BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45310.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330871 jgi|Araly1|330871|fgenesh1_pm.C_scaffold_8000214 1530 0.0
> Ahg330871 jgi|Araly1|330871|fgenesh1_pm.C_scaffold_8000214
Length=1059
Score = 1530 bits (828), Expect = 0.0
Identities = 988/1065 (93%), Gaps = 12/1065 (1%)
Strand=Plus/Plus
Query 133 ATGGATCTTGGAGGTTTGATTTCTGGGTTGGTCTCATCTTCA-TTATATCTTATGACCAG 191
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 1 ATGGATCTTGGAGGTTTGATTTCTGGCTTGGTCTCATCTTCAGTT-TATCTTATGACCAG 59
Query 192 ACCTTTCTTTTTCTGCATATAC-GCATGTGTGTTCTGTCTTAGAACAGCTCTTGTTACAA 250
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 60 ACCTTTCTTTTTCTGCATAT-CTGCATGTGTGTTCTGTCTTAGAACAGCTCTTGTCACAA 118
Query 251 CCTTTGTATCTACTGATATGGTGACTTCTGCAATTTGGTTCAACTTAAGTATGCTGTGGA 310
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 CCTTTGTGTCTACTGATATGGTGACTTCTGCAATTTGGTTCAACTTAAGTATGCTCTGGA 178
Query 311 GAGCTGTACGGGGCTCTATCTGGGGATCCGTTCTTCTTTTTACGTTCCCGATTCGCTTTT 370
||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 GAGCTGTGTGGGGATCAATCTGGGGATCGGTTCTTCTTTTTACGTTCCCGATTCGCTTTT 238
Query 371 TCGCCTCTATACCAAGGGAAAGACTGCTTGAGCAGAGTATTTATGATTTGAGGTATGAGC 430
||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 239 TCGTCTCTATACCAAGGGAAAGACTGCTTGAGCAGAGTATTTATGAGTTGCGGTATGAGG 298
Query 431 TAGAGAGTCTTGAATGGAATAGAAAAGAGATAGAGAAGAATCTCCGGGAAGCAATAAAAG 490
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 299 TAGAGAGTCTTGAAAGGAATAGAAAAGAGATAGAGGAGAATCTCCGGGCAGCAATAAAAG 358
Query 491 AATATCGAATCATGGAACAG-GACTTAGATGAACTAGAAGATGAACATGATGAAGCCATT 549
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 359 AATACCGAATCATGGAAC-GCGACTTAGATGAACTAGAAGATGAACATGATGAAGCTATT 417
Query 550 TCCAAAATAGAAAAGCTAGAGGCCGAGCTACAAGAACTAAAGGAGGAAAATCTTCAACTG 609
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 418 TCCAAAATAGAAAAGCTAGAGGCTGAGCTGCAAGAACTAAAAGAGGAAAATCTTCAGTTG 477
Query 610 ATGGAAGTTAATGGAAAAGACTATAGGAGCAAGAAGGGCAAAGTTA-AACCAAGTGAAGA 668
| |||||||||| ||||||||||| |||||||||| | |||||||| |||| ||||||||
Sbjct 478 AAGGAAGTTAATAGAAAAGACTATTGGAGCAAGAAAGACAAAGTTATAACC-AGTGAAGA 536
Query 669 ACCAAGCGAAATCCGTAGCATACATAAGCCTAAGAATATCCCTTATGCATCAAAGGGAAA 728
||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||
Sbjct 537 ACCAAGCGAAATCCGTAGCATACCGAAGCCGAAGAATATCCCTTGTGAATCAAAGGGAAA 596
Query 729 AGCCGAGTTTACATCGGTTAAATCACCTCTTTACCCGTTTGCGAAATCGACAATTCCAAA 788
|| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 597 TGCAGAGTTCACATCGGTTAAATCACCTCTTTATCCGTTTGCAAAATCGACAATCCCAAA 656
Query 789 AGACGAAGAATTGACGCCAAGAGTCCTCGGTTTAGAGAAGAACATTGCGGTTTCAAGAAG 848
||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 657 AGACGAAGAATTGACACCAAGAGTCCTCGATTTAGAGAGGAAAATTGCGGTTTCAAGAAG 716
Query 849 CGTATTCAGCGCGATGCTCGCTCTAGTGGTGGGTATAGTAATGTATGAAGCCAAAGAACA 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTATTCAGCGCGATGCTCGCTCTAGTGGTGGGTATAGTAATGTATGAAGCCAAAGAACA 776
Query 909 AGAGCTGTGTACTCCACTTATAGGAGCACTCTTCACAGTGGTTGGTATCTCTTTGAA-AA 967
||||||||| ||||||||| |||||||||||||||| ||||||||||||||| | || ||
Sbjct 777 AGAGCTGTGCACTCCACTTTTAGGAGCACTCTTCACTGTGGTTGGTATCTCTCT-AAGAA 835
Query 968 GTGTGGTTCAATTTTTCTCTACGGTTAAGAATAAACCGGCTTTAGATGCAGTTGCTCTTA 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 GTGTGGTTCAATTTTTCTCTACGGTTAAGAATAAACCGGCTTTAGATGCAGTTGCTCTCA 895
Query 1028 TGAGTCTCAACTGGTTTATCGTTGGTACTCTTACTTACCCGACTCTACCAAGAGTTGCTC 1087
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 896 TGAGTCTCAATTGGTTTATCGTCGGTACTCTTACCTACCCGACTCTACCAAGAGTTGCTC 955
Query 1088 GAATTGTGGTCCCACGAGTCTTTAACACCGTCGGCTCGGTCTTCGCTTTGCTCCATGGTG 1147
||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||
Sbjct 956 GAATTGTGGTCCCGCGAGTCGTTAGCACTGTTGGCTCGGTCTTCGCTTTGCTCCATGGTG 1015
Query 1148 GCTCACTCCCCT-CGCCACCAGAGTTTGTGAACTATGTTGGTTAA 1191
||||| |||| | || ||| ||| |||| ||||||| | |||||
Sbjct 1016 GCTCAGTCCC-TGCGTCACTGGAGCTTGTTAACTATGCTAGTTAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5