BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45475.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1 1138 0.0
Ahg916350 jgi|Araly1|916350|Al_scaffold_0008_1101 390 9e-108
Ahg948440 jgi|Araly1|948440|scaffold_800327.1 126 3e-28
> Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1
Length=2776
Score = 1138 bits (616), Expect = 0.0
Identities = 687/721 (95%), Gaps = 6/721 (1%)
Strand=Plus/Minus
Query 334 TCACTTGCCTATAATCAGTTTGGCTCTGGCATCTCCTTGGTTGATTTGGAATTGGTCTCC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2776 TCACTTGCCTATAATCAGTTTGGCTCTGGCATCTCCTTGGTTGATTTGGAATTGGTCTCC 2717
Query 394 TAGTCCAAAATGAGCCATCAATAGCCAAACAAAGCTTATGAGTTCTCCTCCTTTGCTTAG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 TAGTCCAAAATGAGCCATCAATAGCCAAACAAAGCTTATGAGTTCTCCTCCTTTGCTTAG 2657
Query 454 CTGAGCTGCGTGTTCTATAGCGCCACACTTTGTCGCTGCATACGAAAGCAACTCAACCCA 513
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2656 CTGAGCTGCGTGTTCTATAGCGCCACACTTTGTCGCTGCATAAGAAAGCAACTCAACCCA 2597
Query 514 CACTTGGCTCATTATTTTCCACATCTCTGAGTCGTCCTCCTTATTCTTTCTTAAACCCTT 573
||||| ||||| ||||| ||||||||||| || || |||||| ||||| |||||||||||
Sbjct 2596 CACTTTGCTCACTATTTCCCACATCTCTGTGTTGTTCTCCTTGTTCTTGCTTAAACCCTT 2537
Query 574 AAGCTCTTTCGCCAGCATGGCCCCATCAAACAGGACGGATTTGCTTCTATCTCCTTTCAC 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2536 AAGCTCTTTCGCCAGCATGGCCCCATCAAACAGGACGGATTTGCTTCTATCTCCTTTCAC 2477
Query 634 GTCAATGGGCTCAGCTTTTGCTGGAACTGCCACTGATAAAATTGCCACGCTGGCTTCCTT 693
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 2476 GTCAATGGGCTCAGCTTTTGCTGGAACAGCCACAGATAAAATTGCGTCGCTGGCTTCCTT 2417
Query 694 TGCATCAGGGGCCTTCTTTGCGGATATCCCCATGATATGCCTCCTATCGAAGAACCTCTG 753
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 ---A---GGGGCCTTCTTTGCGGATATCCCCATGATATGCCTCCTATCGAAGAACCTCTG 2363
Query 754 AGCCTCCTCGCACGTGTCTCTGAATCTTATCTTTCCAATACCCACAACAGCTGACATCAG 813
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 AGCCTCCTCGCATGTGTCTCTGAATCTTATCTTTCCAATACCCACAACAGCTGACATCAG 2303
Query 814 AGTGGGTTGCATCATTAGGAGATACATCATGTAGTCTGACAGGATTTTACTGAACTCACG 873
||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||
Sbjct 2302 AGTGGGTTGCATCATTAGGAGGTACATCATGTAGTCTGAGAGAATTTTACTGTACTCACG 2243
Query 874 GGCGCTATGATTCGCTTTAGTGCCtttttttGTCTGGTATAAGAGCTCAGTGGCTATATG 933
| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||
Sbjct 2242 GTTGCTATGATTCGCTTCAGTGCCTTCTTCTGTCTGGTATAAGAGCTCAGTGGCAATATG 2183
Query 934 CCATACAAGAAGGCTCTGATCGTAATCCATTTCCATCACATAGCGTAGAAGTTTCTCACG 993
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2182 CCATACAAGAAGGCTCTGATCATAATCCATTTCCATCACATAGCGTAGAAGTTTATCACG 2123
Query 994 ttttttttCTGTTTCTGGGTCACCTTGTATGTCGCGCAGTGTCCAGTCACCTCTTGCTGA 1053
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2122 TTTTTTTTCTGTTTCTGGGTCACCTTGTATGTCGCGCAGAGTCCAGTCACCTCTAGCTGA 2063
Query 1054 A 1054
|
Sbjct 2062 A 2062
> Ahg916350 jgi|Araly1|916350|Al_scaffold_0008_1101
Length=936
