BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45390.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494440 jgi|Araly1|494440|fgenesh2_kg.8__256__AT5G45390.1 1788 0.0
Ahg922229 jgi|Araly1|922229|scaffold_103510.1 1168 0.0
> Ahg494440 jgi|Araly1|494440|fgenesh2_kg.8__256__AT5G45390.1
Length=1147
Score = 1788 bits (968), Expect = 0.0
Identities = 1074/1126 (95%), Gaps = 4/1126 (0%)
Strand=Plus/Plus
Query 14 TTTCCCCAAATTTCTTTCTTCTTCTTCGCTTCAGCCATGGGAACCCTATCTCTCTCATCT 73
||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTTTCCCAAATTTCTCTATTCTTCTTCGCTTCAGCCATGGGAACCCTATCTCTCTCCTCT 60
Query 74 TCTCTCAAACCTTCACTCGTTTCATCAAGACTCAATTCATCTTCCTCCGCATCTTCTTCT 133
||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 TCTCTAAAACCTTCTCTCGTTTCATCAAGACTCAATTCAGCTTCCTCTGCATCTTCTTCT 120
Query 134 TCGTTTCCTAAACCAAACAATCTCTACCTCAAACCCACCAAACTCATTTCACCACCTCTC 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTTTCCTAAACCAAACAATCTCTACCTCAAACCCACCAAACTCATTTCACCACCTCTC 180
Query 194 AGAACAACTTCACCATCGCCATTGAGATTCGCCAATGCTTCAATCGAGATGTCGCAGACA 253
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGAACAACTTCTCCGTCGCCATTGAGATTCGCCAATGCTTCAATCGAGATGTCACAGACA 240
Query 254 CAGGAATCAGCTATTCGCGGAGCTGAATCTGACGTCATGGGTCTTCTCCTTAGGGAACGA 313
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CAGGAATCAGCTATTCGCGGAGCTGAATCTGACGTCATGGGTCTTCTTCTTAGGGAACGA 300
Query 314 ATCGTCTTTCTCGGTAGTAGTATCGACGATTTCGTCGCTGATGCTATTATGAGTCAGTTG 373
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 301 ATCGTCTTTCTTGGTAGTAGTATCGACGATTTCGTCGCTGATGCTATCATGAGTCAATTG 360
Query 374 CTTCTCTTAGATGCTAAAGATCCAAAGAAAGATATCAAACTCTTTATCAATTCTCCTGGT 433
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTTTTAGATGCTAAAGATCCTAAGAAAGATATCAAACTCTTTATCAATTCTCCTGGT 420
Query 434 GGTTCTCTCAGTGCAACCATGGCTATATACGATGTGGTTCAGCTTGTGAGAGCTGATGTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTCTCTCAGTGCAACCATGGCTATATACGATGTGGTTCAGCTTGTGAGAGCTGATGTT 480
Query 494 TCGACGATTGCTCTTGGCATTGCTGCATCAACAGCTTCGATTATTCTTGGTGCGGGAACT 553
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TCGACGATTGCTCTTGGCATTGCTGCATCAACAGCTTCGATAATTCTTGGTGCGGGAACT 540
Query 554 AAAGGCAAGCGCTTTGCTATGCCCAACACGAGGATAATGATTCATCAACCTCTTGGAGGT 613
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 AAAGGCAAGCGCTTTGCTATGCCCAACACGAGGATAATGATTCATCAACCACTTGGAGGT 600
Query 614 GCAAGCGGTCAAGCTATAGATGTTGAGATTCAAGCTAAGGAAGTTATGCATAACAAGAAC 673
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GCGAGCGGTCAAGCTATAGATGTTGAGATTCAAGCTAAGGAGGTTATGCATAACAAGAAC 660
Query 674 AATGTCACCAGCATTATCGCGGGATGTACTAGTCGATCGTTTGAGCAGGTTCTGAAAGAT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 AATGTCACCAGCATTATCGCGGGATGTACTAGTCGATCGTTTGAGCAGGTTCTTAAAGAT 720
Query 734 ATTGATAGGGACCGGTACATGTCTCCAATTGAAGCAGTTGAGTATGGTTTAATTGATGGA 793
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 721 ATTGATAGAGACCGGTACATGTCTCCAATTGAAGCGGTTGAGTATGGTTTAATAGATGGA 780
Query 794 GTTATTGATGGAGACAGCATTATTCCTCTTGAACCTGTTCCTGATAGAGTGAAACCGAGA 853
||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 781 GTTATCGATGGTGACAGCATTATTCCTCTCGAACCCGTTCCTGATAGAGTGAAACCGAGA 840
Query 854 GTAAACTACGAGGAGATTAGCAAGGATCCGATGAAATTCTTGACTCCCGAGATACCTGAT 913
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 841 GTAAACTACGAGGAGATTAGCAAGGATCCAATGAAATTCTTGACTCCCGAGATACCAGAT 900
Query 914 GATGAGATCTACTAAAGCCAAGCTCGTCTAGAAGCAGGGATCTTCAAATGTGACTAAGAC 973
