BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45370.2
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2 1977 0.0
Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1 826 0.0
> Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2
Length=1319
Score = 1977 bits (1070), Expect = 0.0
Identities = 1198/1259 (95%), Gaps = 12/1259 (1%)
Strand=Plus/Plus
Query 36 TTACAGAGCAAATCAAAGGATCTCAATTTC-T-TTAGTCAACAGGTGTTCCTTCTCTTCT 93
||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 1 TTACAAAGCAAATCAAAGGATCTCAATTTCTTCTTAGTCAACAGGTGTTTCTTCTCTTCT 60
Query 94 TC--C-TCGATTCGGAGGTAGAGAAGAAAAATGGCAGCTCCGGCGATCCTAAACGGCGGC 150
|| | ||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 61 TCTTCTTCGATTCGGAGGTAGAGAAGAAACATGGCAGCTCCGGCGATAGTTAACGGCGGC 120
Query 151 GATGCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATA 180
Query 211 AATGGAGGATACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTT 270
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGGAGGTTACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTC 240
Query 271 TTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGT 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGC 300
Query 331 GAAAGAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTTGGT 390
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GAAAGAAGGATCAGACCTCCTATGAATAGAAGCGTCTTCTTTTCACTCTTCTTTCTTGGT 360
Query 391 TTAGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGTTTATCTTACACGAATCCA 450
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTAGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGTTTATCGTACACGAATCCA 420
Query 451 ACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTG 510
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 421 ACTTATGCCGCAGCTATACAACCATCAATCCCAGTCTTTACATTTCTCTTGGCTGTCATG 480
Query 511 ATGGGTACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAGTTGGAGGTACT 570
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 481 ATGGGTACAGAAAAAGTGAACTTGTTTAAAATCGAGGGCCAAACGAAAGTTGGAGGTACT 540
Query 571 CTTGTTTGTGTTTCGGGTGCTATAGCGATGGCTTTGTTTCGTGGTCCAGCCTTGTTTGGA 630
|||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 541 CTTGTTTGTGTTTCGGGTGCCGTGGCAATGGCTTTGTTCCGTGGTCCAGCCTTGTTTGGA 600
Query 631 GGTAAAGATGCAGCAGATTCAGTGAAAAGTGTAATTATTGATAGAAGTCAACCAGAG-CT 689
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 601 GGTAATGATGCAGTAGATTCAGTGAAAAGTGTAATAATTGATAGAAGTCAACCAGAGAC- 659
Query 690 TAATGGGTGGTTAGTCTCTAGTTTTCTT-GGTCTTGGGTTTGATCAATGGCACATTGGAG 748
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 660 TAATGGGTGGTTAGTCTCTAGTTTTCTTGGGT-TTGGGTTTGATCTATGGCACATTGGAG 718
Query 749 TTTTATGTTTGATTGGAAACTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGCACCGG 808
|| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTATATGCTTGATAGGAAATTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGCACCGG 778
Query 809 TTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGTATTCATACTTCTTCGGTGCAT 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGTATTCATACTTCTTCGGTGCAT 838
