BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45330.1
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948460 jgi|Araly1|948460|scaffold_800347.1 2593 0.0
> Ahg948460 jgi|Araly1|948460|scaffold_800347.1
Length=1754
Score = 2593 bits (1404), Expect = 0.0
Identities = 1653/1770 (93%), Gaps = 30/1770 (2%)
Strand=Plus/Plus
Query 110 CACTGATTAATCTC-AAAAAATGGCGAGTGAGAGTTCGCAATCTTCCTCGCCGTCGTCAT 168
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 CACTGATTAATCTCTAAAAAATGGCGAGTGAGAGTTCGCTATCTTCCTCTCCGTCGTCAT 60
Query 169 CTCAACCTCCGTCATCTGTACCTTCTCCGTCGCCGGGTAACAACGTCGGCGATACGTTTA 228
||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 CTCAACCCCCGTCATCTTTACCTTCTCCGTCGCCGGGAAACAACGTCGGAGATACGTTTA 120
Query 229 TAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGGAAGTTTCATCAGTCTAATTTCTAAGTACGAGATCCGTTACGAAGGCATTCTCTACC 180
Query 289 ATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGTAAGATCATGTGGAACGGAGG 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATCTCAACGTTCAGGACTCGACGCTAGGTCTAAAAAACGTAAGATCATGTGGAACGGAAG 240
Query 349 GGAGGAAGAAAGATGGGCCGCAAATTCCGCCATGTGATAAAGTTTACGATTACATTCTTT 408
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 241 GGAGGAAGAAAGATGGGCCGCAAATTCCGCCGTGTGATAGAGTTTACGATTACATTCTTT 300
Query 409 TTCGTGGAAGTGACATCAAGGATCTCCAAGTTAACCCATCTCCATCTGCTCAATCAAGAC 468
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 301 TTCGCGGAAGTGACATTAAGGATCTGCAAGTTAACCCATCTCCATCTGCTCAATCAAAAC 360
Query 469 AAGAGATTCAAAGTGAACAAGACGTCAATCAGTCCCCTCACTCTAGGCCAGCTATGACTA 528
| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 361 AGGAGATTCAAAGTGAACAAGACATCACTCAGTCCTCTCACTCTAGGCCAGCTATGACTA 420
Query 529 TGAGCTCTCCGATTTCTGGCTATGATAGCGGTTATGGTTTGGGGAGAGGATCACAATGGA 588
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAGCTCTCCAATTTCTGGCTATGATAGCGGTTATGGTTTGGGGAGAGGATCACAATGGA 480
Query 589 TCAATACACCTGCTTTGAGTAGTAAACCGGTTCCTGTCACACAACATTCATCAGTCCCTT 648
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TCAATACACCTGCTTTGAGTAGTAAACCGGTTCCTTTCACACAACATTCATCAGTCCCTT 540
Query 649 TAAGCTTCCAGCCTCCTTC---AGCTAATGCTGGAAGTTTGACAGAATCACCAGTGAGCT 705
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 541 TAAGTTTCCAGCCTCCTTCTTCAGCTAATGCTGGAAGTTTGACAGATTCACCAGTGAGCT 600
Query 706 TAATTGATTCAACTCAAAGTAATGCTGGTTCCTCGATGCCCATTCCTTCTTTTGTGCAAG 765
|||||| ||||||||||||||||| ||||||||| ||||| || ||||||||||||||||
Sbjct 601 TAATTGGTTCAACTCAAAGTAATGTTGGTTCCTCTATGCCTATGCCTTCTTTTGTGCAAG 660
Query 766 GTAACAAATTTGCTTCCAGTGGTGTCCCTCTTGGTATGATGCAGAAGCCAGTTTCATCCT 825
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GTAACAAATTAGCTTCCACTGGTGTCCCTCTTGGTATGATGCAGCAGCCAGTTTCATCCT 720
Query 826 CCTCGACCATACCCAATGGTCCGCAGATTATTGATTATTTTTCTTCACCAATCATGGG-G 884
|||||||| ||||||||| ||| |||||||| ||||||||| |||||||||||||||| |
Sbjct 721 CCTCGACCGTACCCAATGATCCACAGATTATAGATTATTTTGCTTCACCAATCATGGGAG 780
Query 885 TTAGTGGATGATTCATCACAGGTTGTTACTCGTTCACCTGACGTCT-CTTCCAATCAATC 943
| |||| |||||||| ||||||||||||||||||||||||| || | ||| |||| |||
Sbjct 781 T-AGTGAATGATTCAACACAGGTTGTTACTCGTTCACCTGATGT-TGCTTATAATCGATC 838
Query 944 ATACTCTTCCAACCCTTCTCCTCTTGGTCAAACACAACTCCATACTCCACCTGGCCTTGC 1003
