BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45360.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494445 jgi|Araly1|494445|fgenesh2_kg.8__261__AT5G45360.1 1724 0.0
> Ahg494445 jgi|Araly1|494445|fgenesh2_kg.8__261__AT5G45360.1
Length=1138
Score = 1724 bits (933), Expect = 0.0
Identities = 1074/1142 (94%), Gaps = 10/1142 (1%)
Strand=Plus/Plus
Query 1 ACGCCACCGATTCCAAACGCCAACCCTCTCGAGTCT-TGTCTCTCTCCAATCCTTTCCTT 59
|||||||||||||| | ||||||||||||| |||| | |||||||| ||||| ||||||
Sbjct 1 ACGCCACCGATTCCCATCGCCAACCCTCTC--GTCTCTCTCTCTCTCTAATCCCTTCCTT 58
Query 60 GGCCGCATAAACGCAACCATCGTCGTCGGAGCTTTGATCTTCACCGACTGAA-AAGTATG 118
|||||||||||| |||||||||||| | |||||||||||||||||||||||| ||| |||
Sbjct 59 GGCCGCATAAACACAACCATCGTCGCCCGAGCTTTGATCTTCACCGACTGAACAAG-ATG 117
Query 119 TCTGTTTCCGATGAGGAAGATGAGTGTTTCGCTCGATTCCTCGAATCAGAAGTCTCATCG 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTGTTTCCGATGAGGAAGACGAGTGTTTCGCTCGATTCCTCGAATCAGAAGTCTCATCG 177
Query 179 GTAGAGGATAAAGAAGAAACGAAAGAACCTGAGGCAAAACGGCAACGTATTGAGAAAGGC 238
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 178 GTAGAGGATAAAGAAGAAACAAAAGAACCTGAAGCAAAACGGCAACGTATTGAGAAAGCC 237
Query 239 GAAACAAAGGCTCTAGAGAAGGA---TGAAGATCAAAAGGAAAATGGTAACAAAGATAAA 295
||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 238 GAAACAAAGGCTCTAGAGAAGGATGGTGAAGATCAAAAGGAAGATGTTAACAAAGATAGA 297
Query 296 ACTGATGCAAAGAGAATAGAGAGTGGAGTTTTCACCAATGTTCCTACTGAGCTGTTTCGT 355
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 ACTGTTGCAAAGAGAATAGAGAGTGGAGTTTTCAGTAATGTTCCTACTGAGCTGTTTCGT 357
Query 356 CATATTCTCAAGTTCTTATCTTCGGAGGATCTTGTATCATGCTCCTTGGTTTGTAAATTT 415
||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 358 CATATCCTCAAGTTCTTATCTTCTGAGGATCTTGTATCATGCTCCATGGTGTGTAAATTT 417
Query 416 CTCAATTTTGCTGCGGCTGATGAATCCTTATGGCGTCGCCTGTACTGTATCCGGTGGGGT 475
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 418 CTTAATTTTGCTGCGGCTGATGAATCATTATGGCGTCGCCTCTACTGTATCCGGTGGGGT 477
Query 476 CTAACTCTTCCAAGTAGAAAGTTACGTGAATCTGCTTGGAAGAAGCTTTATATTGATCGT 535
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 TTAACTCCTCCAACTAGAAAGTTACGTGAAAGTGCTTGGAAGAAGCTTTATATTGATCGT 537
Query 536 GATGAACAGGACATGATTGAACTTGTCAGAACCTGTCCGTCGGATTTCAAGGAGTATTAC 595
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 538 GACGAGCAGGACATGATTGAACTTGTCAGAACCTGTCCGTCGGATTTTAAAGAGTATTAC 597
Query 596 GTACATATGCAAGCAGCAAAGAGAAGCCAAGCACCTCTTCCGTCCCAGATGGTGGATGAC 655
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGCAAATGCAAGCAGCAAAGAGAAGCCAAGCACCTCTTCCGTCCCAGATGGTGGATGAC 657
Query 656 CGGATAATTCTTGACAATACTGTACTTGAACAAGTTTCTCTATGGAAGAAAAGCAAAGGA 715
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 658 CGGATAATTCTTGACAAAACTGTACTTGAACAAGTATCTCTGTGGAAGAAAAGCAAAGGA 717
Query 716 CTTACTGATAAGGCTGTCACTGGCCATATTTGTTTGGGAACCAAATGTTCATACCATCAG 775
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTACCGATAAGGCTGTCACTGGCCATATTTGTTTGGGAACCAAATGTTCATACCATCAG 777
Query 776 ATTGACGACGTGTTCATATGCAAAGAGACGGGAAATGTTCATGTATGCGATGATAACTGC 835
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 ATTGACGACGTGTTCATATGCAAAGAGACGGGAAATGTTCATGTGTGCGATGATAACTGC 837
Query 836 AAGGAAGTAATACTGAGTCCAGAGGGTGACCTCATGGTGTGTACTATCTCAGGAGTTTGT 895
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 838 AAGGAAGTAATACTGAGTCCAGAGGAAGACCTCATGGTGTGTACTATCTCAGGACTTTGT 897
Query 896 TCTGATACTTTACTTGTACAAACTGAGCCAGACGCAGATGGGTGTTATGAGGAAGAAGCT 955
||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 898 TCTGATACTTTGCTCGTACAAACTGATCCAGACGCAGATGGCTGTTATGAGGAAGAAGCT 957
Query 956 GAACTAGAAGCTGAAGTATTCACAGATAAAAGCCGATTAGCCCGAGCTTTTGAACTTGGC 1015
|||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||
Sbjct 958 GAACTAGAAGCTGAAGTATTCATGGATAAAAGTCGATTGGCAAGAGCTTTTGAACTTGGC 1017
Query 1016 TACAACTGCGATGATGAGCAGGAACTGGAACGTACCCTGAGGTTCTGCTGAGCAAAAGTC 1075
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 TACAACTGTGATGATGAGCAGGAATTGGAACGTACCCTGAGGTTCTGCTGAGCAAAAGTC 1077
Query 1076 TC-GACCTTTTGTCCAATTTCATAAGGCCTACTTTCTGTAAGGTCTtctctctctctctc 1134
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 TCAG-CCTTTTGTCCAATTTCATAAGGCCTACTTTCTGTAAGGTCTTATCTCTCTCTCTC 1136
Query 1135 tc 1136
||
Sbjct 1137 TC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5