BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45320.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948461 jgi|Araly1|948461|scaffold_800348.1 1002 0.0
Ahg915582 jgi|Araly1|915582|Al_scaffold_0008_333 933 0.0
> Ahg948461 jgi|Araly1|948461|scaffold_800348.1
Length=640
Score = 1002 bits (542), Expect = 0.0
Identities = 603/632 (95%), Gaps = 5/632 (1%)
Strand=Plus/Plus
Query 105 ACCCCATAATAATGCCCAGATTGACTTCTCGTCATGGT---ACCAGTCCTTTCATCTGGT 161
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 10 ACCCCATAATAATGCCCAGATTGACTTCTCGTCACGGTACCACCAGTCCTCTCATCTGGT 69
Query 162 GTGCAGCCATCATTTGTGCCATAATCTCTATTGTTGTAATCGTTGGTGGCATTATAGTCT 221
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 70 GTGCAGCTATCATTTGTGCTATAATCTCTATTGTTGTAATCATTGGTGGCATTTTAGTCT 129
Query 222 TCGTTGGTTACCTGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCGCGGATGCTCACC 281
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 130 TCGTTGGTTACATGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCACGGATGCTCACC 189
Query 282 TCGACTTCTTAAAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACGATTGTGATTC 341
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 190 TCGACTTCTTAAAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACAATTGTGATTC 249
Query 342 GCGTAGAGAATGATAACGCTAAGGCTCATGCGTTGTTTGATGAAACTGAGTTCAAGCTAA 401
||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 250 GCGTAGACAATCATAACGCTAAGGCTCATGCGTTGTTTGATGAAACCGAGTTCAAGCTAA 309
Query 402 GCTATGAAGGCAAACCTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGA 461
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCTATGATGGGAAACTTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGA 369
Query 462 AATCAATGTTCCTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACAATGA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 AATCAATGTTCCTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACTTTGA 429
Query 522 TGCAAGCTGTAGACTATGCGGTTAAAAAAGATGTTATTACTTTCGAGCTCAAAGGTGGCT 581
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 430 TGCAAGCTGTAGACTATGCGGTTAAACAAGATGTTATTACGTTCGAGCTCAAAGGTGGCT 489
Query 582 C-AAGAACTCGGTGGCGAGTCGGACCATTAGGATCGGTTAAGTTTGAGTGTAACCTTAGC 640
| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 490 CGAA-AACTCGGTGGCGAGTCGGACCATTAGGATCGGTCAAGTTCGAGTGTAACCTTAGC 548
Query 641 TGTCAGCTTAGGTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACCTCTGCT 700
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 549 TGTGAGCTTAGGTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACTTCTTCT 608
Query 701 CATAAGCATTAGAAACTCTATCTCTCAtttgt 732
||||||||||||||||||||||||||||||||
Sbjct 609 CATAAGCATTAGAAACTCTATCTCTCATTTGT 640
> Ahg915582 jgi|Araly1|915582|Al_scaffold_0008_333
Length=600
Score = 933 bits (505), Expect = 0.0
Identities = 570/601 (95%), Gaps = 5/601 (1%)
Strand=Plus/Plus
Query 116 ATGCCCAGATTGACTTCTCGTCATGGT---ACCAGTCCTTTCATCTGGTGTGCAGCCATC 172
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||
Sbjct 1 ATGCCCAGATTGACTTCTCGTCACGGTACCACCAGTCCTCTCATCTGGTGTGCAGCTATC 60
Query 173 ATTTGTGCCATAATCTCTATTGTTGTAATCGTTGGTGGCATTATAGTCTTCGTTGGTTAC 232
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 61 ATTTGTGCTATAATCTCTATTGTTGTAATCATTGGTGGCATTTTAGTCTTCGTTGGTTAC 120
Query 233 CTGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCGCGGATGCTCACCTCGACTTCTTA 292
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ATGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCACGGATGCTCACCTCGACTTCTTA 180
Query 293 AAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACGATTGTGATTCGCGTAGAGAAT 352
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 AAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACAATTGTGATTCGCGTAGACAAT 240
Query 353 GATAACGCTAAGGCTCATGCGTTGTTTGATGAAACTGAGTTCAAGCTAAGCTATGAAGGC 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 CATAACGCTAAGGCTCATGCGTTGTTTGATGAAACCGAGTTCAAGCTAAGCTATGATGGG 300
Query 413 AAACCTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGAAATCAATGTTC 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACTTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGAAATCAATGTTC 360
Query 473 CTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACAATGATGCAAGCTGTA 532
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACTTTGATGCAAGCTGTA 420
Query 533 GACTATGCGGTTAAAAAAGATGTTATTACTTTCGAGCTCAAAGGTGGCTC-AAGAACTCG 591
||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 421 GACTATGCGGTTAAACAAGATGTTATTACGTTCGAGCTCAAAGGTGGCTCGAA-AACTCG 479
Query 592 GTGGCGAGTCGGACCATTAGGATCGGTTAAGTTTGAGTGTAACCTTAGCTGTCAGCTTAG 651
||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 480 GTGGCGAGTCGGACCATTAGGATCGGTCAAGTTCGAGTGTAACCTTAGCTGTGAGCTTAA 539
Query 652 GTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACCTCTGCTCATAAGCATTA 711
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 540 GTTTAGACCTTCTGATCATAGTTACATTCCATCTCCGTGCACTTCTTCTCATAAGCATTA 599
Query 712 G 712
|
Sbjct 600 G 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5