Query 869 CAATAATGATCACAACAGCTATCTTGTTTGTTAGAGAGCCTAAAGATTGGAGCTTAACAC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAATAATGATCACAACAGCTATCTTGTTTGTTAGAGAGCCTAAAGATTGGAGCTTAACAC 898
Query 929 AATCTGAGGTTCTTGCTGTTATATTCGCAGGAGTGTTTGCCTCAGCTCTAAACTATGGAC 988
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 AATCTGAAGTTCTTGCTGTTATATTCGCAGGAGTGTTTGCGTCAGCTCTAAACTATGGAC 958
Query 989 TCTTGACTTGGTCCAATAAAATTCTTGGAGCTGCTTTGGTTTCCCTATACAATCCTCTTC 1048
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 TCTTGACTTGGTCGAATAAAATTCTTGGAGCTGCTTTGGTTTCTCTATACAATCCTCTTC 1018
Query 1049 AGCCTGCAACATCGGCCTTTTTATCGACAATTTTCCTCGGCAGCCCGATCTATCTTGGAA 1108
||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1019 AGCCTGCAACATCCGCCTTTTTATCAACGATTTTCCTCGGCAGCCCGATCTATCTCGGAA 1078
Query 1109 GCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTACA 1168
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 GCATTTTGGGCGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTATA 1138
Query 1169 GAGAGCAACAAACAACA-TCAGCTGGGAATGAGATTGCTTCTTCTAGTGATGTAAGAATC 1227
|||| |||||||||||| | | |||||||||||| |||||||||||||| ||||||||||
Sbjct 1139 GAGAACAACAAACAACAGT-ATCTGGGAATGAGACTGCTTCTTCTAGTGGTGTAAGAATC 1197
Query 1228 TCGGAACCTTTCATTTACAGAGATGAGACTGGTAAATAAAT-AAGAAAAGGTAAAGAAA 1285
|| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1198 TCAGAACCTTTGATTTACAGAGATGAGACTGGTAAATAAATTAAGAACAGGTAAAGAAA 1256
Score = 100 bits (54), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1331 ACAAATCATACAATTTTTTCGAGTTCAAACATTGATTCTTTAAACGGTAAATAATTCAAA 1390
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1257 ACAAATCATACAATTTTTTCGAGTTCAAACATTGATTCTATAAACGATAAACAATTCAAA 1316
Query 1391 ATA 1393
|||
Sbjct 1317 ATA 1319
> Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1
Length=1425
Score = 826 bits (447), Expect = 0.0
Identities = 887/1094 (81%), Gaps = 51/1094 (5%)
Strand=Plus/Plus
Query 116 GAAAAATGGCAGCTCCGGCGATCCTAAACGGCGGC-GATGC-G-A-CGGAGAGAGAAACA 171
|||| ||| | || ||| |||||| | ||| ||| ||| | | | |||||||||| |
Sbjct 143 GAAAGATGACGGCGCCGATGATCCTGAGCGGAGGCGGAT-CGGCAGCGGAGAGAGACGCT 201
Query 172 CGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATAAATGGAGGATACCATGTGGTT 231
|| ||||| ||| |||| ||| | || |||||| || | ||||| |||||||||||| ||
Sbjct 202 CGGATGGCGCACACTGCCATGGCGTTTGTTCAGCTCTTTAATGGCGGATACCATGTGATT 261
Query 232 ACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTTTTTTGTGTCTTTCGCGATCTT 291
|| ||||||||||| |||||||| || || ||||| || || ||||| | || ||||||
Sbjct 262 ACAAAAGTAGCTCTCAACGTTGGAGTCAACCAGCTTGTCTTCTGTGTATGCCGTGATCTT 321
Query 292 CTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGTGAAAG-AACGATCAGACCTCC 350
||||||||||| |||||||| ||||| |||| ||||| ||||| || ||||||| ||||
Sbjct 322 CTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTCCGCGAAAGCAA-GATCAGAACTCC 380
Query 351 TATGAATAGAAG-CATCTTCTTTTCACTCTTCTTTCTTGGTTTAGCAGGGATATTTGGGA 409
||||||| ||| | || |||| ||| |||||||||| || ||||||||| |||||||||
