BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45380.1
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1 2274 0.0
> Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1
Length=2443
Score = 2274 bits (1231), Expect = 0.0
Identities = 1406/1488 (94%), Gaps = 22/1488 (1%)
Strand=Plus/Plus
Query 65 TTCCTTTGTTTGCTAAATCAAGATTCTTTC-AAGTTGAAGATTCTTTC---TA---A-TA 116
||| ||| |||||||||||||||||||||| || ||||||||||||| || | ||
Sbjct 10 TTCTTTTTTTTGCTAAATCAAGATTCTTTCTAA-CTGAAGATTCTTTCTATTAGCTATTA 68
Query 117 G-TATATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 175
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GTTTTATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 128
Query 176 TCACTTTTCCAATCAAAAC-----GTA-AAGAAGAAG-AG--GAAGAATGGCTACATGTC 226
|||||||||| || ||||| | | ||||||||| || |||||||||| |||||||
Sbjct 129 TCACTTTTCCGATAAAAACTTAAAGAAGAAGAAGAAGAAGAAGAAGAATGGCCACATGTC 188
Query 227 CTCCTTTCGATTTCTCGACCAAATATTACGATGGTGA---CGGCGGATGCCAGAGGCAGA 283
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 189 CTCCTTTCGATTTCTCGGCCAAATATTACGACGGTGACGGCGGCGGATGCCAGAGGCAGA 248
Query 284 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTGATTCTTG 343
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 249 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTTATTCTTG 308
Query 344 GTTTTGGTGCTTTCTTTGCCGTCTTCACATCTTTTTTGGTATGGTTAGAAAAACGATATG 403
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 309 GTTTTGGTGCTTTCTTTGCCATCTTCACATCTTTTTTGGTATGGCTAGAAAAACGATATG 368
Query 404 TGGGAGCTCGTCATACATCGGAATGGTTCAATACAGCGGGAAGAAACGTTAAGACAGGAC 463
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 TGGGAGCTCGTCATACCTCGGAATGGTTCAATACAGCTGGAAGAAACGTTAAGACAGGAC 428
Query 464 TTATTGCAAGTGTCATTGTATCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 523
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCATTGCAAGTGTCATTGTGTCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 488
Query 524 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATAC 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 489 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATTC 548
Query 584 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATAAAAAGAAAGGCTCCTAATGCTCACA 643
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 549 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATTAAAAGAAAGGCTCCCAATGCTCACA 608
Query 644 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTGTTTTTGGTGT 703
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 609 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTATTTTTGGTGT 668
Query 704 TTTGTTTGGCGACAAACGTCGTTGTGACGGCGATGCTCTTGCTCGGCGGCTCTGCTGTGG 763
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 669 TTTGTTTGGCGACAAACGTCATTGTGACGGCGATGCTCTTGCTCGGTGGCTCGGCTGTGG 728
Query 764 TGAATGCTCTAACCGGAGTGAATCTATACGCCGCAAGCTTTCTCATTCCTCTCGGCGTCG 823
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || |
Sbjct 729 TGAATGCTCTTACCGGAGTGAATCTATACGCTGCAAGCTTTCTTATTCCTCTCGGTGTTG 788
Query 824 TTGTCTATACTTTGGCTGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 883
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTGTCTATACTTTGGCCGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 848
Query 884 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAAAGAGC 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 849 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAGTGAGC 908
Query 944 TTGGCAGTCCGTCCGTGGTCTATGACCGACTAAAAGATATGGTCGCTAAGTCAAGGTCAT 1003
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 909 TTGGGAGTCCGTCCGTGGTCTATGACCGACTAAGAGATATGGTCGCTAAGTCAAGGTCAT 968
Query 1004 GCACTGAGCCACTCTCGCACCACGGTCAAGCTTGTGGTCCGGTTGATGGCAACTTTAGAG 1063
|||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||||
Sbjct 969 GCACCGAGCCGCTCTCGCACCACGATCAAGCTTGCGGTCCGGTGGATGGCAACTTCAGAG 1028
Query 1064 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTCGGTCTCATCAACATTGTCG 1123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1029 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTTGGTCTCATCAACATTGTCG 1088
Query 1124 GAAACTTCGGCACTGTCTTCGTAGATAATGGTTATTGGGTGAGTGCAATAGCTGCTCGGC 1183
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1089 GAAACTTCGGCACTGTCTTCGTAGACAATGGTTATTGGGTGAGTGCAATAGCTGCTCGAC 1148
Query 1184 CTTCGTCGACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCGTTCT 1243
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1149 CTTCATCAACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCTTTCT 1208
Query 1244 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGACG 1303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1209 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGATG 1268
