BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45440.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948429 jgi|Araly1|948429|scaffold_800316.1 889 0.0
Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1 695 0.0
Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311 529 2e-149
> Ahg948429 jgi|Araly1|948429|scaffold_800316.1
Length=1105
Score = 889 bits (481), Expect = 0.0
Identities = 738/858 (86%), Gaps = 34/858 (4%)
Strand=Plus/Plus
Query 210 GAGGATCGTGTGGAAACTGATTCTGGACTTCCAGG-TCATGATATCTATGGTTTCGAGAA 268
||||| ||| || |||| || ||| |||||| || ||||| ||| | |||||||| ||
Sbjct 159 GAGGAGCGTCTGAAAACCGACTCTAAACTTCC-GGACCATGACATCCACGGTTTCGATAA 217
Query 269 TGAGATCAAATCATTGCAACACTTCTTGTTGGATCAAAAGTCTTACAA-GCTGTTCAAGA 327
|||||||| ||||| |||||||||||||||||||| ||| ||| || | ||||||||
Sbjct 218 CGAGATCAAGTCATTACAACACTTCTTGTTGGATCAGAAG-GTTAAAAGGGAGTTCAAGA 276
Query 328 GTCTTGTGGTTGTCGGAGAATACGGTGTTGGGAAGACAGCATTATGCCAGCAGATCTTCA 387
|||||||| |||| ||||| || ||||||||||||||||||||||||||| ||||||| |
Sbjct 277 GTCTTGTGATTGTAGGAGAGTATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTTA 336
Query 388 ATGATTATGATGTGAGGAATGCTTATGC-CCCGAGGATTTGGGTATCTAT-GCATAGCAA 445
||||| | | ||| | || || |||||| ||| ||| ||||||| ||||| || ||||||
Sbjct 337 ATGATGAAGCTGTCAAGAGTGTTTATGCTCCC-AGGGTTTGGGTTTCTATGGC-TAGCAA 394
Query 446 TGAATCTAAGGAGGGACTTGATGGGAAGATATGTGTGTTGAAGACGATCTTGA-AGGGTC 504
||||||| ||||| |||| ||||||||||||| |||||||||| |||||||| | ||||
Sbjct 395 GGAATCTACGGAGGAACTTAATGGGAAGATATGCGTGTTGAAGAAGATCTTGACA-GGTC 453
Query 505 TTGGAGTTGAAGAGTCAATGTTCG--A--A--TC--C--AT-CCATA-GAGAA-GT-AGT 550
|||||||| |||| || || ||| | | || | || ||| | |||| | ||
Sbjct 454 TTGGAGTTAAAGATTCCATCCTCGAAACTATCTCTGCTGATGCCAAACAAGAATTTAAGG 513
Query 551 AGAA----GAAGTTTCAAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAG 606
| || |||||| ||| || ||||||||||||||||||||| ||||||||| ||||
Sbjct 514 ACAATGCGGAAGTTGCAAGCAATCAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAG 573
Query 607 AGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 666
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 AGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 633
Query 667 TGATTGTGTTTGATGATGTCCAGGAGATCGATAACTGGGACGAGAAACTCGATGCGAAAC 726
||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||
Sbjct 634 TGATTGTGTTTGATGATGTCCGGGAAATTGATAACTGGGACGAGAAGCTCGATGTGAAAC 693
Query 727 TCAACGAGGGTGAAAAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 786
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 694 TCAACGAGGATGAGAAATGGGGAAAGTTTCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 753
Query 787 GGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAACCTTGTTGT-TCAGAAA 845
|||| |||||||||||||||||||||||||||||||||||||| || ||| | || ||||
Sbjct 754 GGAGAGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAAGCTAGTT-TCTCGGAAA 812
Query 846 CATGAGATCCATCGTCTTTGGCCGCTATCTGATTC-TAACAGTGTTTGGAAGATATATGA 904
|||||||||||||||||||||||||| |||||| | | | ||||| ||||||||||||||
Sbjct 813 CATGAGATCCATCGTCTTTGGCCGCTGTCTGAT-CATCAGAGTGTCTGGAAGATATATGA 871
Query 905 AGCAATGATCCAGAAGAGAGAGAAAGAGTCTCCAAGGAACGACAAGAAATGTATAGATGA 964
|| |||| || ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 872 TGCTGTGATTCAAAAGAGAGAGAAAGAGTCACCAAGGAACGACAAGAAATGCATAGATGA 931
Query 965 GCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACTGTTGGCTGAGCTTGATCC 1024
