BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45350.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494446 jgi|Araly1|494446|fgenesh2_kg.8__262__AT5G45350.1 1232 0.0
Ahg946251 jgi|Araly1|946251|scaffold_702480.1 147 2e-34
Ahg952238 jgi|Araly1|952238|scaffold_48600002.1 135 4e-31
> Ahg494446 jgi|Araly1|494446|fgenesh2_kg.8__262__AT5G45350.1
Length=875
Score = 1232 bits (667), Expect = 0.0
Identities = 816/883 (92%), Gaps = 30/883 (3%)
Strand=Plus/Plus
Query 1 CTCTTCCAATTTCGTTTCGACATATTTCGCGATTC--GTCTAAGGTTTTGTTACTGATTG 58
|||| ||||||| |||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1 CTCTACCAATTTTGTTTCGACATATTTCGCGATTCGTGTCTTAGGTTTTGTTGCTGATTG 60
Query 59 AGAAAACATGGGAGGTGACAATGATAATGACAAAGACAAAGGGTTTCATGGGTATCCTCC 118
|||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||
Sbjct 61 AGAAAACATGGGAGGTGATAATGACAATGACAAAGGCAAAGGGTTTCAAGGGTATCCTCC 120
Query 119 CGCTGGATACCCACC---CCCTGGGGCTTATCCACCCGCTGGATACCCACAACAAGGTTA 175
|||||||||||| || | |||||||| ||| || |||||||| ||||||||||||||
Sbjct 121 CGCTGGATACCCGCCGGGTCTTGGGGCTTCTCCGCCTGCTGGATATCCACAACAAGGTTA 180
Query 176 CCCTCCACCACCCGGTGCTTACCCGCCTGCAGGTTATCCTCCGGGTGCCTACCCACCTGC 235
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CCCTCCACCACCTGGTGCTTACCCGCCTGCAGGTTATCCTCCGGGTGCATACCCACCTGC 240
Query 236 TCCTGGTGGTTATCCTCCCGCCCCTGGTTATGGTGGTTATCCTCCAGCTCCTGGTTATGG 295
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCTGGTGGTTATCCTCCAGCCCCTGGTTATGGTGGTTATCCTCCAGCTCCTGGTTATGG 300
Query 296 AGGTTATCCTCCTGCACCTGGTCATGGTGGTTACCCTCCTGCTGGCTATCCTGCTCATCA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AGGTTATCCTCCTGCACCTGGTCATGGTGGTTACCCTCCTGCTGGCTATCCTGCTAATCA 360
Query 356 CTCAGGACACGCAGGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCAGGACACGCAGGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGC 420
Query 416 TCACCACGTAGCTCATAGCTCTCACGGTCCTTACGGACATGCTGCATATGGTCACGGTTT 475
||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 421 TCACCACATAGCTCATAGCTCTCACGCCCCTTACGGACATGCTGCATACGGTCACGGCTT 480
Query 476 TGGCCATGGTCATGGCTATGGCTATGGTCATGGTCATGGTAAGTTCAAGCATGGGAAGCA 535
||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 481 TGGCCATGGACATGGCTATGGCTATGGTCATGGT-A----A-GTTCAAGCATGGGAAGCA 534
Query 536 CGGGAAGTTCAAGCATGGGAAGCATGGAATGTTTGGAGGAGGCAAGTTCAAGAAGTGGAA 595
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 535 CGGGAAGTTCAAGCATGGGAAGCATGGGATGCTTGGAGGAGGCAAGTTCAAGAAGTGGAA 594
Query 596 GTGATCTAGTTAATACCTTTTGTGAATCTGTCTGGACTGACCAATGTTTCAAATAAGCCC 655
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 GTGATCTAGTTAATACCTTTTGTGAATCTCTCTGGACTGACCAATGTTTCAAATAAGCCC 654
Query 656 TAAA-CATTAT-ATA-A-GTTGACTTTCGTCGGTTAGATTGCTGGTTCGAGTTGGAATAA 711
|||| |||||| ||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 655 TAAAACATTATTATATAAGTTGGCTTTCGTCGGTTAGATTGCTGGTTCGAGTTGGAATAA 714
