BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45440.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg948429 jgi|Araly1|948429|scaffold_800316.1 889 0.0 Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1 695 0.0 Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311 529 2e-149 > Ahg948429 jgi|Araly1|948429|scaffold_800316.1 Length=1105 Score = 889 bits (481), Expect = 0.0 Identities = 738/858 (86%), Gaps = 34/858 (4%) Strand=Plus/Plus Query 210 GAGGATCGTGTGGAAACTGATTCTGGACTTCCAGG-TCATGATATCTATGGTTTCGAGAA 268 ||||| ||| || |||| || ||| |||||| || ||||| ||| | |||||||| || Sbjct 159 GAGGAGCGTCTGAAAACCGACTCTAAACTTCC-GGACCATGACATCCACGGTTTCGATAA 217 Query 269 TGAGATCAAATCATTGCAACACTTCTTGTTGGATCAAAAGTCTTACAA-GCTGTTCAAGA 327 |||||||| ||||| |||||||||||||||||||| ||| ||| || | |||||||| Sbjct 218 CGAGATCAAGTCATTACAACACTTCTTGTTGGATCAGAAG-GTTAAAAGGGAGTTCAAGA 276 Query 328 GTCTTGTGGTTGTCGGAGAATACGGTGTTGGGAAGACAGCATTATGCCAGCAGATCTTCA 387 |||||||| |||| ||||| || ||||||||||||||||||||||||||| ||||||| | Sbjct 277 GTCTTGTGATTGTAGGAGAGTATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTTA 336 Query 388 ATGATTATGATGTGAGGAATGCTTATGC-CCCGAGGATTTGGGTATCTAT-GCATAGCAA 445 ||||| | | ||| | || || |||||| ||| ||| ||||||| ||||| || |||||| Sbjct 337 ATGATGAAGCTGTCAAGAGTGTTTATGCTCCC-AGGGTTTGGGTTTCTATGGC-TAGCAA 394 Query 446 TGAATCTAAGGAGGGACTTGATGGGAAGATATGTGTGTTGAAGACGATCTTGA-AGGGTC 504 ||||||| ||||| |||| ||||||||||||| |||||||||| |||||||| | |||| Sbjct 395 GGAATCTACGGAGGAACTTAATGGGAAGATATGCGTGTTGAAGAAGATCTTGACA-GGTC 453 Query 505 TTGGAGTTGAAGAGTCAATGTTCG--A--A--TC--C--AT-CCATA-GAGAA-GT-AGT 550 |||||||| |||| || || ||| | | || | || ||| | |||| | || Sbjct 454 TTGGAGTTAAAGATTCCATCCTCGAAACTATCTCTGCTGATGCCAAACAAGAATTTAAGG 513 Query 551 AGAA----GAAGTTTCAAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAG 606 | || |||||| ||| || ||||||||||||||||||||| ||||||||| |||| Sbjct 514 ACAATGCGGAAGTTGCAAGCAATCAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAG 573 Query 607 AGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 666 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 AGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATC 633 Query 667 TGATTGTGTTTGATGATGTCCAGGAGATCGATAACTGGGACGAGAAACTCGATGCGAAAC 726 ||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| ||||| Sbjct 634 TGATTGTGTTTGATGATGTCCGGGAAATTGATAACTGGGACGAGAAGCTCGATGTGAAAC 693 Query 727 TCAACGAGGGTGAAAAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 786 ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 694 TCAACGAGGATGAGAAATGGGGAAAGTTTCTTTCAGATGGATTCCCTAAAGGGTCTGGTG 753 Query 787 GGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAACCTTGTTGT-TCAGAAA 845 |||| |||||||||||||||||||||||||||||||||||||| || ||| | || |||| Sbjct 754 GGAGAGTCATATACACGACCAGAGATGAGAATCTGGCGAAGAAGCTAGTT-TCTCGGAAA 812 Query 846 CATGAGATCCATCGTCTTTGGCCGCTATCTGATTC-TAACAGTGTTTGGAAGATATATGA 904 |||||||||||||||||||||||||| |||||| | | | ||||| |||||||||||||| Sbjct 813 CATGAGATCCATCGTCTTTGGCCGCTGTCTGAT-CATCAGAGTGTCTGGAAGATATATGA 871 Query 905 AGCAATGATCCAGAAGAGAGAGAAAGAGTCTCCAAGGAACGACAAGAAATGTATAGATGA 964 || |||| || ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 872 TGCTGTGATTCAAAAGAGAGAGAAAGAGTCACCAAGGAACGACAAGAAATGCATAGATGA 931 Query 965 GCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACTGTTGGCTGAGCTTGATCC 