BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45428.1
Length=2625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948444 jgi|Araly1|948444|scaffold_800331.1 1585 0.0
Ahg492943 jgi|Araly1|492943|fgenesh2_kg.7__2376__AT4G19112.1 1153 0.0
Ahg951815 jgi|Araly1|951815|scaffold_18500001.1 366 4e-100
> Ahg948444 jgi|Araly1|948444|scaffold_800331.1
Length=1078
Score = 1585 bits (858), Expect = 0.0
Identities = 967/1019 (95%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 1355 CTGGTATAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 1414
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 CTGGTACAGGGCACCTGAAGTACTGCTACAATCATATGTATACACGTCAAAAGTTGATAT 106
Query 1415 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTTCGCCCTCTCTTTCCTGGAGC 1474
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 107 GTGGGCGATGGGTGCTATTATGGCGGAGCTGTTGTCTCTCCGCCCTCTCTTTCCTGGAGC 166
Query 1475 TAGTGAAGCGGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACCGAAGAGAC 1534
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 167 TAGTGAAGCAGATGAGATATACAAAATCTGCAGTGTCATAGGCAGCCCAACTGAAGAGAC 226
Query 1535 CTGGTTGGAGGGGCTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGTTTCCCGG 1594
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 227 ATGGTTGGAGGGGTTGAACCTTGCCAGCGTTATCAATTACCAATTCCCTCAGCTTCCCGG 286
Query 1595 TGTACATTTATCAAGTGTGATGCCATATGCTAGTGCGGATGCGGTTAACCTTATTGAGCG 1654
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 287 TGTACACCTATCAAGTGTGATGCCATATGCTAGTGCAGATGCGGTTAACCTTATTGAGCG 346
Query 1655 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTACAGCATCCGTT 1714
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 347 CCTTTGCTCGTGGGATCCCTGCAATAGACCGACTACTGCAGAGGCTCTGCAGCATCCGTT 406
Query 1715 CTTCCAAAGTTGCTACTATATTCCCCCATCTCTCCGTCCCAAGCTGTCTGA---ACCAAG 1771
|||||| |||||||||||| ||||||| |||||||| ||||||||||||| ||||||
Sbjct 407 CTTCCAGAGTTGCTACTATGTTCCCCCGTCTCTCCGACCCAAGCTGTCTGTTGGACCAAG 466
Query 1772 AGGGTCTCTCGAGCAGCAGCAATCCGTGAAGCGTTTACCAGCGGCTCCGACTTATAATGC 1831
| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 467 ACAGTCTCTCGAGCAGCAGCAATCCGTGAAGCGGTTACCAGCGGCTCTGACTTATAATGC 526
Query 1832 TAATAAGCCGTTGAACACCTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 1891
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TAATAAGCCGTTGAACTCTTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGT 586
Query 1892 CAACAGTTATGTTACTCCAAAGACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGT 1951
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 587 CAACAGTTATGTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGT 646
Query 1952 TACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCCAAAGAT 2011
| || |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 647 TGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGAC 706
Query 2012 GAATGCTCCTTTTGACAATGGTGCGACCCAGCAGAAGGTGGATACGACTAATAATAATAA 2071
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 707 GAATGCTCCTTTTGACAATGGTGCGACCCAGCGGAAGGTGGATATGGCTAATAATAATAA 766
