BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45480.1
Length=2987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1 4163 0.0
Ahg916350 jgi|Araly1|916350|Al_scaffold_0008_1101 390 3e-107
Ahg948440 jgi|Araly1|948440|scaffold_800327.1 126 8e-28
> Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1
Length=2776
Score = 4163 bits (2254), Expect = 0.0
Identities = 2629/2806 (94%), Gaps = 41/2806 (1%)
Strand=Plus/Plus
Query 1 CCAACCAGAATAATTCAAACCTTCACACACAACaaaaagcct-caaaag-caaaaaaact 58
|||||||||||||||||||||||||||||||| ||||| | ||||| | |||| |
Sbjct 1 CCAACCAGAATAATTCAAACCTTCACACACAA-AAAAA-AATAAAAAAGCCTCAAAAGC- 57
Query 59 catagtaaaaccagaaaaagaaagaagTCAACCTCTTTAGATGTATCTGTGTTAGATCTC 118
| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 58 AAAAAAAAAACCAGAAAAAGAAAGAAGTCAAACTCTTTAGATGTATCTGTGTTGGATCTC 117
Query 119 ATAA---ACCATCAGTTCTTGTCTGTTTCAGCAAATCAGTTTCAAGATGGTGAACGCAAT 175
|||| ||||||||||||||||||| || ||||||| ||| |||||||||| ||||||
Sbjct 118 ATAAGCCTCCATCAGTTCTTGTCTGTTCCAACAAATCAATTTGAAGATGGTGACCGCAAT 177
Query 176 CCCAAAGCCTATCAAGGACATTTGGGACGAATGGAGCATTCGAAGTACCTTAATCTTCAG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCCAAAGCCTATCAAGGACATTTGGGACGAATGGAGCATTCGAAGTACCTTAATCTTCAG 237
Query 236 TCTCAGCCTTCAAACATTTCTCATTTTCTTTGCACCTCAAAGAAAACGCTCATCCAGAAA 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TCTCAGCCTTCAAACATTTCTCATTTTCTTTGCACCTCAAAGAAAACGCTCATCCAAAAA 297
Query 296 AGTTTTACTCTCTT-TCATTTGGTCAGCTTACCTTCTTGCTGATTGGTCTGCCAATTTCG 354
|| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 AGCTTTACTCT-TTCTCATTTGGTCAGCTTACCTTCTTGCTGATTGGTCGGCCAATTTCG 356
Query 355 CCGCCGGACAAATCTCAGATAGTCAAGGAGATGATCCAGAACCCGGAGAACCGAAAAAGA 414
||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||
Sbjct 357 CCGCCGGACAAATCTCAGACAGTCAAGGAAATGATCCAAAACCCGGAGACCCGAAAAAGA 416
Query 415 GCGCCGAGTTGTTTGCTTTCTGGGTTCCTTTCTTGCTCTTGCATCTCGGTGGTCCAGATA 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCGCCGAATTGTTTGCTTTCTGGGTTCCTTTCTTGCTCTTGCATCTCGGTGGTCCAGATA 476
Query 475 CAATCACTGCCCTTGCCCTTGAAGATAACGAGCTCTGGCTCAGGCACTTGTTGGGTCTTT 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 CAATCACTGCCCTTGCCCTTGAAGATAACGAGCTATGGCTCAGGCACTTGTTGGGTCTTT 536
Query 535 TCTTTCAATCAGTTGCAACCGTTTACGTGCTTTTGCAGTCGTTACCCAATGCTCTTTGGA 594
|||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 537 TCTTTCAATCCGTTGCAACCGTTTACGTGCTTTTGCAATCGCTACCCAATGCTCTTTGGA 596
Query 595 AA-CCTATTTTGCTGGTGTTTGCGACCGGGGTGATCAAGTATGTCGAGAGGACATTAGCT 653
|| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 AAGCC-ACTTTGCTGGTGTTTGCGACCGGAGTGATCAAGTATGTCGAGAGGACATTAGCT 655
Query 654 TTGTACCTGGCGAGTCTTGACAAGTTCAAAGATTCCATGATTCAGCGGCCTGATCCTGGA 713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 656 TTGTACCTGGCGAGTCTTGACAAGTTCAAGGATTCCATGATTCAGCGGCCTGATCCTGGA 715
Query 714 CCAAACTACGCAAAGCTCATGGAGGAATACGCAGCCAAGAAAGATATGAAGATGCCTACA 773
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCAAACTACGCGAAGCTCATGGAGGAATACGCAGCCAAGAAAGATATGAAGATGCCTACA 775
Query 774 CAGATTATCAAGGTTGGCGAGCCTGAGAAAGATCCAAGAGACGA-TGCTCCGGTAAAGCC 832
|||||||||||| |||| ||||||||| ||||||||| || | | ||||| ||| ||
Sbjct 776 CAGATTATCAAGATTGGAGAGCCTGAGCAAGATCCAAAAG-CCAGTGCTCAGGT-CAG-- 831
