BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45400.1
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313748 jgi|Araly1|313748|fgenesh1_pm.C_scaffold_1002528 2968 0.0
Ahg329623 jgi|Araly1|329623|fgenesh1_pm.C_scaffold_7001850 1218 0.0
> Ahg313748 jgi|Araly1|313748|fgenesh1_pm.C_scaffold_1002528
Length=2469
Score = 2968 bits (1607), Expect = 0.0
Identities = 1917/2062 (93%), Gaps = 39/2062 (2%)
Strand=Plus/Plus
Query 522 TGGAAGATACTGTGTATCGGCTAATTCACCTCAGCCTCAAGTT-GT--TCATAGCAGTTC 578
||| |||||| ||||||| ||||||||||||||||||| ||| || || || ||||||
Sbjct 426 TGGGAGATACGGTGTATCTGCTAATTCACCTCAGCCTCTGGTTGGTGGTCTTAACAGTTC 485
Query 579 CGACGCTGGAAGATATGGTGTATCGGCTAATTCACCTCAGCGTCAAGTT-GT--TCATAA 635
||||||||| ||||||||||||||||||| || |||||| ||||||| || || |||
Sbjct 486 CGACGCTGGGAGATATGGTGTATCGGCTAGTTTGGCTCAGCCTCAAGTTGGTGGTC-TAA 544
Query 636 CAGTCCCGACGCTGGGAGATATGGACAGCCTCAAGTTAGTCAAAGATATGGTACTGGTTC 695
|||| |||| |||||||||||| | | | |||||||||||||||||||||
Sbjct 545 CAGTTCCGATGCTGGGAGATAT-----G------G-T--TCAAAGATATGGTACTGGTTC 590
Query 696 TGGTTATCCGGAAACATCACCTTCCACTAGACCGTATGTGAGCTCAAATGCAGGTTATGG 755
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 591 TGGTTATCCGGAAACATCACCTTCCACCAGACCGTATGTGAGTTCAAATGCAGGTTATGG 650
Query 756 AGGCTCTAGGCAGGACCAACCTCGGGCTCCTACTGCAACAACTGCTTATTCCCGTCCGGT 815
||| ||||| ||||| ||||||||||||||| || | ||||| ||||||||||||| ||
Sbjct 651 AGGGTCTAGACAGGAGCAACCTCGGGCTCCTCCTACGACAACCACTTATTCCCGTCCAGT 710
Query 816 TCAGTCAGCTTATCAGCCACAACAACCACCGATGTATGTTAACAGGGGACCTGTGGCTAG 875
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 711 TCAGTCAGCTTATCAGTCACAACAACCACCGATGTATGTTAATAGGGGACCTGTGGCTAG 770
Query 876 GAACGAAGCTCCTCCGAGGATAAATCCGATTGCTGCTCTTAATCCTTACCAGGGTCGGTG 935
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 771 GAATGAAGCTCCTCCGAGGATAATTCCGATTGCTGCTCTTAATCCTTACCAGGGTCGGTG 830
Query 936 GACCATCAAGGTTAGGGTCACGAGTAAGGCAGACCTGAGGCGGTTTAATAATCCGCGTGG 995
|||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 831 GACCATCAAGGTCAGGGTCTCGAGTAAGGCAGAACTGAGACGGTTTAATAATCCGCGTGG 890
Query 996 GGAAGGGAAGTTGTTCAGTTTTGATCTTCTTGATGCTGATGGTGGAGAAATACGGGTGAC 1055
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 891 GGAAGGGAAATTGTTCAGTTTTGATCTCCTTGATGCTGATGGTGGAGAAATACGGGTGAC 950
Query 1056 TTGTTTTAATGATGCGGTTGATCAATTCTTTGACAAGATTGTAGTTGGTAATGTTTATCT 1115
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 951 TTGTTTTAATGATGCGGTTGATCAATTCTTTGACCAGATTGTAGTTGGTAATGTTTATCT 1010
Query 1116 GATTTCAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTTTAATCATCTTCCGAATGATTA 1175
||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1011 GATATCAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTATAATCATCTTCCCAATGATTA 1070
