BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45460.1
Length=2868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494437 jgi|Araly1|494437|fgenesh2_kg.8__253__AT5G45470.1 2708 0.0
Ahg356466 jgi|Araly1|356466|fgenesh1_pg.C_scaffold_8000253 230 6e-59
> Ahg494437 jgi|Araly1|494437|fgenesh2_kg.8__253__AT5G45470.1
Length=2886
Score = 2708 bits (1466), Expect = 0.0
Identities = 2248/2611 (86%), Gaps = 111/2611 (4%)
Strand=Plus/Plus
Query 168 gagagacagagagagagGCTTTATCTCTTTTCCTCAAGTGAGAGCAAAAATGGTGGACGT 227
|||||| || || ||| ||| |||| |||||||| || |||||||||||||||||||||
Sbjct 230 GAGAGA-AG-GA-AGAAGCTCAATCTTTTTTCCTC-AGAGAGAGCAAAAATGGTGGACGT 285
Query 228 GATACCAAAACATATCAAAGATGCGTGGGACAGATGGAACATTAGAGGAACAATCTTTCT 287
|||||||||||| |||||||||| ||||| ||||||||||| |||||| || || ||||
Sbjct 286 GATACCAAAACACATCAAAGATGTTTGGGATAGATGGAACATAAGAGGAGCAGTCATTCT 345
Query 288 AAGTCTTACCCTTCAAGCCTTTCTCATTTGCTTCTCTCCAT-TAAGGAAACGAACACCAA 346
|||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||
Sbjct 346 CAGTCTTACCCTTCAAGCCATTCTCATTTGCTTCTCTCC-TCTAAGGAAACGCACACCAA 404
Query 347 GAAGGCACTTGATTATCG-TCATTTGGTCCTCTTATCTCTTAGCAGATTGGTCTGCTAAT 405
|||||| |||||| | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 405 GAAGGCTCTTGATCGT-GCTCGTTTGGTCCTCTTATCTCTTAGCAGATTGGTCTGCTAAT 463
Query 406 TTCGCTGTTGGTCTCATCTCTAAGAACCAAGGTAAAGATCTCAAACCTGATGACCCTCCA 465
|||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 464 TTCGCTGTTGGTCTCATCTCCAAGAACCAAGGTAAAGATCTCAAACCTGGTGCCCCTCCA 523
Query 466 CAGGACAAAAAGCTCATGGCTTTATGGGCACCATTCTTGCTCTTACATCTTGGTGGACCA 525
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 524 CAGGACAAAAAGCTCATGGCTTTATGGGCACCATTCTTGCTTTTGCATCTTGGTGGACCA 583
Query 526 GACACTATAACAGCTTTCGCGCTTGAAGATAACGCTCTTTGGCTCCGAAATGTTTTTGGG 585
|| || || ||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 584 GATACAATCACAGCTTTCGCGCTTGAAGATAACGCTCTCTGGCTCCGACATGTCTTTGGG 643
Query 586 CTTGTCTTTCAGGCAATTGCTGGTGTCTATGTGGTTCTCCA-GTCTCTGCCCAATAGCCT 644
|||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||
Sbjct 644 CTTGTCTTTCAGGCAATTGCTGGTGTCTATGTCGTTCTC-ATGTCTCTCCCCAATAGCCT 702
Query 645 TTGGGTAACAATACTCTTAGTGTTCATTTCTGGGACTATAAAGTATCTGGAAAGGACAAC 704
|||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 703 TTGGGTGATTATACTCTTAGTGTTCGTTTCTGGGACTATAAAGTATCTGGAGAGGACAAC 762