Query 2072 CCAGAACACGGCGTGGAACAACAAACCTGTGAGAAGTTATAACGTTAAAGATTCAAAGTA 2131
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 767 CCAGAACACGGCGTGGAACAACAAGCCTGTGAGAAGTTATAACGTTAAAGATGCAAAGTA 826
Query 2132 TAGACCACCGGGAAGGAAGAGTCCACTTGCAGCATCTATGGAAAAGAACTGGGTCTTTTC 2191
||||||||| |||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 827 TAGACCACCCGGAAGGAAGAGTCC--T--C--CATCTATGGAAAAGAACTGGGTCTTTGC 880
Query 2192 CCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATTGGAGGAAGATGGAC 2251
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 881 TCGTGGAGCATCAGAGACTGCAAATAAACTGGCAAATGCAACAATCGGAGGAAGATGGAC 940
Query 2252 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TCAAAGTCAAAGGCAACAACAACCGGCGATGAAGGCAGGGTGGGTGGGAGAAAGTGGTGA 1000
Query 2312 CATGTTCCTCAGACCTACACAGCCTTCCAATCCCTACTCTAGGAAAATCGCCGGTTAAG 2370
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1001 CATGTTCCTAAGACCTACACAGCCTTCAAATCCCTACTCTAGGAAAATCGCCGGTTAAG 1059
Score = 196 bits (106), Expect = 5e-49
Identities = 125/134 (93%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 GTTGCTCCAAAGACGAAGGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCCAAAG 656
Query 1914 ACAAATGCTCCATTTAGCAATGGTGTCAACAGTTATGTTACTGCAAAGACGAATGCTCCT 1973
|| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 ACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAGACGAATGCTCCT 716
Query 1974 TTT-AGCAATGGTG 1986
||| | ||||||||
Sbjct 717 TTTGA-CAATGGTG 729
Score = 126 bits (68), Expect = 7e-28
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1946 TTATGTTACTGCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAATTATGTTGCTCC 2005
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 TTACGTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTGCTCC 604
Query 2006 AAAGATGAATGCTCCTTTT-GACAATGGTG 2034
||||| ||| ||||||||| | ||||||||
Sbjct 605 AAAGACGAAGGCTCCTTTTAG-CAATGGTG 633
Score = 124 bits (67), Expect = 3e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1854 GTTACTCCAAAGACGAATGCTCCTTTTAGCAATGGTGTCAACAGTTATGTTACTCCAAAG 1913
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 645 GTTGCTCCAAAGACGAATGCTCCTTTTGGCAATGGTGTCAACAGTTATGTTACTCCAAAG 704
Query 1914 ACAAATGCTCCATTT-AGCAATGGTG 1938
|| |||||||| ||| | ||||||||
Sbjct 705 ACGAATGCTCCTTTTGA-CAATGGTG 729
Score = 87.9 bits (47), Expect = 3e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1256 AAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 1305
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCTATTGGTCTCAAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG 50
> Ahg492943 jgi|Araly1|492943|fgenesh2_kg.7__2376__AT4G19112.1
Length=2486
Score = 1153 bits (624), Expect = 0.0
Identities = 1114/1340 (83%), Gaps = 76/1340 (6%)
Strand=Plus/Plus
Query 461 TTGGTCCT-TCTTCCATATCCTGTTCTTATGAGAGCTTGTTGAAGAAGGATGA-ATCAG- 517
||| |||| |||| |||||| |||||||||| | ||| ||||||||| ||| | |||||
Sbjct 519 TTGTTCCTCTCTTTCATATCTTGTTCTTATGGGTGCTGGTTGAAGAAAGAT-ACATCAGT 577