||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 932 GCTAATGAACAAGTCTCGTGGTCTTCCTTTGGCTGCTAGACTGTTGGCCGAGCTTGATCC 991
Query 1025 CATGTT-GTTTGACGATG 1041
| |||| ||| |||||||
Sbjct 992 CGTGTTTGTT-GACGATG 1008
> Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1
Length=1061
Score = 695 bits (376), Expect = 0.0
Identities = 459/499 (92%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 62 ttttttttGTTCCAGCTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGCGGATTAAC 121
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTTTTTTTGTTCCAACTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGTGGATTAAC 60
Query 122 AAGTGTAGGCAGAGTTGACTTCACAAATCGGTTCGCTGATAGATACAACGAATGGCTAGG 181
||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 61 AAGTGTAGGCAGAAACGACTTCACACATCGGTTCGCTGATAGATACAAGGAATGGTTAAG 120
Query 182 GACAACTGGTGACGAAACAAAACAGGTGGAGGATCGTGTGGAAACTGATTCTGGACTTCC 241
|||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 121 GACAACTGGTGAAGAAACAAAACAGGAGGAGGATCGTGTGGAAACTAATTCTGAACTTCC 180
Query 242 AGG-TCATGATATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 300
|| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 -GGCTTATGAAATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 239
Query 301 ATCAAAAG-TCTTACAAGCTGTTCAAGAGTCTTGTGGTTGTCGGAGAATACGGTGTTGGG 359
|||||||| | ||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 240 ATCAAAAGGT-TTACAAGGAGTTCAAGAGTCTTGTGATTGTCGGAGAACACGGTGTTGGG 298
Query 360 AAGACAGCATTATGCCAGCAGATCTTCAATGATTATGATGTGAGGAATGCTTATGCCCCG 419
|||||||||||||||||| |||||||||||||||||||||| | || || |||||||||
Sbjct 299 AAGACAGCATTATGCCAGAAGATCTTCAATGATTATGATGTTAAGAGTGTTTATGCCCC- 357
Query 420 A-GGATTTGGGTATCTATGCATAGCAATGAATCTAAGGAGGGACTTGATGGGAAGATATG 478
| |||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 358 ATGGATTTGGGTTTCCATGCTTAGCAATGAATCTAAGGAGGGACTTGATGGGAAAATATG 417
Query 479 TGTGTTGAAGACGATCTTGAAGGGTCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCA 538
||||||||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||
Sbjct 418 TGTGTTGAAGAAGATCTTGAAGGCTCTCGGAGTTGAAGATTCGATGTTCGAATCCATCCG 477
Query 539 TAGAGAAGTAGTAGAAGAA 557
|||||||||||||||||||
Sbjct 478 TAGAGAAGTAGTAGAAGAA 496
Score = 579 bits (313), Expect = 2e-164
Identities = 492/573 (86%), Gaps = 33/573 (6%)
Strand=Plus/Plus
Query 593 AGAGACGGCTAAAGAGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 652
||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 493 AGAAACAGCGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 552
Query 653 GTGGAAGAAGTATC-TGATTGTGTTTGATGATGT-CCAGGAGATCGATAACTGGGACGAG 710
|||||||||||| | ||||||||||||||||||| | || ||| ||||| ||| |||||
Sbjct 553 GTGGAAGAAGTA-CATGATTGTGTTTGATGATGTGCGAGAAGA-GGATAATTGGAACGAG 610
Query 711 AAAC-TCGATGCGAAACTCAACGAGGGTGAA-AAATGGGGAAAGTATCTTTCAGATGGAT 768
| | || | | | | | || || ||| |||||||||||||||||||||||||||
Sbjct 611 ATGCTTC-A-G-G--A--CGGTGA-GGAGAAGCAATGGGGAAAGTATCTTTCAGATGGAT 662
Query 769 TCCCTAAAGGGTCTGGTGGGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGA 828
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 663 TCCCTACAGGATCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAATCTAGCGAAGA 722
Query 829 ACCTT-GTTGTTCAGAAACATGAGATCCATCGTCTTTGGCCGCTATCTGATTCTAACAGT 887
| || |||| ||||||||||||| ||| ||||||||||||| ||||||||| |||||