Query 833 TCCTGACGGGTTCACTCCACTCAATATTCTCCAGTACGCCTACAAGTACTTTAATATCTT 892
||||| | | ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 832 GCCTGAAAAGCTGACTCCACTCAATATTCTCCAGTACGCCTATAAGTACTTCAATATCTT 891
Query 893 CAAAGGTCTTGTGGTTGATCTCATCTTTACATTTCAACAACGAGCTGAGAGCAAGAGATT 952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TAAAGGTCTTGTGGTTGATCTCATCTTTACATTTCAACAACGAGCTGAGAGCAAGAGATT 951
Query 953 CTTTGACTCGCTGAAAGCAGAAGAAGCTTTAAGAATCTTAGAGGTTGAGCTCAACTTTAT 1012
||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTTTGACTCGCTGGAAGCACATGAAGCTTTAAGAATCTTAGAGGTTGAGCTCAACTTTAT 1011
Query 1013 CTACGCAGCTCTATACACGAAAGCCGAGATCTTGCACAACTGGATAGGATTCCTCTTCAG 1072
|||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 1012 CTACGCAGCTCTGTACACGAAAGCCGAGATCTTGCATAATTGGATAGGATTCATCTTCAG 1071
Query 1073 GTTCATTGCCCTGGGATGCCTTGCAGCAGCTCTACGCATCTTTCAATACAAGAGCAAGAA 1132
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1072 GTTCATTGCCCTGGGATGCCTTATAGCAGCTCTACGCATCTTTCAATACAAGAGCAAGAA 1131
Query 1133 AGATTATAGTGGATTTGATGTTGGCCTTACTTACGCATTGCTGTTAGGAGGAATAGCTCT 1192
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGATTATAGCGGATTTGATGTTGGCCTTACTTACGCATTGCTGTTAGGAGGAATAGCTCT 1191
Query 1193 GGATTGCATCGCTCTTATCATGTTCTGTGCATCTGATTGGACGTTTGTCAGATTGAGGAA 1252
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGATTCCATCGCCCTTATCATGTTCTGTGCATCTGATTGGACGTTTGTCAGATTGAGGAA 1251
Query 1253 GATGAAGGACGAAGTGGACGATCCACCCACCTGGTCCGACAACATTCTTAACTGGATTCT 1312
|||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1252 GATGAAGGACGAGGTGGACGATCCAGACACCTGGTCCGACCACATTCTTAACTGGATTCT 1311
Query 1313 TGAA-AACATTCTCGGGGTCAGGAAATTGAAGGTGGAGGAGTATGATGAATGCTACAAGA 1371
| || |||||||||||||||||| | |||||| |||||| |||||| ||||||||||||
Sbjct 1312 T-AACAACATTCTCGGGGTCAGGGAGTTGAAGACGGAGGAATATGATAAATGCTACAAGA 1370
Query 1372 ATACACAGTCTCATGAAGTGCCCAACACGAGTACTAAGAAAACACCATTTCTTAAAAGGA 1431
| |||| |||||||||||||||| ||||||||| ||||||||||| |||||| | |
Sbjct 1371 AGACACTGTCTCATGAAGTGCCCGGCACGAGTACCAAGAAAACACCGTTTCTT---A--A 1425
Query 1432 TTCTTAACAGGATTCTCAGGGTGAGGGAGTTGAAGACAGAGAAGTCTCATGAAGTTCTCG 1491
| | |||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1426 --C-T----GGATTCTCGGGGTCAGGAAGTTGAAGACAGAGAAGTCTCATGAAGTTCTCG 1478
Query 1492 ACAAGAGTACCAGCAAAATACCAGGTCAGGAAGTGCCCGACAAGAGTGCCAAGACAATAC 1551
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||
Sbjct 1479 ACAAGAGTACCAGCAAAATAACAGGTCATGAAGTGCCCGACAAGAGTGCCAAGAAAATAC 1538
Query 1552 CATGTCATAAAGTGCTCGACACGAGTTTCATGTATCGCCGGTGGTCTGAGTATGTACATG 1611
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1539 CATGTCATAGAGTACTCGACACGAGTTTCATGTATCGCAGGTGGTCTGAGTATGTACATG 1598
Query 1612 CACACAACCTGATCGAATACTGCCTAGGTTTAAAACCGAAGCGAATCCACCATACCAAGG 1671
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1599 CACACAACCTGATCGAATACTGCTTATGTTTAAAACCGAAGCGAATCCACCATACCAAGG 1658
Query 1672 GTTTCATACACATCGCCTTTGACAAGGTTATCAACATACTTTACATTGGCCCCGCATTCA 1731
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1659 GTTTGATACACATCGCCTTTGACAAGCTTATCAACATCCTTTACATTGGCCCCGCATTCA 1718
Query 1732 CAAAACTTGGAAGTGTCATTGAATCCTGTTTTAGAGTCACAAAACAGAGAATTCATCAGA 1791