Query 1176 TGAAATACATTTGGACTCTGCATCAACGATACAGC-CTTGTGAAGATGATGGTACCATTC 1234
||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 1071 TGAAATACATTTGGATTCTGCATCAACGATACAGCGC-TGTGAGGATGATGGTACCATTC 1129
Query 1235 CACGCTATCATTTCCATTTTCGTAACATAGGTGATATTGAAAACATGGAGAACAACAGCA 1294
||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1130 CACGCAATCAGTTCCATTTTCGTAACATAAGTGATATTGAAAACATGGAGAGCAACAGCA 1189
Query 1295 CCACTGATGTAATTGGTATTGTTTCGTCCATCAGT-CCGACAGTAGCAATTATGCGGAAA 1353
|||||| ||||||||||||||||||||||| || || |||||| ||||||||||||||
Sbjct 1190 TGACTGATCTAATTGGTATTGTTTCGTCCATCGGTACC-ACAGTACCAATTATGCGGAAA 1248
Query 1354 AACTTAACTGAGGTACAGAAAAGGTCTCTTCAGTTGAAGGATATGTCAGGCCGAAGTGTT 1413
||| |||||||||| | |||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1249 AACGGAACTGAGGTAGATAAAAGGGCACTTCAGTTGAAGGATATGTCAGGCCGTAGTGTT 1308
Query 1414 GAGGTAACCATGTGGGGTAATTTCTGCAACGCAGAAGGACAGAAATTGCAAAATCTTTGT 1473
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1309 GAGGTAACCATGTGGGGTAATTTCTGCAGCGCAGAAGGACAGCAATTGCAAAATCTTTGT 1368
Query 1474 GATTCTGGGGTATTCCCGGTTCTTGCTTTGAAAGCGGGCAGGATCGGTGAATTCAACGGG 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GATTCTGGGGTATTCCCGGTTCTTGCTTTGAAAGCGGGCAGGATCGGTGAATTCAACGGG 1428
Query 1534 AAGCAAGTGAGCACAATTGGAGCAAGTCAATTCTTTATAGAGCCAGATTTCCCTGAAGCC 1593
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1429 AAGCAAGTGAGCACCATTGGATCAAGTCAATTCTTCGTAGAGCCAGATTTCCCTGAAGCC 1488
Query 1594 AGAGAATTAAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTTTACCTCCATATCT 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AGAGAATTAAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTTTACCTCCATATCT 1548
Query 1654 AGAGAGTTTTCCGGTGTTGGCAGACAAGAAGTTCGCAAGGTAATTGCACAGATCAAGGAC 1713
||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1549 AGAGAGTTTTCCGGTGTTGGCAGACAAGAGGTTCGCAAGGTAATTACTCAGATCAAGGAC 1608
Query 1714 GAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCATTTCATTC 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 GAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCATTTCATTC 1668
Query 1774 ATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGATCGTCCATGC 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGATCGTCCATGC 1728
Query 1834 AGCAAAAAGGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGTGACAAATGC 1893
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AGCAAAAAAGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGTGACAAATGC 1788
Query 1894 GTGGATGAATGTGACTACAGGTATATATTACAGATCCAGTTACAGGACCATACAGACCTA 1953
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1789 GTGGATGAATGTGACTACAGGTATATATTGCAGATCCAGTTACAGGACCATACAGGCCTA 1848
Query 1954 ACCTGGGCAACTGCATTCCAAGAAGCTGGTGAAGAGATAATGGGAATGTCTGCAAAAGAT 2013
