BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45420.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497312 jgi|Araly1|497312|fgenesh2_kg.185__3__AT5G45420.1 1646 0.0
> Ahg497312 jgi|Araly1|497312|fgenesh2_kg.185__3__AT5G45420.1
Length=1241
Score = 1646 bits (891), Expect = 0.0
Identities = 1120/1227 (91%), Gaps = 30/1227 (2%)
Strand=Plus/Plus
Query 2 GAGCAACAATGGATTTTTTCGACGAAGACAGGCCTAGATTCGTTTTCCAATCTCGTCCTT 61
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 GAGCAACAATGGAGTTTTTCGACGAAGATAGGCCTAGATTCGTCTTCCAATCTCGTCCTT 60
Query 62 CTTCTTCTCACACGGCGGAGGAAGAAGAAGAAGCTAGAATCCCTAACAAGCTTTTCATTT 121
|||||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 61 CTTCTTCTCACACGATGGAGGAAGAAGAAGAACCTAGAATCCCTAACAAGATCTTCATTT 120
Query 122 CAATCTCCGTCTCAATCTCCCTCATCATATTATCTCTCTCCTTCTTCTACTTCGAATCTG 181
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGATTTCCGTCTCAATCTCTCTCATCATATTATCTCTCTCCTTCTTCTACTTCGAATCTG 180
Query 182 AACCTGCCAAATCGCTACTATTATGGCTTTCCCTCTCTTTCCTCGTCGGTCCTTTCGCTC 241
| ||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||
Sbjct 181 AGCCTGCTAAATCGCTTCTCTTATGGCTTTCCCTCTCCTTCCTCGTTGGTCCTTTCGCTC 240
Query 242 CTAGCTCGCTCACCGGAGGTAAGATTCGCGTCGGTTATGGTCAGATCTTGGAGCCAGAAC 301
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTAGTTCGCTCACCGCAGGTAAGATTCGCGTCGGTTATGGTCAGATCTTGGAGCCAGAGC 300
Query 302 AGATTCACGATGAGTCATCCACGGATAACGAACGTGAATCCAGGAGGAAATCGGTGAATA 361
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 301 AGATTCACGATGAGTCATCGACGGATAACGAACGTGAATCGAGGAGAAAATCGGTGAATA 360
Query 362 AGCGATCTAAAGGTTCGACGAAGAGCGATAATCCGCCGGAAAATGCTTCTGCGGTGACTG 421
| ||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||| |
Sbjct 361 AACGATCTAAAGGAACGACGAAGAACGATAATCCACCGGAAAATGCTTCTTCGGTGACGG 420
Query 422 AAGTTTCGAGGAAAGTGGTGATTCCGCAGTCTAAGGAGAGTGGATCTGTGAATGAAACTA 481
| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 421 AGGTTTCGAGAAAAGTGGCGATTCCGCAGTCTAAAGAGAGTGGATCTGTGAATGAAACCA 480
Query 482 AAGATTGGACTGCT-GAAGAGATCGAGATTTTGAAGAAGCAGTTGATTAAGCATCCAGCT 540
||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AAGATTGGAGTG-TAGAAGAAATCGAGATTTTGAAGAAGCAGTTGATAAAGCATCCAGCT 539
Query 541 GGTAAACCTGGGAGATGGGAGACGGTGGCTTCAGCGTTCGGAGGAAGATACAAGACAGAG 600
||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 540 GGTAAGCCTGGGAGATGGGAAACGGTGGCTTCGGCGTTCGGAGGAAGGTACAAGACAGAG 599
Query 601 AATGTGATTAAGAAGGCGAAAGAGATAGGTGAGAAGAAAATCTATGAGAGTGATGATTAC 660
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 600 AATGTGATTAAGAAGGCGAAAGAGATTGGTGAAAAGAAAATCTATGAAAGTGATGATTAC 659
Query 661 GCTCAGTTTTTAAAGAATAGGAAAGCTTCAGATCCTAGATTGGTTGATGAAAACGAAGAG 720
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 660 GCACAGTTTTTGAAGAATAGGAAAGCTTCGGATCCTAGATTGGTTGATGAAAACGCTGAG 719
Query 721 AATTCTGGAGCTGGTGGAGATGCGGAAGGTACTAAGGAGATTTGGAGTAATGGAGAAGAC 780
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 720 AATTCTGGAGCTGGTGGAGATGAGGAAGGTAATAAGGAGATTTGGAGTAATGGAGAAGAC 779
Query 781 ATTGCATTGCTCAATGCTTTAAAAGCTTTTCCTAAGGAGGCAGCTATGAGATGGGAGAAG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 ATTGCATTGCTCAATGCTTTAAAAGCTTTTCCTAAGGAAGCAGCTATGAGATGGGAGAAG 839
Query 841 ATTGCAGCTGCAGTACCTGGGAAGTCGAAAGCAGCTTGTATGAAGAGAGTTACTGAGCTT 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 ATTGCAGCTGCAGTACCTGGGAAGTCGAAGGCAGCTTGTATGAAGAGAGTTACTGAGCTT 899
Query 901 AAAAAAGGGTTTCGGAGCTCGAAAACTCCAGCTAATTAACTAGAG-GACATCT-GTACGG 958
|||||||||||||||||||||||||||||||| ||||| |||||| | ||| || |
Sbjct 900 AAAAAAGGGTTTCGGAGCTCGAAAACTCCAGCCAATTAGCTAGAGAGG-ATCCAGT--GA 956
Query 959 GAT-TAAGGCAAATACCAGGAGAGGAAAAACAATTTTGTGTTTGCTGCTTGAGATTATTG 1017
|| || ||||||| |||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 957 GAAGTAGGGCAAATGCCAGGAGAGGGAGAACAATTTTGTGGTTGCTGCTTGAGATTATTG 1016
Query 1018 CTACAACGCCCAAA-GTAGTGAATAGAGTTCTGCAGGAAGTTTCTTTTAGAGAGAAGAAA 1076
|||||| ||||||| ||| |||| |||||| |||||||| |||||||||||||
Sbjct 1017 CTACAAGGCCCAAAAGTAATGAAGAGAGTTATGCAGGAAATTTCTTTTAGAGA------- 1069
Query 1077 AGAAAGCATCTCAATATGCCAAAGAATTTAACATAA--AG-TT-ATGAGTTCTTCTTTAC 1132
|||||||||||||||||| |||||||| || || ||||||||||||||||
Sbjct 1070 --------TCTCAATATGCCAAAGAAATTAACATATGTAGATTTATGAGTTCTTCTTTAC 1121
Query 1133 TTCAAGCTTTGATTCGAATTACAAGACTTGAGCATCTGTGTATCCCCTCCCCAAAGAGCA 1192
|||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1122 TTCAAGCTTTTATTCGAATTACAAGACTTGAGCATCTGTGTATCCTTTCCC-AGAGAGCA 1180
Query 1193 CCTATTTTATTACTAGGGAAATATATA 1219
||||||| |||||||||||||| ||||
Sbjct 1181 CCTATTT-ATTACTAGGGAAATTTATA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5