Query 705 GGCTTTGTATAGTGCAAGTTTGGACAAGTTTAGGGATTCTATGATTCAAGGACCAGATCC 764
||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 763 GGCTTTGTATAGTGCCAGTTTGGACAAGTTTAGGGACTCTATGATTCAAGCACCAGATCC 822
Query 765 AGGACCAAATTATGCGAAGCTCATGGAGGAGTACAAGGCCAAGAAAGAAGCAAAATTACC 824
||||||||| || || |||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 823 AGGACCAAACTACGCCAAGCTCATGGAGGAGTACAAGGCCAAGAAAGAGGCAAGACTACC 882
Query 825 CACCAAGATCATTCTGATTGATGAGCCTGACAAGGAACATAGGCCTAAGAAGTTAGAGCA 884
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 883 CACCAAGATCATTCTGATTGATGAACCTGACAAAGAAAATAGGCCTAAGAAGTTAGAGCA 942
Query 885 TCCATCCCTGGCCTCGGAGACAAAAAGAAAAGAGTTGACTCATCTTGAAATTGCTCAGTA 944
|||||| | |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 943 TCCATCATTAGCCTCGGACACAAAAAGAAAAGATTTGACTCATCTTGAGATTGCTCAGTA 1002
Query 945 CGCTTACAAATTCTTCAACACATTCAAGGGCCTTGTAGTCAACCTTATCTTCAGCTTCAG 1004
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1003 TGCTTACAAATTCTTCAACACATTCAAGGGCCTTGTGGTCAACCTTATCTTCAGCTTCAG 1062
Query 1005 GGAGCGTGACCAGAGCATAGAGATCTTTCAGAACTTGGAAG-ATCCAGAGGAAGCTTTAA 1063
|||||||||| ||||| ||||||||||| |||| || ||| || ||||||||||||| |
Sbjct 1063 GGAGCGTGACGAGAGCCTAGAGATCTTTGAGAATTTA-AAGGATTCAGAGGAAGCTTTGA 1121
Query 1064 GAATCATTGAGATTGAACTCGGCTTTC-TCTACGATGCTCTATTCACCAAGAACGCGGTT 1122
| |||||||| ||||| || || |||| | || ||||||||||||||||||| |||| ||
Sbjct 1122 GGATCATTGAAATTGAGCTTGG-TTTCCTTTATGATGCTCTATTCACCAAGATCGCGATT 1180
Query 1123 CTTCATAC-TGTT-TTGGGAACTGTCTCACG-AGTTGTTGCTTCGGGTTCCCTTGTGGCT 1179
|||||||| | || |||| |||| ||||||| | | ||||||| || |||| ||||||
Sbjct 1181 CTTCATACCT-TTATTGG-AACTTTCTCACGCA-TCCTTGCTTCTGGCACCCTGGTGGCT 1237
Query 1180 GCATTCATCATCTTTCATAAGATATCTAACAAAGGCAGAGACTTTCATGGAGCAGATGTC 1239
||||||||| |||||||||||| | | || |||| || | | |||||||| || |||||
Sbjct 1238 GCATTCATCCTCTTTCATAAGAAACCCAAGAAAGACATACAATTTCATGGTGCTGATGTT 1297
Query 1240 GTGATTACCTATATTCTGTTTGCAGTTGGCCTAGTTTTGGATTTCATATCCATCCTTTTG 1299
||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1298 GTGGTTACCTACACGCTGTTTGCAGTTGGTGTAGTTTTGGATTTCATATCCATCCTTTTG 1357
Query 1300 TTTCTGTTCTCAGACTGGACATGTGCTGCACTTA-GTAGCTTGAAGGACGATCCGGATGA 1358
|||||||||||||||||||| ||||||||||| | ||||||| |||||| | || || |
Sbjct 1358 TTTCTGTTCTCAGACTGGACGTGTGCTGCACT-ACGTAGCTTAAAGGACAACCCCGACAA 1416