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1849 ACCTGGGCCACAGCATTCCAGGAAGCTGGTGAAGAGATAATGGGAATGTCTGCAAAAGAT 1908
Query 2014 TTGTATTATGTGAAGTATGAAAATCAGGATGAGGAGAAATTTGAAGATATCATCCGCAGT 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TTGTATTATGTGAAGTATGAAAATCAGGATGAGGAGAAATTTGAAGATATCATCCGCAGT 1968
Query 2074 GTCGCTTTTACTAAGTACATTTTCAAGCTGAAGATTAAAGAAGAAACTTACAGCGATGAG 2133
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1969 GTCGCTTTTACCAAGTACATTTTTAAGCTGAAGATTAAAGAAGAAACTTATAGCGACGAG 2028
Query 2134 CAGCGGGTTAAAGCAACAGTTGTGAAAGCTGAAAAGCTGAATTAT-TCTTCAAATACCAG 2192
|| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 2029 CAACGGGTTAAAGCAACAGTTGTGAAAGCTGAAAAGCTGAACTATGT-TTCAAATACCAG 2087
Query 2193 GTTCATGCTAGAGGCAATAGATAAACTCAAGATAGGAGATGCAAATTCTCTCCCTATAAA 2252
|| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2088 GTGCATGCTAGAGGCAATGGATAAACTCAAGGTAGGAGATGCAAATTCTCTGCCTATAAA 2147
Query 2253 GGCAGAGAGTTCCAATTACAGGTCTGATGCATTTAATTCCGGTGTTGGAACCTCAGGAAC 2312
| || |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2148 GACACAGAGTTCCAACTACAGGTCTGATGCAGTTAATTCCGGTATTGGAACCTCAGGAAC 2207
Query 2313 TAGAGACACCGCATCAGTCGATGCACGCAGAGAATTTGGATTACCTGCAGCAAACCAAGT 2372
||||||||| || ||||| |||||||| |||||||| ||| |||||||||||||||||||
Sbjct 2208 TAGAGACACTGCGTCAGTGGATGCACGAAGAGAATTCGGAGTACCTGCAGCAAACCAAGT 2267
Query 2373 GGGTCAATATGGAAATCAGTACAGTAGTGATGCAAGGTCTCTTGGCGGTTTTACTAGCTG 2432
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2268 GGGTCAATATGGAAATCAGTACAGTAGTGGTGCAAGGTCTCTTGGCGGTATTACTAGCTG 2327
Query 2433 CAACGTGTGTCGCAGCAACAGCCATGTTTCTGCAAACTGCCCAACCCTTATGAGTGAGCC 2492
||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2328 CAACGCATGTGGCAGCAACAGCCATGTTTCGGCAAACTGCCCAAGCCTTATGAGTGAGCC 2387
Query 2493 ACAAGGACAATACATGGGTGG--CAC----AA-AT-----GCAGGAGGAGGTATGCCAAG 2540
|||||||||||||||| ||| ||| || || |||||||||||| |||||||
Sbjct 2388 ACAAGGACAATACATGAATGGGACACCGGGAAGATACAATGCAGGAGGAGGTTTGCCAAG 2447
Query 2541 GCAACATGTAGGCAGCTACTGA 2562
|||| |||| ||||||||||||
Sbjct 2448 GCAAAATGTTGGCAGCTACTGA 2469
Score = 484 bits (262), Expect = 1e-135
Identities = 499/606 (82%), Gaps = 46/606 (8%)
Strand=Plus/Plus
Query 1 ATGGCGGTGAGTTTGACGG-AGGGAGTGGTAATGAAGATGTTGAACGGAGAAGTGACGAG 59
|||||||||| |||||||| | |||| | ||| |||||| ||||| ||||||||| ||||
Sbjct 1 ATGGCGGTGAATTTGACGGCA-GGAGCGATAACGAAGATATTGAATGGAGAAGTGTCGAG 59
Query 60 CGAGACAGATATGATGCCAGTGCTACAAGTAACGGAATTGAAGCTGATTCAGAGCAAGCT 119
|||| |||| |||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 60 TGAGATAGATTTGATGCCAGTGCTACAAGTAACGGAATTGAAGATGATTCA-A--A-GC- 114
Query 120 TCATCAAAATCAGGAATCTAGCAATCGATATAAGTTTTTATTATCAGATGGGACTGACTT 179
| | || | | | || | | | | ||| | | ||||||||||| | ||||