Query 712 TTGAAACTTAATTAGTA-TCA--A-ATCTTATTGTGTACTTTAAAGCTATCGTTGGCTTT 767
|| |||||||||||||| | | | ||||||||||||||||| |||||||| ||||||||
Sbjct 715 TT-AAACTTAATTAGTAGT-ATGATATCTTATTGTGTACTTTGAAGCTATCTTTGGCTTT 772
Query 768 ATAATGACAGATTCTG--G-TTTCGGTGTGTTGTTTTA-AGATTTTT--GTATATA--CT 819
|||||||||||||||| | ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 773 ATAATGACAGATTCTGCTGGTTTCGGTGTGTGGTTTTTGAGATTTTTTTGTATATATACT 832
Query 820 GTTTTTTAC-ATTGCTTAAGCTTATAGAAGTCATGATTATGAT 861
| |||||| ||||||||||||||| |||||||||||||||||
Sbjct 833 GATTTTTAATATTGCTTAAGCTTATGGAAGTCATGATTATGAT 875
> Ahg946251 jgi|Araly1|946251|scaffold_702480.1
Length=564
Score = 147 bits (79), Expect = 2e-34
Identities = 209/267 (78%), Gaps = 28/267 (10%)
Strand=Plus/Plus
Query 321 GGTGGTTACCCTCCTGCTGGCTATCCTG---CT-CA--TCA-C--TCAGGACACGC-A-- 368
|||||||| ||||||||||||||||||| || | ||| | |||||||| | |
Sbjct 213 GGTGGTTATCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTAGT 272
Query 369 GGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGCTCACCACGTAGCT 428
|| ||||| || || ||||| ||||| |||||||| ||||||||||||||||| || | |
Sbjct 273 GGTGGAATCGGAGGCATGATAGCAGGGGCTGCAGCAGCCTATGGAGCTCACCATGTTGGT 332
Query 429 CATAG-CTCTCACGGTCCTTACGGACATGC--T-GCATATGGTCACGGTTTTGGCCATGG 484
||| | ||||||| |||||||| ||||| | | | |||| | || | |||||||||
Sbjct 333 CAT-GCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGG--A-GGGTATGGCCATGG 388
Query 485 TCATGGCT-ATGGC--T-ATGGTCATGGTCATGGTAAGTTCAAGCATGGGAAGCACGG-G 539
| | ||| ||||| | |||||||||||||||||||||||||||||| ||||| || |
Sbjct 389 CCCT-GCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAG 447
Query 540 --AAGTTCAAGCATGGGAAGCATGGAA 564
|| |||||||| || ||||||||||
Sbjct 448 GCAAATTCAAGCACGGAAAGCATGGAA 474
> Ahg952238 jgi|Araly1|952238|scaffold_48600002.1
Length=280
Score = 135 bits (73), Expect = 4e-31
Identities = 163/204 (80%), Gaps = 16/204 (8%)
Strand=Plus/Minus
Query 372 GGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGCTCACCACGTAGCTCAT 431
||||| || || ||||| ||||| |||||||| ||||||||||||||||| || | ||||
Sbjct 242 GGAATCGGAGGCATGATAGCAGGGGCTGCAGCAGCCTATGGAGCTCACCATGTTGGTCAT 183
Query 432 AG-CTCTCACGGTCCTTACGGACATGC--T-GCATATGGTCACGGTTTTGGCCATGGTCA 487
| ||||||| |||||||| ||||| | | | |||| | || | ||||||||| |
Sbjct 182 -GCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGG--A-GGGTATGGCCATGGCCC 127
Query 488 TGGCT-ATGGC--T-ATGGTCATGGTCATGGTAAGTTCAAGCATGGGAAGCACGG-G--A 540
| ||| ||||| | |||||||||||||||||||||||||||||| ||||| || | |
Sbjct 126 T-GCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAGGCA 68
Query 541 AGTTCAAGCATGGGAAGCATGGAA 564
| |||||||| || ||||||||||
Sbjct 67 AATTCAAGCACGGAAAGCATGGAA 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5