BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45340.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326 2261 0.0
Ahg492925 jgi|Araly1|492925|fgenesh2_kg.7__2358__AT4G19230.2 1242 0.0
> Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326
Length=1392
Score = 2261 bits (1224), Expect = 0.0
Identities = 1339/1395 (96%), Gaps = 6/1395 (0%)
Strand=Plus/Plus
Query 83 ATGGATTTCTCCGGTTTGTTTCTCACTCTCTCCGCGGCGGCTCTGTTTCTCTGTTTACTC 142
||||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct 1 ATGGATTTCTCCGATTTGTTTCTCACTCTCTTTGCGGTGGCTCTGTTTCTTTGTTTACTC 60
Query 143 CGATTTATCGCCGGAGTCCGCCGTAGCTCCTCCACGAAACTCCCTCTTCCTCCGGGAACA 202
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CGATTTATCGCCGGAATCCGCCGTAGCTCCTCCACGAATCTCCCTCTTCCTCCGGGAACA 120
Query 203 ATGGGTTATCCTTACGTCGGCGAAACATTCCAACTTTACTCACAAGACCCTAATGTGTTC 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGGTTATCCTTACGTCGGCGAAACATTCCAACTTTACTCACAAGACCCTAATGTGTTC 180
Query 263 TTTGCAGCAAAACAGAGAAGATACGGATCGGTGTTCAAGACTCATGTATTGGGATGTCCA 322
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGCAGCAAAACAGAGAAGATACGGATCGGTGTTCAAGACTCATGTATTGGGATGTCCA 240
Query 323 TGTGTGATGATCTCGAGCCCTGAAGCAGCGAAATTCGTATTGGTTACAAAGTCTCATTTG 382
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 241 TGTGTGATGATCTCAAGCCCTGAAGCAGCGAAATTTGTATTGGTTACCAAGTCTCATTTG 300
Query 383 TTTAAACCGACTTTTCCGGCCAGTAAAGAGAGGATGCTTGGAAAACAAGCCATCTTCTTC 442
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 301 TTTAAACCGACTTTTCCGGCGAGTAAAGAGAGGATGCTTGGAAAACAAGCAATCTTTTTC 360
Query 443 CATCAAGGAGATTATCATTCCAAACTTAGAAAGCTTGTTTTAAGAGCTTTCATGCCTGAT 502
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 361 CACCAAGGAGATTATCATTCCAAACTTAGAAAGCTAGTTTTAAGAGCCTTCATGCCTGAT 420
Query 503 GCAATCAGAAACATGGTCCCTCACATTGAATCAATTGCTCAAGAATCACTCAATTCTTGG 562
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GCAATCAGAAACATGGTCCCTCACATTGAATCAATCGCTCAAGAATCACTCAATTCTTGG 480
Query 563 GATGGAACTCAACTCAACACTTACCAGGAAATGAAAACATACACTTTCAATGTTGCGTTA 622
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 481 GATGGAACTCAACTCAACACTTACCAAGAAATGAAAACATACACTTTCAATGTGGCGTTG 540
Query 623 ATCTCAATACTCGGCAAAGACGAAGTTTAT-TACCGAGAAGATCTAAAACGATGCTACTA 681
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 541 ATCTCAATACTCGGCAAAGACGAAGTTT-TCTACCGAGAAGATCTAAAACGATGCTACTA 599
Query 682 CATTCTAGAGAAAGGTTACAATTCGATGCCGATTAATCTTCCAGGAACATTATTCCACAA 741
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 600 CATTCTAGAGAAAGGTTACAATTCGATGCCGATTAATCTCCCCGGAACACTATTCCACAA 659