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 839 GTACTCTTCCAACCCTTCTCCCCTTGGTCAAGCACAACTCCATACTCCACCTGGCCTTGC 898
Query 1004 TTCAGTATCCTCTAACCTTTCTCCACCTTCTGAAGCGCAGCTTTCTGCTCCAAATATTCA 1063
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 TTCAGCACCCTCTAACCTTTCTCCACCTTCTGAACCGCAGCTTTCTGCTCCAAATATTCA 958
Query 1064 GAAAATTTACCCCAGTGCACCCCAGGCTATTGGTAAAGTTGTCTATGACCCTCAGTCTAA 1123
||| | |||||||||||| ||||||||| |||||||||||||||||||| |||||||| |
Sbjct 959 GAACAGTTACCCCAGTGCGCCCCAGGCTGTTGGTAAAGTTGTCTATGACTCTCAGTCTGA 1018
Query 1124 TCATCCTCACCGATCTATACCTCATGAGTTACCTGCTGTGGCTTCTAATTCAGCTCCTGT 1183
|||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 1019 TCATCCAAACCGATCTATACCTTATGAGTTACCTGCTGTGGCTTCCAATTCATCTCCTGT 1078
Query 1184 GATTCCTGGTCCATTGTCAAAATCGCCTGAGTCATTTTTCGATATGGATCCGTCACTGCA 1243
||||||||||||||||| || |||||||||||||| |||| |||| |||||| || |||
Sbjct 1079 GATTCCTGGTCCATTGTGGAAGTCGCCTGAGTCATTCTTCGGTATGAATCCGTTACCGCA 1138
Query 1244 ATCTAGGCAGCAGATGGTATATAGGGGTCAAGAGATGTTTGCTGCAACTAACCCGGCATC 1303
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1139 ATCTAGGCAGCAGATGGTATATAGGGGTCAAGAGATGTTTGCA-C--CTAACCCGGTATC 1195
Query 1304 AGCGAATGTGCCATCACAAAGTTTTGCTCCCAGAAATCATGCACCATTGCTGCCTCTTCC 1363
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1196 AGCGAATGTGCCATCACAAAGTTTTGCTACCAGAAATCATGCACCGTTGCTGCCTCTTCC 1255
Query 1364 AGTTTCAGCTCATCAGTCTCGGATCCCTAGTTCTAGCATTGAGTACACTGAAGAATTTGA 1423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGTTTCTGCTCATCAGTCTCGGATCCCTAGTTCTAGCATTGAGTACACTGAAGAATTTGA 1315
Query 1424 TTTTGAAGCAATGAATGAGAAGTTCAAGAAGAGTGAACTATGGGGTTATCTTGG-AAGAA 1482
||| || |||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1316 TTTCGAGGCAATGAATGAGAAGTTCAATAAGAGTGAACTATGGGGTTATCTTGGGAA-AA 1374
Query 1483 ATAACCAGAGGAATCAAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAG 1542
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1375 ATAACCAGAGAAATCAAAATGATTACGGGGAAGAAACTGCAATTGAGCCAAACGCAGAAG 1434
Query 1543 GGAA------GCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAAC 1596
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1435 GGAACATACAGCCTGCATATAACAAGGATGACTTTTTCGACACAATCTCATGCAATCCAC 1494
Query 1597 TTGACCGTGTGGCAAGAAGCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAG 1656
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1495 TTGACCGTGTGGCAAGAAGCGGACAACAGCACACCCAGTTTCCCGAGCACATGAGACAAG 1554
Query 1657 TTCCTGAGGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGTG 1716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TTCCTGAGGCATTTGCTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGTG 1614
Query 1717 CATATCTCGCTGCACAAACCAATTACAGAGGCGGATACCATAATAACAACAACAACAACT 1776
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 1615 CATATCTCGCTGCACAAACCAATTACAGAGGCGGATACCACAATAACAACTAC------T 1668
Query 1777 ACTACTCAAACTCGGGTTATGGTTACTACTCTGGTGGGAGAGGCCGAGGCAGAAACACAC 1836
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 A-TGC--AAACTCGGGTTATGGTTACTACTCTGGTGGGAGAGGCCGAGGCAGAAACACAC 1725
Query 1837 ATTTCTGACCTGCTGAGTT-TCTATCTTCC 1865
||||||||||||||| ||| | | ||||||
Sbjct 1726 ATTTCTGACCTGCTGCGTTAT-TGTCTTCC 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5