Query 518 ttt-tttttCAAGTTATGACTTTTCTTAGCTGTGTCTTTTCCTCGAGTCTCTGAACCCCT 576
||| ||||||||||| | | | || |||| |||||| ||| ||||||||||
Sbjct 578 TTTCTTTTTCAAGTT-T-A-----CATA--TGTG--GTTTCCTTGAG--TCTGAACCCC- 623
Query 577 TGAGTGAAATGTTGTGAGCATAAGTTTCGTCC-AGCTACCCAGA-ACATTACTTT-TTGT 633
||||||| |||||||||||||| | | | ||| | || ||| | ||||| |||| ||||
Sbjct 624 TGAGTGAGATGTTGTGAGCATAGGGTCCTTCCTA-TTAGCCA-ACACATT-CTTTCTTGT 680
Query 634 TAG-----TGCGTCTTCCAATTCTCAGTATGT-TTTGTCTTTTTCTCTTAGC-GTCTTTC 686
| | |||||||| | |||||||||||| ||| || | ||||||| || |||||||
Sbjct 681 TGGTTCCTTGCGTCTTTGAGTTCTCAGTATGTGTTT-TCCTCTTCTCTT-GCTGTCTTTC 738
Query 687 TTTTGCCTTGTTGGTCAACCCATTGATGTTCAAACTTCAAAGTAAATAAGGGTCAGTCTA 746
||||||||| |||||||||| | | || | | |||||||||||| ||||||||||
Sbjct 739 TTTTGCCTTAATGGTCAACCC---G-T-TT--ATGTGCAAAGTAAATAACGGTCAGTCTA 791
Query 747 CCCAGCGGGAGAATCATTG-----A-T--CTTGCTG-C-----C---ATACGAACAACTG 789
|||||| |||||||||||| | | |||| || | | ||||||| ||||
Sbjct 792 CCCAGCTGGAGAATCATTGATTTTACTGCCTTGGTGTCAAGTACTTGCTACGAACGACTG 851
Query 790 GAAGATTAAAG-TGATAGACATATTTCAGAAGTTCTTTACAGAGA-AATACT-T-AAGGG 845
||||||||| | | ||| | || |||||||||||||||||| | | |||| | | ||| |
Sbjct 852 GAAGATTAATGCT-ATATAAATCTTTCAGAAGTTCTTTACATACAGAATAATATAAAGAG 910
Query 846 GATACTTTGCTTCACC-TAGAGGCGATGGAGAGGTATACA-TTACTCAAAGAAGTTGGTG 903
| |||||||||| ||| | | ||||||| ||||| | | ||| | ||||| |||||||
Sbjct 911 GCTACTTTGCTTTACCGGAAAAACGATGGACAGGTACA-AGTTAATTAAAGAGGTTGGTG 969
Query 904 ACGGAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTGTGGCAA 963
| ||||| ||||| | ||||||||||||| | ||||| |||||| |||||| || ||||
Sbjct 970 ATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGACGGGTGAAGTCGTTGCAA 1029
Query 964 TTAA-AAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGAATCTAAGAGAAGTG 1022
|||| || |||||| |||||||| | ||||||||| || ||| | ||||| |||||||||
Sbjct 1030 TTAAGAA-AATGAAAAAGAAGTACTACTCTTGGGACGAATGTATTAATCTGAGAGAAGTG 1088
Query 1023 AAGTCACTTAGCAGAATGAATCATCCAAACATTGTGAAGCTGAAGGAAGTCATCCGGGAA 1082
||||| || || |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1089 AAGTCGCTCAGGAGAATGAATCATCCAAACATCGTGAAGTTGAAGGAAGTCATCCGGGAA 1148
Query 1083 AATGATATCCTATACTTTGTGTTTGAGTACATGGAGTGCAATCTTTACCAGCTTATGAAG 1142
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AATGATATCCTATACTTTGTCTTTGAGTACATGGAGTGCAATCTTTACCAGCTTATGAAG 1208
Query 1143 GATCGCCCTAAGCATTTTGCAGAATCTGATATCCGAAATTGGTGCTTCCAGGTCTTCCAA 1202
||||| | |||| |||||||||| |||||||| ||||||||||||| || |||||||||
Sbjct 1209 GATCGACAAAAGCTTTTTGCAGAAGCTGATATCAGAAATTGGTGCTTTCAAGTCTTCCAA 1268
Query 1203 GGCCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAGAAAATCTA 1262
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1269 GGCCTTTCTTACATGCATCAGCGTGGTTACTTCCACCGCGATCTTAAGCCAGAAAATCTG 1328
Query 1263 TTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGGCCCGGGAGATCGACTCG 1322
|| ||||| ||||| ||||||||||||||||| ||||||||||||||||| | | |||