Query 1359 GCCTCTATCATG---GAAAGATA-GATTTTTCAACTGTTTACTT-GAATTCAGAAAGCTG 1413
| ||||||| | || ||||| | |||| |||||| |||||| | || ||| |||||
Sbjct 1417 GGCTCTATCGTCCTCGATAGATAAGGTTTT-CAACTGGTTACTTAGTATA-AGACAGCTG 1474
Query 1414 CGTTGGAAGATGCAAGAGTGCCACAATAAAGGTGA-GCATAAGTGTACAAAAGAAGGTGA 1472
|||||||||| |||||| |||||| |||||| | |||||||||||| | ||
Sbjct 1475 CGTTGGAAGACGCAAGAATGCCACGGGAAAGGT-ACGCATAAGTGTACC---GCCTGTCT 1530
Query 1473 GAAACCGTGCATCAAGGAAGGTGATGATAAGTGTTCAATGGTACACGT-GCATCACATGC 1531
||| | ||| | | || | |||||||||| || || | |||| | |||
Sbjct 1531 TAAA------A--AAG-AT--T-ATAAAAAGTGTTCAACAGTGCA-GAAGCATGAGGTGC 1577
Query 1532 TCACGACGCCATTCTTCTTCCGGAGGTGGTGTGGAAGCATCAACGTATTCAACTTTCTAG 1591
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1578 TCTCGACGCCATTCTTCTTCCGGAGGTGGTGTGGAAGCATCAATGTATTCAACTTTTTAG 1637
Query 1592 CATATGCCACaaaaa-a-aaGACAAAAGAGGATCCACGATGCCGGA-GATGAGTT-CCGC 1647
| |||||||||||| | ||| ||| ||||||||||||| || | | |||| ||||
Sbjct 1638 CGTATGCCACAAAAGCAGAAGT-AAATC-GGATCCACGATGCTAGAAG-T-AGTTTCCGC 1693
Query 1648 TC-CT--T-ATGGATCATCATAGCTTTCCCGTTCAAAATAA-TCAATCTCA-TAATCCAG 1701
| || | ||||| |||||||||||||| ||| ||| || |||| || | | |||||
Sbjct 1694 -CGCTACTCATGGAAGATCATAGCTTTCCCATTCGAAA-AACTCAA-CTTAATCATCCA- 1749
Query 1702 AA-AGTTTTTGGATGTATTGTCGAGGTGATCAATAATGTGCACA-GATGGATCCGC-AGC 1758
|| | || |||| |||||| | | |||||| |||| |||| | |||||| || | |
Sbjct 1750 AACACTTCGACGATGGATTGTCAATTTCATCAATGATGTTCACAAG-TGGATCAGCCA-C 1807
Query 1759 ATAGTCAATACGTTATCAAGAAAC-CACCCTTGGGCTCGTTGTACTATTTACCCTCTCTA 1817
| ||||||| | ||||||||||| | | || | ||||| || ||||||||| ||||
Sbjct 1808 AAAGTCAATGCATTATCAAGAAAATCTTCTTTTG-CTCGTCGTTGGATTTACCCTATCTA 1866
Query 1818 -TAT-ATTGTTCCTATTCCACATCCCTAATTTCATCAAATATTTGTGGAATGTTCTCATT 1875
| | | |||| ||| || ||||||| |||||||||||| | ||||| || | |||| |
Sbjct 1867 CT-TCAA-GTTCATATCCCGCATCCCTCATTTCATCAAATCTGTGTGGGATATCCTCAGT 1924
Query 1876 GAGTTCTTAGGCATCCCGGATGCGCTTGATCTGGTCGAGAAGACGTTATTTGTACACGGA 1935
|||||||| | |||| ||||| |||||||| ||||| | |||||| ||||||||||||||
Sbjct 1925 GAGTTCTTTGACATCTCGGATACGCTTGATATGGTCCACAAGACGCTATTTGTACACGGA 1984
Query 1936 GAGCCCATGACAAAAGAATTGTGGAAGTTCATCTTCGAAGAGCTGAAAAACAAATCAAAG 1995
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1985 GAGCCCATGACGAAAGAATTGTGGAAGTTCATCTTCGAAGAGCTGAGAAACAAATCAAAG 2044