|||||||| |||||||| ||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 901 GATGAGATTTACTAAAGGCAAGCTCATCTAGAACCAGGGATCTTCCAATGTGACTAAGAC 960
Query 974 TAGCAGTTTCGAGGAAAA-GCTCAATTTCTTCTGCGGTTACTGGTATTGGCTTTGCGAAA 1032
|||| |||| |||||||| |||| || |||||||||||||||||| ||||||||||||||
Sbjct 961 TAGCGGTTTTGAGGAAAAAGCTCGATATCTTCTGCGGTTACTGGTGTTGGCTTTGCGAAA 1020
Query 1033 CCGAAGCTGGTAGTACTTGGCTTTTGTA-TCTCATATTTCAGTTGTTCAGAAAATAATTG 1091
||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
Sbjct 1021 CCGAAGCTGGTAGTACTTGCCTTTTGTAATCTCATATTTCACTTGTTCAGAAAATAAT-G 1079
Query 1092 TTCTTTAAATCACTCTGTTTTGAGGAAAATGACTTAAAGAAGCTGT 1137
||| || |||||||||||||||| |||||||||| |||||| |||
Sbjct 1080 TTCCTTGTATCACTCTGTTTTGAGCAAAATGACTTTAAGAAG-TGT 1124
> Ahg922229 jgi|Araly1|922229|scaffold_103510.1
Length=727
Score = 1168 bits (632), Expect = 0.0
Identities = 694/725 (96%), Gaps = 0/725 (0%)
Strand=Plus/Plus
Query 222 TCGCCAATGCTTCAATCGAGATGTCGCAGACACAGGAATCAGCTATTCGCGGAGCTGAAT 281
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCGCCAATGCTTCAATCGAGATGTCACAGACACAGGAATCAGCTATTCGCGGAGCTGAAT 60
Query 282 CTGACGTCATGGGTCTTCTCCTTAGGGAACGAATCGTCTTTCTCGGTAGTAGTATCGACG 341
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 61 CTGACGTAATGGGTCTTCTTCTTAGGGAACGAATCGTCTTCCTCGGTAGTAGTATCGATG 120
Query 342 ATTTCGTCGCTGATGCTATTATGAGTCAGTTGCTTCTCTTAGATGCTAAAGATCCAAAGA 401
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 121 ATTTCGTCGCTGATGCTATCATGAGTCAATTGCTACTTTTAGATGCTAAAGATCCTAAGA 180
Query 402 AAGATATCAAACTCTTTATCAATTCTCCTGGTGGTTCTCTCAGTGCAACCATGGCTATAT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGATATCAAACTCTTTATCAATTCTCCTGGTGGTTCTCTCAGTGCAACCATGGCTATAT 240
Query 462 ACGATGTGGTTCAGCTTGTGAGAGCTGATGTTTCGACGATTGCTCTTGGCATTGCTGCAT 521
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACGATGTGGTACAGCTTGTGAGAGCTGATGTTTCGACGATTGCTCTTGGCATTGTTGCAT 300
Query 522 CAACAGCTTCGATTATTCTTGGTGCGGGAACTAAAGGCAAGCGCTTTGCTATGCCCAACA 581
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 301 CAACAGCTTCGATTATTCTTGGAGCGGGAACTAAAGGTAAGCGCTTTGCTATGCCCAACA 360
Query 582 CGAGGATAATGATTCATCAACCTCTTGGAGGTGCAAGCGGTCAAGCTATAGATGTTGAGA 641
| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 361 CTAGGATAATGATTCATCAACCACTTGGAGGTGCGAGCGATCAAGCTATAGATGTTGAGA 420
Query 642 TTCAAGCTAAGGAAGTTATGCATAACAAGAACAATGTCACCAGCATTATCGCGGGATGTA 701
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TTCAAGCTAAGGAGGTTATGCATAACAAGAACAATGTCACCAGCATTATCGCGGGTTGTA 480
Query 702 CTAGTCGATCGTTTGAGCAGGTTCTGAAAGATATTGATAGGGACCGGTACATGTCTCCAA 761
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 481 CTAGTCGATCGTTTGAGCAGGTTCTTAAAGATATTGATAGAGACCGGTACATGTCTCCGA 540
Query 762 TTGAAGCAGTTGAGTATGGTTTAATTGATGGAGTTATTGATGGAGACAGCATTATTCCTC 821
||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 541 TTGAAGCGGTAGAGTATGGTTTGATAGATGGAGTTATTGATGGAGACAGCATTATTCCTC 600
Query 822 TTGAACCTGTTCCTGATAGAGTGAAACCGAGAGTAAACTACGAGGAGATTAGCAAGGATC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGAACCTGTTCCTGATAGAGTGAAACCGAGAGTAAACTACGAGGAGATTAGCAAGGATC 660
Query 882 CGATGAAATTCTTGACTCCCGAGATACCTGATGATGAGATCTACTAAAGCCAAGCTCGTC 941
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct 661 CGATGAAATTCTTGACTCCCGAGATACCAGATGATGAGATTTACTAAAGGCAAGCTCATC 720
Query 942 TAGAA 946
|||||
Sbjct 721 TAGAA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5