Sbjct 1329 TTAGTCTCTAAAGACATCATTAAGATTGCTGATTTTGGCCTGGCCCGGGAGGTTAATTCG 1388
Query 1323 AGTCCACCTTATACAGAATATGTCTCTACACGCTGGTATAGGGCACCTGAAGTACTGCTA 1382
|||||||||| ||| || ||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 1389 AGTCCACCTTTTACCGAGTATGTTTCTACACGCTGGTACAGGGCTCCTGAAGTACTCCTA 1448
Query 1383 CAATCATATGTATACACGTCAAAAGTTGATATGTGGGCGATGGGTGCTATTATGGCGGAG 1442
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1449 CAATCATATGTATACACATCAAAAGTTGATATGTGGGCGATGGGAGCTATTATGGCTGAG 1508
Query 1443 CTGTTGTCTCTTCGCCCTCTCTTTCCTGGAGCTAGTGAAGCGGATGAGATATACAAAATC 1502
|||||||||||||||| | |||||||| ||||||||||| ||||| || |||||||||
Sbjct 1509 TTGTTGTCTCTTCGCCCAATTTTTCCTGGGGCTAGTGAAGCAGATGAAATCTACAAAATC 1568
Query 1503 TGCAGTGTCATAGGCAGCCCAACCGAAGAGACCTGGTTGGAGGGGCTGAACCTTGCCAGC 1562
|||||||||||||||| |||||| || ||||||||||||||||| || || ||||| | |
Sbjct 1569 TGCAGTGTCATAGGCACCCCAACTGAGGAGACCTGGTTGGAGGGACTTAATCTTGCTAAC 1628
Query 1563 GTTATCAATTACCAATTCCCTCAGTTTCCCGGTGTACAT-TTATCAAG-TGTGATGCCAT 1620
||| || || |||||||||||| |||| ||||||| | || ||||| | |||||||||
Sbjct 1629 AATATAAACTATCAATTCCCTCAGCTTCCTGGTGTACCTCTT-TCAAGCT-TGATGCCAT 1686
Query 1621 ATGCTAGTGCGGATGCGGTTAACCTTATTGAGCGCCTTTGCTCGTGGGATCCCTGCAATA 1680
|||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||| |
Sbjct 1687 CTGCTAGTGAAGATGCAATTAATCTTATTGAGCGGCTTTGCTCGTGGGATCCATGCAGCA 1746
Query 1681 GACCGACTACTGCAGAGGCT-CTACAGCATCCGTTCTTCCAAAGTTGCTACTATATTCCC 1739
|||||||| |||| |||| | || ||||||||||||||||| ||||||| ||| | |||
Sbjct 1747 GACCGACTGCTGCTGAGG-TGCTGCAGCATCCGTTCTTCCAGAGTTGCTTTTATGT-CCC 1804
Query 1740 -CCATCTCTCCGTCCCAAGC 1758
|||||||| ||||||||||
Sbjct 1805 ACCATCTCTTCGTCCCAAGC 1824
> Ahg951815 jgi|Araly1|951815|scaffold_18500001.1
Length=261
Score = 366 bits (198), Expect = 4e-100
Identities = 208/213 (98%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 111 TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTAGATTAAGCT 170
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTCTTCCCGTCGTCGGAGACGGAGTTTATGCCTATTGGCTCCTGAGGTTATATTAAGCT 60
Query 171 TCGTATTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGGTG 230
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCGTTTTTAGTGGATTTTCTTCTTTTGAGATATGGAACAAGATTACATCTGCTCAGGCTG 120
Query 231 CTACCAGTATCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC 290
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACCAGTGTCGAGTTTTTTCATTGCAAGAAGCACTCGATTGGCGGTTTCTTGTGCACTC 180
Query 291 AGATTTCCTTATCGGCTCTTTCGTGAACTGCAC 323
|||||||||||| ||||||||||||||||||||
Sbjct 181 AGATTTCCTTATTGGCTCTTTCGTGAACTGCAC 213
Score = 75.0 bits (40), Expect = 3e-12
Identities = 45/47 (96%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 541 CTTAGCTGTGTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG 587
|||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 213 CTTA-CTGTCTCTTTTCCTCGAGTCTCTGAACCCCTTGAGTGAAATG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98996546755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5