Query 1996 TATGGAGACAGTCCTGAAAATGCCAAAAGGATATCTTTGGCTAGGGGAGAATGGGCTTTA 2055
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 2045 TATGGAGACAGTCCTGAAAATGCCAAGAGGATATCTTTGGCTCGGGGAGAATGGACTTTA 2104
Query 2056 AGGGACAACCTACCAGAGGATGCAGAACGTGAAAAACTGGTACGTTATGTCACAAAGGTC 2115
|| || ||||| || |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2105 AGAGAGAACCTGCCGGAGGATGCTGAACGTGAAAAAATGGTACGTTATGTCACAAAGGTC 2164
Query 2116 GATTATGATCAGAGTCTTTTGATGTGGCACATCGCAACCGAGTTCTGCTACCAAGAACAT 2175
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||
Sbjct 2165 GATTATGATCAGAGTCTTTTGATGTGGCACATCGCAACTGAGCTCTGTTACCAACAACAT 2224
Query 2176 AAGAAAGAGACTATCCCAGAGGGTTATGATGAACAATGCAAGCA--A-A--A-------- 2222
|| ||||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 2225 GAGGAAGAGACTATCCCAGAGGGCTATGATGAACAATGCAAGCATTACAGTAACCGCGAG 2284
Query 2223 T-CA------TC-TC--AGACTACATGATGTATCTCCTGATCTTGCAACCCAGTCTGATG 2272
| || || || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2285 TTCAGCAAAATCATCTCAGACTACATGATGTATCTCCTGATCTTGCAACCCGGTCTGATG 2344
Query 2273 TCCGAGGTTGCTGGAATTGGGAAGATCAGATTCAGAGACACATTGGCGGAAACTGACAAG 2332
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2345 TCCGAGGTTGCTGGAATTGGGAAGATCAGATTCAGAGACACATTGGCTGAAGCTGACAAG 2404
Query 2333 TTTTTCGAGAGGAAACGA-ATCTAT-A-ATGTGG-GCGTGAATTTAGCCAC-AGAGTATA 2387
|||||| |||||| | | ||| | | | | | ||||||| ||||||| | | |||
Sbjct 2405 TTTTTCCAGAGGAGGC-ATATCGAGGACAAGAGAAGCGTGAAGATAGCCACCATAA-ATA 2462
Query 2388 TACTGGATGTC-AATAGTGAAATTGAACCAGTGGACGTCAAGGGAGATCGAAGCAAGTCA 2446
| || || ||| || ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2463 TTCTAGACGTCGAA-AGTGAAATTGAACCAATGGACGTGAAGGGAGATCGAAGCAAGTCT 2521
Query 2447 GTGTTGTTTGATGCGAGCAGGCTAGCCAAAGACCTTACA-AGGATGGAGAAGACACACAA 2505
||||||||||| ||||| |||||||||||||||||| | || ||||||||||| || ||
Sbjct 2522 GTGTTGTTTGACGCGAGTAGGCTAGCCAAAGACCTTGCGGAG-ATGGAGAAGACGCAGAA 2580
Query 2506 CAAAGATAAATGGGAGATACTGAGTAAAGTGTGGGTGGAGCTTCTCTGTTATGCAGCTTG 2565
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2581 GAAAGACAAATGGGAGATACTGAGTAAAGTGTGGGTGGAACTTCTCTGTTATGCAGCTTG 2640
Query 2566 TCATTGCGACTCTACGGCTCACGTGGAGCAACTCAGCAGAGGCGGTGAGCTTATAAACTT 2625
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2641 TCATTGCGACGCTACGGCTCACGTGGAGCAACTCAGCAGAGGAGGTGAGCTCATAAACTT 2700