Score = 390 bits (211), Expect = 9e-108
Identities = 432/532 (81%), Gaps = 41/532 (8%)
Strand=Plus/Minus
Query 485 GTCGCTGCAT-ACGAAAGCAACTCAACCCACACTTGGCTCATTATTTTCCACATCTCTGA 543
|||||||||| || |||||||||||||||||||||| |||| || ||||||||||||
Sbjct 932 GTCGCTGCATAAC-AAAGCAACTCAACCCACACTTGACTCACTACCCTCCACATCTCTGT 874
Query 544 GTCGTCCTCC-TTATTCTTTCTTAAACCCTTAAGCTCTTTCGCCAGCATGGCCCCATCAA 602
||||||| || || || | | |||||| |||||||||||| |||||||||||||||||||
Sbjct 873 GTCGTCC-CCGTT-TT-TGT-TTAAACTCTTAAGCTCTTTGGCCAGCATGGCCCCATCAA 818
Query 603 ACAGGACGGATTTGCTTCTATCTCCTTTCACGTCAATGGGCTCAGCTTTTGCTGGAACTG 662
| ||| | || |||||||| ||| ||||||| || || |||||||||||||||||||| |
Sbjct 817 AGAGGGCAGACTTGCTTCTGTCTTCTTTCACATCGATAGGCTCAGCTTTTGCTGGAACCG 758
Query 663 CCACTGATAAAATTGCCACGCTGGCTTCCTTTGCATCAGGGGCCTTCTTTGCGGATATCC 722
|| ||||| ||||| | ||| ||||||| || || | | || | | | |
Sbjct 757 ATACAGATAATATTGCAAAGCTAGCTTCCTCTG-AT-----GAC--ATTAAC--A-A-CT 710
Query 723 CCATGATATGCCTCCTATCGAAGAACCTCTGAGCCTCCTCGCACGTGTCTCTGAATCTTA 782
| ||||||||| ||||||| ||||| | |||||||||| | |||||||| ||||| |
Sbjct 709 GTGTAATATGCCTCGTATCGAATAACCTTTTAGCCTCCTCGTAGGTGTCTCTAAATCTAA 650
Query 783 TCTTTCCAATACCCACAACAGCTGACATCAGAGTGGGTTGCATCATTAGGAGATACATCA 842
|||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||
Sbjct 649 TCTTTCCAATACCCACAACAGCTGACATCAGACTCGGTTGCATCATTAGGAGGTAAATCA 590
Query 843 TGTAGTCTGACAGGATTTTACTGAACTCACGGGCGCTATGATTCGCTTTAGTGCCttttt 902
|||||||||| ||||||||||| || |||| ||| | | | ||| || |||
Sbjct 589 TGTAGTCTGAAAGGATTTTACTCAATTCACTGGC--T-T----C--TTT--TG--TTT-- 545
Query 903 ttGTCTGGTATAAGAGCTCAGTGGCTATATGCCATACAAGAAGGCTCTGATCGTAATCCA 962
| | |||||||||| |||||| |||||||| ||||||||||||||||| |||||||
Sbjct 544 --G---G-TATAAGAGCTTAGTGGCAATATGCCACACAAGAAGGCTCTGATCATAATCCA 491
Query 963 TTTCCATCACATAGCGTAGAAGTTTCTCACGttttttttCTGTTTCTGGGTC 1014
| |||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 490 TATCCATCACATAGCGTAGAAGTTTCTCACGTTTCTTTTCTGTT-CTGCGTC 440
> Ahg948440 jgi|Araly1|948440|scaffold_800327.1
Length=2472
Score = 126 bits (68), Expect = 3e-28
Identities = 159/203 (78%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 357 CTCTGGCA-TCTCCT-TGGTTGATTTGGAATTGGTCTCCTAGTCCAAAATGAGCCATCAA 414
|||| ||| |||||| | | || | |||||||||||||| || |||||||||||||||||
Sbjct 2428 CTCTAGCATTCTCCTCT-G-TGGTCTGGAATTGGTCTCCAAGGCCAAAATGAGCCATCAA 2371
Query 415 TAGCCAAACAAAGCTTATGAGTTCTCCTCCTTTGCTTAGCTGAGCTGCGTGTTCTATAGC 474
||||||||||||||| |||| ||| ||||| ||||| || || ||| | |||| | | |
Sbjct 2370 TAGCCAAACAAAGCTGATGAATTCCCCTCCATTGCTCAGTTGCGCTACATGTTGTTTCGG 2311
Query 475 GCCACACTTTGTCGCTGCATA-CGAAAGCAACTCAACCCACACTTGGCTCATTATTTTCC 533
| |||| | || ||| |||| | |||||| ||| ||||| |||| ||| | ||| | ||
Sbjct 2310 GTCACAATAAGTTGCTCCATAGC-AAAGCATCTCCACCCAGACTTTGCTTACTATCTCCC 2252
Query 534 ACATCTCTGAGTCGTCCTCCTTA 556
|| || || ||||| ||||||
Sbjct 2251 ACTTCACTTCTTCGTCTTCCTTA 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5