Sbjct 115 --A--A---TC-G-A-TATA--A---G-T-T---TTTGT-T-ATCAGATGGGATTCACTT 152
Query 180 GGCA-GCAGGAATGCTTAATACTTCATTGAACAGTTTAGTGAATCAAGGAACTATTCAAT 238
| || |||||||||||||| ||| |||||||||||||||||| |||||| | ||||||||
Sbjct 153 G-CAAGCAGGAATGCTTAAGACTACATTGAACAGTTTAGTGATTCAAGGCAGTATTCAAT 211
Query 239 TGGGTTCGGTTATAAGACTCACTCACTACATCTGCAATCTCATCCAGACTCGAAGGATTG 298
|||||||| || | |||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 212 TGGGTTCGATTGTTAGACTCACTCACTATGTCTGCAGTCTCATCCAGGGTCGAAGGATTG 271
Query 299 TTGTTATTATGCAATTGGAGGTTATTGTGGAGAAATGTAATATAATTGGAAATCCTAAAG 358
|| | ||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
Sbjct 272 TTATAATTATGCAATTGGAGGTTATTGTGGCGAAATGTGATATAATTGGAACTCCTAATG 331
Query 359 AACCTGGGCATAGCTCGATTAATCCACAACGTGGTGGAGTTAACACACAAAGCAATGGTG 418
|||||||||| | | || | | || || | | ||||||||||||||||||||||
Sbjct 332 AACCTGGGCA-A-CGCGGTGGA-CCGG--CG-GTTCCTGTTAACACACAAAGCAATGGTG 385
Query 419 GTTCTGAGCAGCAACAAGCTAGAAGGAGTGATGTGAATGGTGGGAGATACGGTGTATCGG 478
||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 386 GTTTTGACCAGCAACAAGCTAGAAGGAGTGATGTCAATGGTGGGAGATACGGTGTATCTG 445
Query 479 CTAATTCGCCTCAACCTCAAGTTG-T--TCATAACAGTTCCGACGCTGGAAGATACTG-T 534
||||||| ||||| |||| |||| | || |||||||||||||||||| ||||| || |
Sbjct 446 CTAATTCACCTCAGCCTCTGGTTGGTGGTCTTAACAGTTCCGACGCTGGGAGATA-TGGT 504
Query 535 GTATCGGCTAATTCACCTCAGCCTCAAGTTG-T--TCATAGCAGTTCCGACGCTGGAAGA 591
|||||||||| || ||||||||||||||| | || || ||||||||| ||||| |||
Sbjct 505 GTATCGGCTAGTTTGGCTCAGCCTCAAGTTGGTGGTC-TAACAGTTCCGATGCTGGGAGA 563
Query 592 TATGGT 597
||||||
Sbjct 564 TATGGT 569
> Ahg329623 jgi|Araly1|329623|fgenesh1_pm.C_scaffold_7001850
Length=2406
Score = 1218 bits (659), Expect = 0.0
Identities = 1399/1745 (80%), Gaps = 95/1745 (5%)
Strand=Plus/Plus
Query 828 TCAGCCACAA-CA--ACCACCGATGTATGTTAACAGGGGACCTGTGGCT-AGGAACGAAG 883
|||||| ||| || |||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct 633 TCAGCCTCAACCACCACCACCGATGTATGCAAACAGGGGACCAGTGG-TAAGGAACGAAG 691
Query 884 CTCCTCCGAGGATAAATCCGATTGCTGCTCTTAATCCTTAC-CAGGGTCGGTGGACCATC 942
| ||||| ||||||| ||| ||| |||||||| || ||| | |||| |||||||||||
Sbjct 692 CACCTCCTAGGATAATTCCAATTAATGCTCTTAGCCCGTACTC-GGGTAGGTGGACCATC 750
Query 943 AAGGTTAGGGTCACGAGTAAGGCAGAC-CTGAGGCGGTTTAATAATCCGCGTGGGGAAGG 1001
|||| || ||||||| ||| |||| | || | || | | |||||| |||||||| ||
Sbjct 751 AAGGCCAGAGTCACGAATAAAGCAG-CACTTAAGCAATACAGTAATCCCCGTGGGGAGGG 809
Query 1002 G-AAGTTGTTCAGTTTTGATCTTCTTGATGCTGATGGTGGAGAAATACGGGTGACTTGTT 1060
| ||| |||||| ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 810 GAAAG-TGTTCAACTTTGATCTTCTTGATGCTGATGGCGGAGAAATACGTGTTACTTGTT 868
Query 1061 TTAATGATGCGGTTGATCAATTCTTTGACAAGATTGTAGTTGGTAATGTTTATCTGATTT 1120