1024 ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 932 GCTAATGAACAAGTCTCGTGGTCTTCCTTTGGCTGCTAGACTGTTGGCCGAGCTTGATCC 991 Query 1025 CATGTT-GTTTGACGATG 1041 | |||| ||| ||||||| Sbjct 992 CGTGTTTGTT-GACGATG 1008 > Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1 Length=1061 Score = 695 bits (376), Expect = 0.0 Identities = 459/499 (92%), Gaps = 6/499 (1%) Strand=Plus/Plus Query 62 ttttttttGTTCCAGCTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGCGGATTAAC 121 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 TTTTTTTTGTTCCAACTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGTGGATTAAC 60 Query 122 AAGTGTAGGCAGAGTTGACTTCACAAATCGGTTCGCTGATAGATACAACGAATGGCTAGG 181 ||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || | Sbjct 61 AAGTGTAGGCAGAAACGACTTCACACATCGGTTCGCTGATAGATACAAGGAATGGTTAAG 120 Query 182 GACAACTGGTGACGAAACAAAACAGGTGGAGGATCGTGTGGAAACTGATTCTGGACTTCC 241 |||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||| Sbjct 121 GACAACTGGTGAAGAAACAAAACAGGAGGAGGATCGTGTGGAAACTAATTCTGAACTTCC 180 Query 242 AGG-TCATGATATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 300 || | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 -GGCTTATGAAATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 239 Query 301 ATCAAAAG-TCTTACAAGCTGTTCAAGAGTCTTGTGGTTGTCGGAGAATACGGTGTTGGG 359 |||||||| | ||||||| |||||||||||||||| ||||||||||| ||||||||||| Sbjct 240 ATCAAAAGGT-TTACAAGGAGTTCAAGAGTCTTGTGATTGTCGGAGAACACGGTGTTGGG 298 Query 360 AAGACAGCATTATGCCAGCAGATCTTCAATGATTATGATGTGAGGAATGCTTATGCCCCG 419 |||||||||||||||||| |||||||||||||||||||||| | || || ||||||||| Sbjct 299 AAGACAGCATTATGCCAGAAGATCTTCAATGATTATGATGTTAAGAGTGTTTATGCCCC- 357 Query 420 A-GGATTTGGGTATCTATGCATAGCAATGAATCTAAGGAGGGACTTGATGGGAAGATATG 478 | |||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 358 ATGGATTTGGGTTTCCATGCTTAGCAATGAATCTAAGGAGGGACTTGATGGGAAAATATG 417 Query 479 TGTGTTGAAGACGATCTTGAAGGGTCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCA 538 ||||||||||| ||||||||||| ||| ||||||||||| || |||||||||||||||| Sbjct 418 TGTGTTGAAGAAGATCTTGAAGGCTCTCGGAGTTGAAGATTCGATGTTCGAATCCATCCG 477 Query 539 TAGAGAAGTAGTAGAAGAA 557 ||||||||||||||||||| Sbjct 478 TAGAGAAGTAGTAGAAGAA 496 Score = 579 bits (313), Expect = 2e-164 Identities = 492/573 (86%), Gaps = 33/573 (6%) Strand=Plus/Plus Query 593 AGAGACGGCTAAAGAGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 652 ||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 493 AGAAACAGCGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 552 Query 653 GTGGAAGAAGTATC-TGATTGTGTTTGATGATGT-CCAGGAGATCGATAACTGGGACGAG 710 |||||||||||| | ||||||||||||||||||| | || ||| ||||| ||| ||||| Sbjct 553 GTGGAAGAAGTA-CATGATTGTGTTTGATGATGTGCGAGAAGA-GGATAATTGGAACGAG 610 Query 711 AAAC-TCGATGCGAAACTCAACGAGGGTGAA-AAATGGGGAAAGTATCTTTCAGATGGAT 768 | | || | | | | | || || ||| ||||||||||||||||||||||||||| Sbjct 611 ATGCTTC-A-G-G--A--CGGTGA-GGAGAAGCAATGGGGAAAGTATCTTTCAGATGGAT 662 Query 769 TCCCTAAAGGGTCTGGTGGGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGA 828 |||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 663 TCCCTACAGGATCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAATCTAGCGAAGA 722 Query 829 ACCTT-GTTGTTCAGAAACATGAGATCCATCGTCTTTGGCCGCTATCTGATTCTAACAGT 887 | || |||| ||||||||||||| ||| ||||||||||||| ||||||||| ||||| Sbjct 723 