Query 742 AGCCATGAAAGCTCGCAAGGAGCTAGCTCAAATCCTCGCTAACATCTTATCCAAAAGAAG 801
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCCATGAAAGCTCGTAAGGAGCTAGCTCAAATCCTCGCTAACATCTTATCCAAAAGAAG 719
Query 802 ACAAAACCCATCATCACACACAGATCTCCTCGGATCATTCATGGAAGACAAAGCAGGATT 861
||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 720 ACAAAACTCATCTTCACACACAGATCTTCTCGGATCATTCATGGAAGACAAAGAAGGATT 779
Query 862 AACCGACGAACAAATCGCC-GATAACATCATC-GGAGTAATCTTCGCCGCAAGAGACACG 919
|| |||||||||||||||| | ||| || | ||| | ||||||||||| |||||||||
Sbjct 780 AAGCGACGAACAAATCGCCTCTTCACA-CA-CAGGATTTATCTTCGCCGCTAGAGACACG 837
Query 920 ACGGCGAGTGTTCTGACGTGGATCCTCAAGTACTTAGCTGATAATCCAACTGTTCTAGAA 979
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACGGCGAGTGTGCTGACGTGGATCCTCAAGTACTTAGCTGATAATCCAACTGTTCTAGAA 897
Query 980 GCTGTCACTGAAGAGCAAATGGCAATAAGGAAAGATAAAAAAGAAGGAGAGAGTCTCACT 1039
| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAAAAAAAGAAGAGCAAATGGCAATAAGGAAAGATAAAAAAGAAGGAGAGAGTCTCACT 957
Query 1040 TGGGAAGATACAAAGAAGATGCCATTAACTTATAGAGTAATCCAAGAGACATTAAGAGCT 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGGAAGATACAAAGAAGATGCCATTAACTTATAGAGTAATCCAAGAGACATTAAGAGCT 1017
Query 1100 GCTACAATCTTATCTTTCACATTTAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTACAATCTTATCTTTCACATTTAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATAT 1077
Query 1160 TTGATACCAAAGGGATGGAAAGTACTGCCACTATTCAGAAATATTCATCACAATGCTGAT 1219
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1078 TTGATACCAAAGGGATGGAAAGTATTGCCGCTATTCAGAAATATTCATCACAATGCTGAT 1137
Query 1220 ATATTTTCGGATCCGGGGAAATTCGATCCGTCGAGATTCGAAGTTGCGCCGAAACCGAAT 1279
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATATTTTCGGATCCGGGAAAATTCGATCCGTCGAGATTCGAAGTTGCGCCGAAACCGAAT 1197
Query 1280 ACATTCATGCCTTTTGGTAGTGGGATTCATTCTTGTCCAGGCAATGAGTTAGCTAAACTT 1339
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACATTCATGCCTTTTGGAAGTGGGATTCATTCTTGTCCAGGCAATGAGTTAGCTAAACTT 1257
Query 1340 GAAATCTCTGTTCTAATCCATCATCTCACCACTAAGTACAGATGGTCAATCGTAGGGCCT 1399
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1258 GAAATCTCTGTTCTAATCCATCATCTCACCACTAAGTACAGATGGTCAATTGTAGGACCT 1317
Query 1400 AGCGATGGAATTCAGTATGGGCCGTTCGCTCTTCCTCAGAATGGATTGCCTATTGCCTTG 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGCGATGGAATTCAGTATGGGCCGTTCGCTCTTCCTCAGAATGGATTGCCTATTGCCTTG 1377
Query 1460 GAACGAAAACCATAG 1474
|||||||||||||||
Sbjct 1378 GAACGAAAACCATAG 1392
> Ahg492925 jgi|Araly1|492925|fgenesh2_kg.7__2358__AT4G19230.2
Length=1909
Score = 1242 bits (672), Expect = 0.0
Identities = 1173/1407 (83%), Gaps = 66/1407 (5%)
