTATACAAGATGTTCATTCCGCAGAGCAATGTAA 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 669 GGTTGGATGCTTGGAAGCCAATCAGCTTATACAAGATGTTCATTCCGCAGAGCAACGTAA 728
Query 764 TGACTTCACAGAGAGCTTTTATGTCCCTGTGTACGCCATGCTTCCAGTTGGCATTATAGA 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TGACTTCACAGAGAGCTTTTATGTCCCTGTGTACGCCATGCTTCCAGTTGGCATTATAGA 788
Query 824 CAACTTTGGCCAGTTGGTTGATCCTGAAGGTGTAAGACAAGAATTAAGTTACATGAAGTC 883
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 789 CAGCTTTGGCCAGTTGGTTGATCCTGAAGGTGTAAGGCAAGAATTAAGTTACATGAAGTC 848
Query 884 ATTAAATGTCGATGGAGTAGTAATAGATTGTTGGTGGGGAATAGTTGAAGGATGGAACCC 943
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 849 ATTAAATGTCGACGGAGTGGTAATAGATTGTTGGTGGGGAATAGTTGAAGGATGGAATCC 908
Query 944 TCAGAAATATGTATGGTCTGGCTATAGGGAGCTCTTTAACCTTATCAGAGACTTCAAACT 1003
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 909 TCAGAAATATGTATGGTCTGGCTATAGGGAGCTCTTTAACATTATCAGAGACTTCAAACT 968
Query 1004 TAAGCTACAGGTGGTGATGGCATTTCATGAGTATGGAGGGAATGCATCTGGGAATGTGAT 1063
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 969 TAAACTACAGGTGGTGATGGCATTTCATGAATATGGAGGGAATGCATCTGGAAATGTTAT 1028
Query 1064 GATTTCGTTGCCACAGTGGGTGTT-GAAGATTGGGAAAGACAATCCAGACAt-ttttttC 1121
||| |||||||| |||||||| || |||| |||| ||||||||||||||||| ||||||
Sbjct 1029 GATCTCGTTGCCCCAGTGGGTTTTGGAAG-TTGGAAAAGACAATCCAGACATATTTTTT- 1086
Query 1122 ACTGATCGTGAAGGAAGAAGAAGTTTCGAGTGTTTGAATTGGAGCATTGACAAGGAACGG 1181
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1087 ACTGATCGTGAAGGAAGAAGGAGTTTCGAGTGTTTGAATTGGAGCATTGACAAGGAACGG 1146
Query 1182 GTATTGCATGGACGAACTGGTATAGAGGTCTATTTTGATTTTATGAGAAGCTTCCGGTCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GTATTGCATGGACGAACTGGTATAGAGGTCTATTTTGATTTTATGAGAAGCTTCCGGTCA 1206
Query 1242 GAGTTTGATGACTTGTTTGTGGAAGGACTAATTACTGCGGTTGAGATTGGTCTTGGAGCT 1301
|||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1207 GAGTTTGATGACTTCTTTGTGGAAGGACTAATTGCTGCAGTTGAGATTGGTCTTGGAGCG 1266
Query 1302 TCTGGTGAACTAAAGTACCCATCTTTCCCAGAAAGGATGGGTTGGATTTATCCCGGTATC 1361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GCTGGTGAACTGAAGTACCCATCTTTCCCAGAAAGGATGGGTTGGATTTATCCCGGTATT 1326
Query 1362 GGTGAGTTTCAGTGTTATGACAAATATTCGCAATTGAGTCTGCAAAAGGAAGCAAAGTCA 1421
|||||||||||||||||||||||||||||||| || | |||||||||||||||||| |||
Sbjct 1327 GGTGAGTTTCAGTGTTATGACAAATATTCGCAGTTAAATCTGCAAAAGGAAGCAAAATCA 1386
Query 1422 CGAGGATTCACTTTCTGGGGTAAAGGACCAGAGAATGCTGGTCAATACAGTTCTCATCCA 1481
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1387 CGAGGATTCGCTTTCTGGGGTAAAGGACCAGAGAATGCTGGTCAATACAATTCTCAACCA 1446
Query 1482 CATGAAACTGTGTTCTTCCAAGAAAGAGGTGAATATGACAGCTATTATGGCCGCTTCTTC 1541
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1447 CATGAAACTGGGTTCTTCCAAGAAAGAGGTGAATATGACAGCTACTATGGCCGCTTCTTC 1506
Query 1542 TTAAATTGGTACTCACAATTGCTAATTGGTCATGCTGAGAATGTTCTGTCTCTTGCAAAT 1601
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1507 TTAAATTGGTATTCGCAATTGCTAATCGGTCATGCTGAGAATGTTCTGTCTCTTGCAAAT 1566
Query 1602 CTCGCATTTGAGGAGACGAAGATTATTGTCAAGATACCGGCAATATACTGGTCATACAAG 1661
||||| ||||||||||| |||||||||||||||||||| || || |||||||| ||||||
Sbjct 1567 CTCGCGTTTGAGGAGACAAAGATTATTGTCAAGATACCAGCGATTTACTGGTCTTACAAG 1626
Query 1662 ACAGCTAGTCATGCTGCTGAATTAACTGCAGGATACTACAACCCTTCAAACCGTGATGGG 1721
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1627 ACAGCTAGTCATGCTGCTGAATTAACTGCAGGATACTATAACCCTTCAAACCGTGATGGG 1686
Query 1722 TACTCTCTTGTTTTCGAAACTCTGAAGAAATATTCCGTGACTGTGAAGTTTGTGTGCCCT 1781
||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||
Sbjct 1687 TACTCTCTTGTTTTCGAAACTTTGAAGAAGTATTCTGTGACTGCAAAGTTTGTGTGCCCT 1746
Query 1782 GGGCCACAAATGTCTCCCAATGCGCATGAAGAAGCATTAGCTGATCCAGAAGGTTTAAGT 1841
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 GGGCCACAAATGTCTCCGAATGCGCATGAAGAAGCATTAGCTGATCCAGAAGGTTTAAGT 1806
Query 1842 TGGCAGGTGATCAACGCAGCTTGGGATAAGGGACTTCAAATCGGTGGAGAGAATGCGATT 1901
|||||||||||||| |||||||||||||||||||||| || || ||||||||| ||||
Sbjct 1807 TGGCAGGTGATCAATGCAGCTTGGGATAAGGGACTTCTTATTGGAGGAGAGAATATGATT 1866
Query 1902 ACTTGTTTCGACAGAGATGGTTGTATGAGATTAATCGATATAGCTAAACCAAGAAACCAT 1961
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1867 ACTTGCTTCGATAGAGAAGGTTGTATGAGATTAATCGATATAGCTAAACCGAGGAACCAT 1926
Query 1962 CCAGATGGCTATCACTTCTCCTTCTTCACATATCGTCAACCTTCTCCTCTGGTTCAAGGA 2021
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 CCAGATAGCTATCACTTCTCCTTCTTCACATATCGTCAACCTTCTCCTCTGGTTCAAGGA 1986
Query 2022 TCTACTTGCTTTCCAGATTTGGACTACTTCATTAAACGCATGCATGGCGACATA-AGAGA 2080
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||
Sbjct 1987 TCTACTTGCTTTCCAGATTTGGACTACTTCGTAAAACGCATGCACGGCGACATACAGAGA 2046
Query 2081 TAA 2083
|||
Sbjct 2047 TAA 2049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5