Query 1304 AGGCTGACCGAGGTTTGGTTCCACCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1363
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1269 AGGCTGACAGAGGTTTGGTTCCGCCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1328
Query 1364 CCTTGCTTCTACTCACTATGCTATTTATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1423
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1329 CCTTGCTTCTTCTCACTATGCTGTTCATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1388
Query 1424 TTGCAGTCTCATCGCTCTTTACATATGACATCTACCGAACATACATAAACCCTAGAGCAA 1483
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1389 TTGCAGTCTCATCGCTGTTCACATACGACATCTACCGAACATACATAAACCCTAGAGCAA 1448
Query 1484 CCGGTAGACAAATCTTGAAAATCTCAAGATGCGCTGTTCTTGGATTTG 1531
|||||| ||||||||||| ||||||||||| ||| ||||| |||||||
Sbjct 1449 CCGGTAAACAAATCTTGAGAATCTCAAGATCCGCGGTTCTCGGATTTG 1496
Score = 887 bits (480), Expect = 0.0
Identities = 603/659 (92%), Gaps = 22/659 (3%)
Strand=Plus/Plus
Query 1847 GTCTAGTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1906
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GTCTACTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1862
Query 1907 C-GTATGCTTCAGGGGACGAAGATGTTGATGTTCCTGCCGAAGAGCTAAGAGAAGAGAAG 1965
| | |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1863 CCG-ATGCTTCAGGAGACGAAGAAGTTGATGTTCCGGCCGAAGAACTAAGAGAAGAGAAG 1921
Query 1966 CTGAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGTCTTGTCTTCACTATCCTCATTGTT 2025
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1922 CTTAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGCCTTGTCTTCACTATCCTCATTGTT 1981
Query 2026 GTCATTTGGCCAGTTCTCTCTCTCCCAGCTCGCGTATTTAGCAGAGGATATTTCTGGTTT 2085
| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 1982 ATAATTTGGCCAGTTCTCTCTCTCCCAGCACGTGTGTTTAGTAGAGGATATTTCTGGTTT 2041
Query 2086 TGGGCAATTGTGGCAATAGCTTGGGGAACTATAGGATCCATCGTGATCATTGGTTTGCCA 2145
|||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 2042 TGGGCAATTGTGGCTGTAGCTTGGGGAACTATAGGATCAATTGTGATAATTGGTTTGCCA 2101
Query 2146 TTGGTGGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATAGG 2205
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2102 TTGGTCGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATATG 2161
Query 2206 GTGATGAAAAAGCTTGACGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTGCCA 2265
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2162 GTAATGAACAAGCTTGATGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTACCA 2221
Query 2266 GAAGCTGAGAAGATATATTTGCTTGAACTTGAGAAGACCAAGAAAAATGATGAAGAAGGT 2325
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2222 GAAGCTGAGAAGATTTATTTGCTTGAACTTGAGAAGACCAAGAAAACCGATGAAGAACGT 2281
Query 2326 TGAAGAAATATCATATTGGGTACACAAAAGGTT---GATACTCTATTTTTGTTTGTATGC 2382
||||||||||| ||||||||||||||||||||| |||||| | ||||||||| |||||
Sbjct 2282 TGAAGAAATATAATATTGGGTACACAAAAGGTTAATGATACTTTCTTTTTGTTTATATGC 2341
Query 2383 TTTGTTTGGTTGTCTTTTCTTGTTAATTTGTGTGAAATCGCATCAAAGCTATCTCCGTTT 2442
||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct 2342 TTTGTTTGGTTGTCTTTTCTTGTTA-T-----------C--A--AA-GCTATCTCCGTTT 2384
Query 2443 GTACAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACAGTGAA 2501
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2385 GTATAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACTGTGAA 2443
Score = 381 bits (206), Expect = 1e-104
Identities = 237/252 (94%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 1571 CTGGTGTTTCACTTGGATGGATGTATCTCGCAATGGGAGTACTCATTGGTTCTGCGGTCA 1630
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1498 CTGGTGTTTCACTTGGATGGATGTATCTCGC-ATGGGAGTGCTCATTGGTTCTGCGGTCA 1556
Query 1631 TTCCCATTGCTTTCATGCTCTTGTGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAG 1690
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1557 TTCCTATAGCTTTCATGCTCTTATGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAT 1616
Query 1691 CGACCTCGGGTTGTGTTTTTGGGATCATTACTTGGCTAACTACCGCAAAGACACAGTACG 1750
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1617 CGACCTCGGGTTGTGTTCTTGGGATCATTACTTGGCTTTCTACCGCAAAGATACAGTACG 1676
Query 1751 GACGCGTTGATCTTGATAGCACCGGGAAAAATGGCCCTATGTTAGCTGGTAACCTCGTTG 1810
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1677 GACGCGTTGATCTTGATAGCACTGGGAAAAATGGCCCCATGTTAGCTGGTAACCTCGTCG 1736
Query 1811 CGATTCTAACAG 1822
| |||||| |||
Sbjct 1737 CTATTCTAGCAG 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95225612500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5