Strand=Plus/Plus
Query 82 AATGGATTTCTCCGGTTTGTTTCTCACTCT-CTCCG-CGGCGGCTCTGTTTCTCT-GTTT 138
|||||||||||||| |||||||||||||| || || ||| | ||| || || | |||
Sbjct 155 AATGGATTTCTCCGCCTTGTTTCTCACTCTCCT-CGCCGGAAG-TCTCTTCCTTTACTTT 212
Query 139 ACTCCGAT-T-T-ATCGC-CGGAGTCCGCCGTAGCTCCTCCACGAAACTCCCTCTTCCTC 194
||||| | | | ||| | | | | ||||| | | | || | | |||||||| || ||||
Sbjct 213 -CTCCGGTGTCTAATCTCTCAGCG-CCGCCTTGGAT-CTTC-C-AAACTCCCACTCCCTC 267
Query 195 CGGGAACAATGGGTTATCCTTACGTCGGCGAAACATTCCAACTTTACTCACAAGACCCTA 254
||||||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 268 CGGGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTATTCTCAAGACCCAA 327
Query 255 ATGTGTTCTTTGC-AGCAAAACAGAGAAGATACGGATCGGTGTTCAAGACTCATGTATTG 313
|||| || ||| | | ||||||| ||||| || ||||||||||| ||||| |||||||||
Sbjct 328 ATGTCTT-TTTCCAAACAAAACAAAGAAGGTATGGATCGGTGTTTAAGACCCATGTATTG 386
Query 314 GGATGTCCATGTGTGATGATCTCGAGCCCTGAAGCAGCGAAATTCGTATTGGTTAC-AAA 372
|||||||||||||||||||||||||| || ||||| || || ||||| |||| || |||
Sbjct 387 GGATGTCCATGTGTGATGATCTCGAGTCCAGAAGCTGCCAAGTTCGTGCTGGTGACGAAA 446
Query 373 GTCTCATTTGTTTAAACCGACTTTTCCGGCCAGTAAAGAGAGGATGCTTGGA-AAACAAG 431
|||||| | |||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 447 -TCTCATCTCTTTAAACCGACTTTTCCGGCGAGTAAAGAGAGGATG-TTGGGGAAACAAG 504
Query 432 CCATCTTCTTCCATCAAGGAGATTATCATTCCAAACTTAGAAAGCTTGTT-TTAAGAGCT 490
||||||||||||| ||||| ||||| || | ||||| || ||||||||| || | |||
Sbjct 505 CCATCTTCTTCCACCAAGGTGATTACCACGCTAAACTCAGGAAGCTTGTTCTTC-GTGCT 563
Query 491 TTCATGCCTGATGCAATCAGAAACATGGTCCCTCACATTGAATCAATTGCTCAAGAATCA 550
||||||||||| || |||||||||||||| ||| | || |||||||| |||||||| ||
Sbjct 564 TTCATGCCTGAAGCTATCAGAAACATGGTTCCTGATATCGAATCAATCGCTCAAGATTCT 623
Query 551 CTC--AATTCTTGGGATGGAAC--TCAACTCAACACTTACCAGGAAATGAAAACATACAC 606
||| |||| | |||| ||||| | | ||||||||||||| |||||||||||||||||
Sbjct 624 CTCCGAATT-T-GGGAAGGAACAATGA--TCAACACTTACCAAGAAATGAAAACATACAC 679
Query 607 TTTCAATGTTGCGTTAATCTCAATACT-CGGCAAAGACGAAGTTT-ATTACCGAGAAGAT 664
||||| |||||||| |||| || || ||| |||||||| |||| || || ||||||||
Sbjct 680 CTTCAACGTTGCGTTGCTCTCGAT-CTTCGGAAAAGACGAGGTTTTAT-ACAGAGAAGAT 737
Query 665 CTAAAACGATGCTACTACATTCTAGAGAAAGGTTACAATTCGATGCCGATT-AATCTTCC 723
||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||
Sbjct 738 CTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAATTCGATGCC-AGTGAATCTCCC 796
Query 724 AGGAACATTATTCCACAAAGCCATGAAAGCTCGCAAGGAGCTAGCTCA-A-ATCCTCGCT 781
|||||| | ||||||||| | |||||||||||||||||||| |||| | |||||||||
Sbjct 797 TGGAACACTCTTCCACAAATCAATGAAAGCTCGCAAGGAGCT--CTCACAGATCCTCGCT 854