Query 2626 TGTGTGGCTTCTAATGGCTCACTTTGGACTAACAAATCAGTTCCAAATCAACAAAGGAGA 2685
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2701 CGTGTGGCTTCTAATGGCTCACTTTGGACTAACAGATCAGTTCCAGATCAACAAAGGAGA 2760
Query 2686 TGCCAGAGCCAAACTCATCATAGGCAAGTGA 2716
|||||||||||||||||| ||||||||||||
Sbjct 2761 TGCCAGAGCCAAACTCATAATAGGCAAGTGA 2791
> Ahg356466 jgi|Araly1|356466|fgenesh1_pg.C_scaffold_8000253
Length=2106
Score = 230 bits (124), Expect = 6e-59
Identities = 360/469 (77%), Gaps = 36/469 (8%)
Strand=Plus/Plus
Query 237 ACATATCAAAGATG-CGTGGGACAG-ATGGAACATTAGAGGAACAATCTTTCTAAGTCT- 293
|||||||||||||| | |||||| | |||||||| ||||||| | |||| |||||
Sbjct 21 ACATATCAAAGATGTC-TGGGAC-GCCTGGAACATCAGAGGAATTGTAATTCTCAGTCTC 78
Query 294 TACCCTTCAAG-CCTTTCTCAT-TTGCTTCTCTCCATTAAGGAAACGAACA-CCAAGAAG 350
| | ||| || | ||||||| | ||| | ||||| |||||| ||||| |||| ||
Sbjct 79 T-CGATTC-AGACAATTCTCATCAT-CTTAGCACCATTGAGGAAAAGAACATCCAA-CAG 134
Query 351 G--CACTTGATTATCGTCATTTGGTCCTCTTATCTCTTAGCAGATTGGTCTGCTAA-TTT 407
| | || | || | ||| | |||| |||||||||||||||||||||||||| || |||
Sbjct 135 GTTC-CTGGCTT-TAGTCCTGTGGTTGTCTTATCTCTTAGCAGATTGGTCTGCAAACTTT 192
Query 408 CGCTG-TTGGTCTCATCTCTAAGAACCAAGGTAAAG-ATCTCAAACCTGATGACCCTCCA 465
| || |||| || ||| | ||||| ||||| |||| || | || || ||||| |||||
Sbjct 193 -G-TGATTGGACTTATCGCCAAGAATCAAGGGAAAGAAT-TGAAGCCAGATGATCCTCCT 249
Query 466 CAGGACAAAAAGCTCATGGCTTTATGGGCACCATTCTTGCTCTTACATCTTGGTGGACCA 525
|| ||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 250 CAAGACCAGCAGCTCATGGCTTTGTGGGCACCGTTCTTGCTCTTACATCTTGGTGGACCA 309
Query 526 GACACTATAACAGCTTTCGCGCTTGAAGATAACGCTCTTTGGCTCCGAAATGTTT-TTGG 584
||||| || || || | | | ||||| || || |||||||||| | || | ||| ||||
Sbjct 310 GACACAATCACTGCATACTCTCTTGAGGACAATGCTCTTTGGCACAGACAC-TTTCTTGG 368
Query 585 GCTTGTCTTT-CAGGCAATTGCTGGTGTC-TATGTGGTTCTCCAGTCTCTGCCCAATAGC 642
|| | |||| ||||| || | |||| | ||||| ||| |||| ||||| || ||| |
Sbjct 369 CCTGG-CTTTACAGGCTCTTTCAGGTG-CATATGTTGTTATCCAATCTCTACCTAATC-C 425
Query 643 -CTTTGGGTAA-CAATACT-CTTAGTGTTCATTTCTGGGAC-TATAAAG 687
|||||||| | || |||| ||| |||||||| ||||||| | |||||
Sbjct 426 TCTTTGGGTGATCA-TACTGCTTT-TGTTCATTGCTGGGACCT-TAAAG 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108252476290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5