|||| | || || |||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 869 TTAACGCTGTGGCTGATCAATTCTTTGACCAGATTGTTGTTGGTAATCTTTATCTGATTT 928
Query 1121 CAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTTTAATCATCTTCCGAATGATTATGAAA 1180
| ||||||| |||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 929 CGAGGGGAAGTTTGCGGCCTGCTCAGAAGAACTTTAATCATCTTCCCAATGATTACGAGA 988
Query 1181 TACATT-TGGACTC-TGCATCAACGATACAGCCTTG-T--GAAGATGATGGTACCATTCC 1235
| ||| |||| | ||||||||| ||| | | || | || || |||| | | |||||
Sbjct 989 T-CATGCTGGA-TAATGCATCAACTATAAAACAATGCTATGAGGAGGATGCTGCAATTCC 1046
Query 1236 ACGCTATCATTTCCATTTTCGTAAC-ATAGGTGATATTGAAAACATGGAGAACAACAGCA 1294
||| | || |||||||| |||| | |||||||||||||||| ||||||||| |||||||
Sbjct 1047 GCGCCAACAGTTCCATTTCCGTA-CTATAGGTGATATTGAAAGCATGGAGAATAACAGCA 1105
Query 1295 CCACTGATGTAATTGGTATTGTTTCGTCCATCAGTCCGACAGTAGCAATTATGCGGAAAA 1354
|| |||||||||||||||||| || || |||||||| || ||| |||| | | ||||||
Sbjct 1106 TCATTGATGTAATTGGTATTGTGTCATCTATCAGTCCTACTGTAACAATAACGAGGAAAA 1165
Query 1355 ACTTAACTG-AGGTACAGAAAAGGTCTCTTCAGTTGAAGGATATGTCAGGCCGAAGTGTT 1413
|| ||||| | || |||||| || |||||||||||||||||||| |||||||||||
Sbjct 1166 ACGGAACTGCAAC-ACCGAAAAGATCACTTCAGTTGAAGGATATGTCTGGCCGAAGTGTC 1224
Query 1414 GAGGTAACCATGTGGGGTAATTTCTGCAACGCAGAAGGACAGAAAT-TGCAAAATCTTTG 1472
||| |||| ||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 1225 GAGTTAACTATGTGGGGTAACTTCTGCAATGCAGAAGGACA-AAGGCTGCAAAATCTTTG 1283
Query 1473 TGATTCTGGGGTA-TTCCCGGTTCTTGCT-TTGAAAGCGGGCAGGATCGGTGAATTCAAC 1530
||||||||||| | || |||||||||||| || || |||||||||||| ||||||| |||
Sbjct 1284 TGATTCTGGGG-AGTTTCCGGTTCTTGCTGTT-AAGGCGGGCAGGATCAGTGAATTTAAC 1341
Query 1531 GGGAAG-CAAGTGAGCACAATTGGAGCAAGTCAATTCTTTATAGAGCCAGATTTCCCTGA 1589
|| ||| || |||||||| |||||| |||||||| | || || || |||||||| |||
Sbjct 1342 GGAAAGACA-GTGAGCACCATTGGATCAAGTCAACTGTTCATTGACCCAGATTTTGTTGA 1400
Query 1590 AGCC-AGAGAATT-AAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTT-TACCTC 1646
|||| | | || | |||| | |||| |||||||||||||| || || || || || |||
Sbjct 1401 AGCCCACA-AACTGAAGG-ACTGGTTTGAGAGAGAAGGAAAGAGTG-TCCCTTGTATCTC 1457
Query 1647 CATATCTAGAGAGTTTTCCGGT-GTTGGCAGACAAGAAGTTCGCAAGGTAATTGCACAGA 1705
| ||||| | ||||||||||| || |||||| ||| ||||| || |||| | || |
Sbjct 1458 CTTATCTCGGGAGTTTTCCGGCAGT-GGCAGAGTAGATGTTCGTAAAACAATTTCTCAAA 1516
Query 1706 TCAAGGACGAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCA 1765
| || || ||||| |||||||||||||| || || |||||||| |||||| ||||||| |
Sbjct 1517 TTAAAGATGAGAAACTAGGGACCTCAGAAAAACCAGACTGGATTACAGTCAGTGCCACAA 1576
Query 1766 TT-TCATTCATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGAT 1824
|| | || ||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1577 TTAT-ATACATGAAGGTTGAAAACTTCTGCTACACAGCTTGTCCTATCATGAATGGTGAT 1635