Sbjct 723 A-ATTAGTTGCAGAGAAACATGAGATTCATTGTCTTTGGCCGCTGTCTGATTCTTACAGT 781
Query 888 GTTTGGAAGATATATGAAGCAATGATC-CAGAAGAGAGAGAAAGAGTCTCCAAGGAACGA 946
|||||||||||||| |||||||| ||| | ||||||||||||||| |||||||||||||
Sbjct 782 GTTTGGAAGATATACGAAGCAATTATCTTA-AAGAGAGAGAAAGAGCCTCCAAGGAACGA 840
Query 947 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 900
Query 1007 GTTGGCTGAGCTTGATCCCATGTTGTTTGACGATGGAAAGGCTAACCAGAACGGTTCTAA 1066
| ||||| | |||||||| ||||| |||| ||| ||| ||| ||||||||||||||||
Sbjct 901 GCTGGCTAAACTTGATCCTGTGTTGCTTGAAAATGAAAAAGCTGACCAGAACGGTTCTAA 960
Query 1067 AGATGGAAAAACCGACTCAGTCGACAACCCCAATTCAGAAGAGAGTAAAACTA---AACC 1123
| | | |||||| ||||||||| ||||||||||| |||||||| ||||
Sbjct 961 C--T--A----C----TCAGTCAACAACCCCACTTCAGAAGAGAATAAAACTACTCAACC 1008
Query 1124 TCTGTAGACTTTAGAAGATTGAAGAGCCCTTTT 1156
||||||||||||||||||||| |||||||||||
Sbjct 1009 TCTGTAGACTTTAGAAGATTGCAGAGCCCTTTT 1041
> Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311
Length=852
Score = 529 bits (286), Expect = 2e-149
Identities = 510/615 (83%), Gaps = 28/615 (5%)
Strand=Plus/Plus
Query 503 TCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCATAGAGAAGTAGTAGAAGAAGTTTC 562
||| ||||||||||| || |||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 249 TCTCGGAGTTGAAGATTCGATGTTCGAATTCATCCGTAGCGAAGTAGTAGAAGAAGCTTC 308
Query 563 AAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAGAGAAGGAGATCTCTGC 622
||| |||| ||||||||||||||||||||||||||| || |||||||||||| | ||||
Sbjct 309 AAAGAGGCGGGAAGCTGGAGAAATTGATGGAGAGACAGCGAAAGAGAAGGAGTTTTCTGT 368
Query 623 TCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGA 682
| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 TTTGCTCTATGCACTGCATTTGAATCTGAGGTGGAAGAAGTATCTGATTGTATTTGATGA 428
Query 683 TGTCC-AGGA-GATCGATAACTGGGACGAGAAACTCGATGCGAAACTCAACGAGGGTGAA 740
||| | || | || || || ||||| ||||| ||||||| |||| |||| ||||||||
Sbjct 429 TGTGCGAG-ACGAG-GACAATTGGGATGAGAAGCTCGATGTGAAATTCAAGGAGGGTGAG 486
Query 741 AAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGGGTCATATAC 800
|||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 487 AAATGGGGGAAGCATCTTTCAGATGGATTCCCTAAAGAGTCTGGTGGGAGAGTCATATAC 546
Query 801 ACGACCAGAGATGAGAATCTGGCGA-AGAACCTTGTTGTTCAGAA-A-CATGAGATCCAT 857
|||||||| || |||| ||||| | |||| || |||| ||||| | |||||||| |||
Sbjct 547 ACGACCAGGGAAAAGAAACTGGC-ACAGAAGCTAGTTG--CAGAAGAACATGAGATACAT 603
Query 858 CGTCTTTGGCCGCT-ATCTGATTCTAACAGTGTTTGGAAGATATATGAAGCAATGATCCA 916
||||||||||| | | ||||| || | ||||| ||||| |||||| ||| || | |
Sbjct 604 CGTCTTTGGCCTTTGA-CTGATACTGAGAGTGTCTGGAACATATATAAAG-AA-GCGCTG 660
Query 917 GAAGAGA--GA-GAAAGAGTCTCCAAGGAACGACAAGAAATG-TATAGATGAGCTGATGA 972
||||||| || ||| ||| |||||||||||||||||||||| | || |||||||||||
Sbjct 661 GAAGAGAATGAAGAA-GAGCCTCCAAGGAACGACAAGAAATGCTC-AGTTGAGCTGATGA 718
Query 973 ACAAGTCTCGTGGTCTTCCTCTG-GCTGCTAGACTGTTGGCTGA-GCTTGATCCCATGTT 1030
||||||||||||||||||| || || ||||||| |||||| | |||| |||| ||||
Sbjct 719 ACAAGTCTCGTGGTCTTCC-CTTAGCCGCTAGACAGTTGGCC-ACGCTTCTTCCCGTGTT 776
Query 1031 G-TTTGACGATGGAAAGGCTAACCAGAACGGTTCTAAAGATGGAAAAA-CCGACTCAGTC 1088
||| ||| || ||| ||| ||||||| |||| || ||| || | || |||||| |
Sbjct 777 TCTTT-ACGTTGAAAAAGCTGACCAGAAAGGTTATACCCATG-AACCAGCCAACTCAGCC 834
Query 1089 GACAACCCCAATTCA 1103
||||||||| ||||
Sbjct 835 AACAACCCCACTTCA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5