A-ATTAGTTGCAGAGAAACATGAGATTCATTGTCTTTGGCCGCTGTCTGATTCTTACAGT 781 Query 888 GTTTGGAAGATATATGAAGCAATGATC-CAGAAGAGAGAGAAAGAGTCTCCAAGGAACGA 946 |||||||||||||| |||||||| ||| | ||||||||||||||| ||||||||||||| Sbjct 782 GTTTGGAAGATATACGAAGCAATTATCTTA-AAGAGAGAGAAAGAGCCTCCAAGGAACGA 840 Query 947 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 900 Query 1007 GTTGGCTGAGCTTGATCCCATGTTGTTTGACGATGGAAAGGCTAACCAGAACGGTTCTAA 1066 | ||||| | |||||||| ||||| |||| ||| ||| ||| |||||||||||||||| Sbjct 901 GCTGGCTAAACTTGATCCTGTGTTGCTTGAAAATGAAAAAGCTGACCAGAACGGTTCTAA 960 Query 1067 AGATGGAAAAACCGACTCAGTCGACAACCCCAATTCAGAAGAGAGTAAAACTA---AACC 1123 | | | |||||| ||||||||| ||||||||||| |||||||| |||| Sbjct 961 C--T--A----C----TCAGTCAACAACCCCACTTCAGAAGAGAATAAAACTACTCAACC 1008 Query 1124 TCTGTAGACTTTAGAAGATTGAAGAGCCCTTTT 1156 ||||||||||||||||||||| ||||||||||| Sbjct 1009 TCTGTAGACTTTAGAAGATTGCAGAGCCCTTTT 1041 > Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311 Length=852 Score = 529 bits (286), Expect = 2e-149 Identities = 510/615 (83%), Gaps = 28/615 (5%) Strand=Plus/Plus Query 503 TCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCATAGAGAAGTAGTAGAAGAAGTTTC 562 ||| ||||||||||| || |||||||||| ||||| ||| |||||||||||||||| ||| Sbjct 249 TCTCGGAGTTGAAGATTCGATGTTCGAATTCATCCGTAGCGAAGTAGTAGAAGAAGCTTC 308 Query 563 AAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAGAGAAGGAGATCTCTGC 622 ||| |||| ||||||||||||||||||||||||||| || |||||||||||| | |||| Sbjct 309 AAAGAGGCGGGAAGCTGGAGAAATTGATGGAGAGACAGCGAAAGAGAAGGAGTTTTCTGT 368 Query 623 TCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGA 682 | ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 369 TTTGCTCTATGCACTGCATTTGAATCTGAGGTGGAAGAAGTATCTGATTGTATTTGATGA 428 Query 683 TGTCC-AGGA-GATCGATAACTGGGACGAGAAACTCGATGCGAAACTCAACGAGGGTGAA 740 ||| | || | || || || ||||| ||||| ||||||| |||| |||| |||||||| Sbjct 429 TGTGCGAG-ACGAG-GACAATTGGGATGAGAAGCTCGATGTGAAATTCAAGGAGGGTGAG 486 Query 741 AAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGGGTCATATAC 800 |||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 487 AAATGGGGGAAGCATCTTTCAGATGGATTCCCTAAAGAGTCTGGTGGGAGAGTCATATAC 546 Query 801 ACGACCAGAGATGAGAATCTGGCGA-AGAACCTTGTTGTTCAGAA-A-CATGAGATCCAT 857 |||||||| || |||| ||||| | |||| || |||| ||||| | |||||||| ||| Sbjct 547 ACGACCAGGGAAAAGAAACTGGC-ACAGAAGCTAGTTG--CAGAAGAACATGAGATACAT 603 Query 858 CGTCTTTGGCCGCT-ATCTGATTCTAACAGTGTTTGGAAGATATATGAAGCAATGATCCA 916 ||||||||||| | | ||||| || | ||||| ||||| |||||| ||| || | | Sbjct 604 CGTCTTTGGCCTTTGA-CTGATACTGAGAGTGTCTGGAACATATATAAAG-AA-GCGCTG 660 Query 917 GAAGAGA--GA-GAAAGAGTCTCCAAGGAACGACAAGAAATG-TATAGATGAGCTGATGA 972 ||||||| || ||| ||| |||||||||||||||||||||| | || ||||||||||| Sbjct 661 GAAGAGAATGAAGAA-GAGCCTCCAAGGAACGACAAGAAATGCTC-AGTTGAGCTGATGA 718 Query 973 ACAAGTCTCGTGGTCTTCCTCTG-GCTGCTAGACTGTTGGCTGA-GCTTGATCCCATGTT 1030 ||||||||||||||||||| || || ||||||| |||||| | |||| |||| |||| Sbjct 719 ACAAGTCTCGTGGTCTTCC-CTTAGCCGCTAGACAGTTGGCC-ACGCTTCTTCCCGTGTT 776 Query 1031 G-TTTGACGATGGAAAGGCTAACCAGAACGGTTCTAAAGATGGAAAAA-CCGACTCAGTC 1088 ||| ||| || ||| ||| ||||||| |||| || ||| || | || |||||| | Sbjct 777 TCTTT-ACGTTGAAAAAGCTGACCAGAAAGGTTATACCCATG-AACCAGCCAACTCAGCC 834 Query 1089 GACAACCCCAATTCA 1103 ||||||||| |||| Sbjct 835 AACAACCCCACTTCA 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5