Query 1825 CGTCCATGCAGCAAAAAGGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGT 1884
||||| ||||||||||| || || | || |||||||| |||||||| || || ||||||
Sbjct 1636 CGTCCGTGCAGCAAAAAAGTAACGGACAATGGAGATGGCACATGGCGGTGCGAAAAGTGT 1695
Query 1885 GACAAATGCGTGGATGAATGTGACTACAGGTATATATTACAGATCCAGTTACAGGACCAT 1944
|| ||| |||| |||||||||||||||||||||||| | ||| ||||| |||||||||||
Sbjct 1696 GATAAAAGCGTCGATGAATGTGACTACAGGTATATACTGCAGCTCCAGATACAGGACCAT 1755
Query 1945 ACAGACCTAACCTGGG-CAACTGCATTCCAAGAAGCTGGTGAAGAGATAATGGGAATGTC 2003
|| || || || |||| || | |||||||| || |||||||||||||||||||| || ||
Sbjct 1756 ACGGATCTTACTTGGGTCA-CAGCATTCCAGGAGGCTGGTGAAGAGATAATGGGCATATC 1814
Query 2004 TGCAAAAGATTTGTATTATGTGAAGTATGAAAATCAG-GATGAGGAGAAATTTGAAGATA 2062
||| ||||||||||||||||||||||||||| | || |||||||| ||||| |||||||
Sbjct 1815 TGCTAAAGATTTGTATTATGTGAAGTATGAACA-CAATGATGAGGAAAAATTCGAAGATA 1873
Query 2063 TCATCCGCA-GTGTCGCTTTTACTAAGTACATTTTCAAGCTGAAGATTAAAGAAGAAAC- 2120
||||||| | | || |||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 1874 TCATCCGTAAG-GTTGCTTTTACCAAGTACATCTTCAAGCTGAAGGTAAAAGAAGAAACA 1932
Query 2121 TTACAGCGATGAGCAGCGGGTTAAAGCAACAGTTGTGAAAGCTGAA-AAGCTGAATTATT 2179
|| |||||| || ||||| || ||||||||||||||||||| || | ||||| || ||||
Sbjct 1933 TT-CAGCGACGAACAGCGTGTGAAAGCAACAGTTGTGAAAG-TGGACAAGCTAAACTATT 1990
Query 2180 CTTCAAATACCAGGT-TCATGCTAGAGGCAATAGATAAACTCAAGA-TAGGAGATGCAAA 2237
| ||| |||||||| | || |||| || || |||||||||| || | ||||||||||
Sbjct 1991 CATCAGATACCAGGACT-ATTTTAGATGCCATGGATAAACTCAGGACT-GGAGATGCAAG 2048
Query 2238 TTCTCTC-CC-T-AT-A--AAGGCAGAGAGT-TC-CAATTACAG-GTCTGATGCATTTAA 2288
|||||| || | | | || ||||| || || || ||||| | |||||||| ||||
Sbjct 2049 TTCTCTTTCCATTAACATTAACGCAGA-AGGATCTCA-TTACAACG-CTGATGCAGTTAA 2105
Query 2289 TTCCGGTGTTGGAACCTCAGGAA-CT-AG-A----GACA-CCG-CATCAGTCGATGCACG 2339
| ||| | |||| |||||||| || || | || | || |||||||| | | |
Sbjct 2106 CACTGGTATAGGAAGCTCAGGAAGCTCAGGAACCAGAGATCCCTCATCAGTCCAA--A-G 2162
Query 2340 CAGAGAATTTG-GATTACCTGCAGCAAACCAAGTG-GGTCAATATGGAAATCAGTACAGT 2397
|| || ||| | |||| ||| || | || | ||||||| ||| ||||| || |||
Sbjct 2163 AAGGGA-TTTCAGTTTACATGCT-CAT-C-AA-TCAGGTCAATCTGGGAATCACTATAGT 2217
Query 2398 AGTGA-TGCAAGGTCTCTTGGCGGT--T--T--TACTAGCTGCAACGTGTGTCGCAGCAA 2450
|||| | | ||| ||| || ||| | | |||||||||||| || ||| | | ||
Sbjct 2218 AGTGGCT-CTAGGCCTCAAGGTGGTGATGCTACTACTAGCTGCAATGTCTGTGGAAACAG 2276
Query 2451 CAGCCATGTTTCTGCAAACTGCCCAACC-CTTATGAGTGAGCCACAAGGACAATACATGG 2509
| ||||||||||||||||| |||| || | || |||||| ||||| || |||||||
Sbjct 2277 TGGTCATGTTTCTGCAAACTGTCCAAGTGCT-ACGACTGAGCCGCAAGGGCAGTACATGG 2335
Query 2510 GTGGC 2514
|||||
Sbjct 2336 GTGGC 2340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96596861320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5