Sbjct 381 AATGAATAAAAGCCTTC-TCTTGTCATTCTTCTTTCTGGGCTTAGCAGGGGTATTTGGGA 439
Query 410 ACCAGTTACTATTTCTTATGGGT-TTATCTTACACGAATCCAACTTATGCTGCTGCTATA 468
|||| || ||||||| || ||| ||| | ||||| |||||||||||||||||||| ||
Sbjct 440 ACCAATTGTTATTTCTCATCGGTCTTA-CATACACAAATCCAACTTATGCTGCTGCCATT 498
Query 469 CAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGTACAGAAAAAGTG 528
|||||||| ||||| |||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 499 CAACCATCCATCCCGGTCTTTACCTTTCTCTTGGCTGTAATGATGGGTACAGAAAGAGTG 558
Query 529 AACTTGTTGA-AAGTCGAGGGCCAAACGAAAGTTGGAGGTACTCTTGTTTGTGTT-TCGG 586
|| ||||||| || |||| || ||||| || |||||||| || ||||| |||||| | ||
Sbjct 559 AATTTGTTGAGAA-TCGAAGGTCAAACTAAGGTTGGAGGCACACTTGTGTGTGTTAT-GG 616
Query 587 GTGCTATAGCGATGGCTT-TGTTTCGTGGTCCAGCCTTGTTTGGAGGTAAAGATGCAGCA 645
|||| | |||| || | ||||| |||||||||||||| |||| ||||||||||| |
Sbjct 617 GTGCCGTCTTTATGG-TTCTATTTCGAGGTCCAGCCTTGTTAGGAGATAAAGATGCAG-A 674
Query 646 GATT-CAG-TGAA-AAGTGTAATTATTGATAGAA-GTCAACCAGAGCTTAATGGGTGGTT 701
|| | | |||| || || ||| | || || || ||||||| |||| || |||||||||
Sbjct 675 CTTTGC-GATGAACAA-TGAAATCAGTGCTA-AAGGTCAACCTGAGCCTACTGGGTGGTT 731
Query 702 AGTCTCTAGTTTTCTTGGTCTTGGGTTTGATCA-ATGGCACATTGGAGTTTTATGTTTGA 760
||||||| ||||||| | |||||| ||||| | ||||||||||||||||||||| ||||
Sbjct 732 AGTCTCTGGTTTTCTCGATCTTGGATTTGA-GACATGGCACATTGGAGTTTTATGCTTGA 790
Query 761 TTGGAAACTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGCACCGGTTTTGAAGAAGT 820
|||||||||| |||||||||||| ||||||| || | || || || ||||||||||||
Sbjct 791 TTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCCACTTTTGAAGAAGT 850
Query 821 ATCCTGCCTACCTTTCGGTTGCTGCGTAT-TCATACTTCTTCGGTGCA-TCAATAATGAT 878
|||| || | ||||| |||||||| | | ||||||||||| ||| || | | ||||| |
Sbjct 851 ATCCGGCAAATCTTTCTGTTGCTGCAT-TGTCATACTTCTTTGGTACAGT-ACTAATG-T 907
Query 879 -CACAACAGCTATCTTGTTTGTTAGA-GAGCCTA-AAGATTGGA-GCTTAACACAATCTG 934
|||||||||| |||| | || || | ||||| | ||||||| || ||||||||||||
Sbjct 908 GCACAACAGCTTTCTT-TATGGTAAAGGAGCC-ATTGGATTGGAGGC-TAACACAATCTG 964
Query 935 AGGTTCTTGCTGTTATAT-TCGCAGGAGTGT-TTGCCTCAGCTCTAAACTATGGACTCTT 992
|||||||||| ||||||| | |||||||| | | || ||||| |||||||||||||||||
Sbjct 965 AGGTTCTTGCAGTTATATAT-GCAGGAGT-TATCGCGTCAGCACTAAACTATGGACTCTT 1022
Query 993 GACTTGGTCCAATAAAATTCTTGGAGCTGCTTTGGTTTCCCTATACAATCCTCTTCAGCC 1052
||||||||||||||| ||| |||| |||| |||||| | || |||||||||||||||||
Sbjct 1023 GACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCTTCAGCC 1082
Query 1053 TGCAACATCGGCCTTTTTATCGACAAT-TTTCCTCGGCAGCCCGATCTATCTTGGAAGCG 1111
||| |||| || || |||||| ||| |||| |||| ||||| || ||||| ||||| |
Sbjct 1083 TGCTGCATCAGCGTTCCTATCGAGAATCTTTC-TCGGTAGCCCTATTTATCTCGGAAGTG 1141
Query 1112 TTTTGGGTGGAATCCTCATCATT-TGCGGGCTTTATATGGTTACTTGGGCATC-TTACAG 1169
|| |||||||| || |||||||| | || || |||||||| ||||||||||| || ||
Sbjct 1142 TTGTGGGTGGATTCTTCATCATTCTA-GGACTCTATATGGTCACTTGGGCATCATTT-AG 1199
Query 1170 AGAGC-AACAAACA 1182
||||| || |||||
Sbjct 1200 AGAGCGAA-AAACA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5