Query 782 A-ACATCTTATCCAAA-AGAAGACAAAACCCATCATC-ACACA-CAGATCTCCTCGGATC 837
| | |||||||| | | |||||||| ||| || || ||||| | ||||| ||||||||
Sbjct 855 AGA-ATCTTATC-AGAGAGAAGACAGAACGGTTC-TCCACACAAC-GATCTTCTCGGATC 910
Query 838 ATTCATGGAAGACAAAGCAG-GATTAACCGACGAACAAATCGCCGATAACATCATCGGAG 896
|||||||| |||||||| || | |||||||||||||| |||||||| ||||| |||||||
Sbjct 911 ATTCATGGGAGACAAAGAAGAG-TTAACCGACGAACAGATCGCCGACAACATAATCGGAG 969
Query 897 TAATCTTCGCCGCAAGAGACACGACGGCGAGTGTTCTGACGTGGATCCTCAAGTACTTAG 956
| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 970 TGATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGATCCTCAAGTACTTAG 1029
Query 957 CTGATAATCC-AACTGTTCTAGAAGCTGTCACTGAAGAGCAAATGGCAATAAGGAAAGAT 1015
| || ||||| ||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1030 CCGAGAATCCCAAC-GTTCTAGAAGCCGTTACTGAAGAACAAATGGCAATAAGGAAAGAC 1088
Query 1016 AAAAAAGAAGGAGAGAG-TCTCACTTGGGAAGATACAAAGAAGATGCCATTAACTT-ATA 1073
||| ||||||||||| | ||| || |||| |||||||||||||||||||||||||| | |
Sbjct 1089 AAAGAAGAAGGAGAG-GCTCTAACCTGGGGAGATACAAAGAAGATGCCATTAACTTCA-A 1146
Query 1074 GAGTAATCCAAGAGACATTAAGAG-CTGCTACAATCTTATCTTTCACATTTAGAGAAGCT 1132
|||| || ||||| |||||||||| | ||| ||||||||||||||||||| |||||||||
Sbjct 1147 GAGTTATTCAAGAAACATTAAGAGTC-GCTTCAATCTTATCTTTCACATTCAGAGAAGCT 1205
Query 1133 GTCGAAGATGTCGAATACGAAGGATATTTGATACC-AAAGGGATGGAAAGTACTGCCACT 1191
||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | || ||
Sbjct 1206 GTCGAAGATGTCGAATACGAAGGTTATTTGATACCTAAAGG-ATGGAAAGTGTTACCGCT 1264
Query 1192 ATTCAGAAATATTCATCACAATGCTGATATATTTTCGGATCCGGGGAAATTCGATCCGTC 1251
|||||||| |||||||| | ||||||||| ||||| ||||||||||||| ||||| ||
Sbjct 1265 TTTCAGAAACATTCATCATAGTGCTGATATTTTTTCAAATCCGGGGAAATTTGATCCATC 1324
Query 1252 GAGATTCGAAGTTGCGCCGAAACCGAATACATTCATGCCTTTTGGTAGTGGGATTCATTC 1311
|||||||| || || || ||||| ||||| |||||||| ||||| | ||| | || ||
Sbjct 1325 AAGATTCGAGGTGGCTCCAAAACCCAATACTTTCATGCCATTTGGCAATGGAACCCACTC 1384
Query 1312 TTGTCCAGGCAATGAGTTAGCTAAA-CTTGAAATCTCTGTTCTAATCCATCATCTCACCA 1370
||||| || ||||| ||||| ||| ||||| || ||| || | || |||||||||||||
Sbjct 1385 GTGTCCTGGAAATGAATTAGC-AAAGCTTGAGATGTCTATTATGATTCATCATCTCACCA 1443
Query 1371 CTAAGTACAGAT--GGTCAATCGTAGG-GCCTAGCGATGGAATTCAGTATGGGCCGTTCG 1427
| |||||||| | ||||||| || || | ||||| || |||||||||||||| ||||
Sbjct 1444 CCAAGTACAGGTTTGGTCAATTGTTGGAGAG-AGCGACGGGATTCAGTATGGGCCATTCG 1502
Query 1428 CTCTTCCTCAGAATGGATTGCCTATTG 1454
| ||||| || || ||| |||| ||||
Sbjct 1503 CGCTTCCCCAAAACGGACTGCCCATTG 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5