||||| ||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 1719 CAAAATTTGTAAGTGTCATTCAATCCTGTTTTAGAGTCACAAAAAAGACAATTCATCAGA 1778
Query 1792 CTTTCAAGTGGATTGACGGTAAAGTAAGTCGTTTATGCAAGAAAT-ACCCGAAGTTGAAT 1850
||||||||||||||||||||||| ||||||| || |||||| ||| ||||||||||||||
Sbjct 1779 CTTTCAAGTGGATTGACGGTAAAATAAGTCGCTTCTGCAAG-AATCACCCGAAGTTGAAT 1837
Query 1851 GAAGAGTACATTAGGTTTAGCTTCTTCTGCATATTTTACATTCCTAGTCTACCTGGACGC 1910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GAAGAGTACATTAGGTTAAGCTTCTTCTGCATATTTTACATTCCTAGTCTACCTGGACGC 1897
Query 1911 TG-GATAAAAAGTTTTATGGAGTTCTTTGGCATCCGAGCTCAGCTAGATGAGGTGATCTA 1969
| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1898 -GCGATAAAAAGATTTATGGAGTTCTTTGGCATTCGAGCTCAGCTAGATGAGGTGTTCTA 1956
Query 1970 CACATCTAGTGATCGTCTCACCCTGGATATGTGGGAACACATATTCGGAGAGGTTAAAGC 2029
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1957 CACATCCAGTGATCGCCTCACCCTGGATATGTGGGAACACATATTCAGAGAGGTTAAAGC 2016
Query 2030 CAAATCCCGTTTCGCTGACGACTCTGAAAGCGCCATGAGGGTATCTTCAGCAAGAGGTGA 2089
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2017 CAAATCCCGTTTTGCTGACGACTCTGAAAGCGCCATGAGGGTATCTTCAGCTAGAGGTGA 2076
Query 2090 CTGGACACTGCGCGACATACAAGGTGACCCAGAAACAGaaaaaaaaCGTGAGAAACTTCT 2149
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2077 CTGGACTCTGCGCGACATACAAGGTGACCCAGAAACAGAAAAAAAACGTGATAAACTTCT 2136
Query 2150 ACGCTATGTGATGGAAATGGATTACGATCAGAGCCTTCTTGTATGGCATATAGCCACTGA 2209
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2137 ACGCTATGTGATGGAAATGGATTATGATCAGAGCCTTCTTGTATGGCATATTGCCACTGA 2196
Query 2210 GCTCTTATACCAGACaaaaaaaGGCACTAAAGCGAATCATAGCGCCCGTGAGTTCAGTAA 2269
|||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||||
Sbjct 2197 GCTCTTATACCAGACAGAAGAAGGCACTGAAGCGAATCATAGCAACCGTGAGTACAGTAA 2256
Query 2270 AATCCTGTCAGACTACATGATGTATCTCCTAATGATGCAACCCACTCTGATGTCAGCTGT 2329
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2257 AATTCTCTCAGACTACATGATGTACCTCCTAATGATGCAACCCACTCTGATGTCAGCTGT 2316
Query 2330 TGTGGGTATTGGAAAGATAAGATTCAGAGACACGTGCGAGGAGGCTCAGAGGTTCTTCGA 2389
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2317 TGTGGGTATTGGAAAGATAAGATTCAGAGACACATGCGAGGAGGCTCAGAGGTTCTTCGA 2376
Query 2390 TAGGAGGCATATCATGGGGATATCCGCAAAGAAGGCCCCTGATGCAAAGGAAGCCAGCGT 2449
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2377 TAGGAGGCATATCATGGGGATATCCGCAAAGAAGGCCCC---T---AAGGAAGCCAGCGA 2430
Query 2450 GGCAATTTTATCAGTGGCAGTTCCAGCAAAAGCTGAGCCCATTGACGTGAAAGGAGATAG 2509
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CGCAATTTTATCTGTGGCTGTTCCAGCAAAAGCTGAGCCCATTGACGTGAAAGGAGATAG 2490
Query 2510 AAGCAAATCCGTCCTGTTTGATGGGGCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGAAA 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2491 AAGCAAATCCGTCCTGTTTGATGGGGCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGCAA 2550
Query 2570 GAATAAGGAGGACGACTCAGAGATGTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCT 2629
||| |||||| || || ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 2551 GAACAAGGAGAACAACACAGAGATGTGGGAAATAGTGAGCAAAGTGTGGGTTGAGTTGCT 2610
Query 2630 TTCGTATGCAGCGACAAAGTGTGGCGCTATAGAACACGCAGCTCAGCTAAGCAAAGGAGG 2689
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 TTCTTATGCAGCGACAAAGTGTGGCGCTATAGAACACGCAGCTCAGCTAAGCAAAGGAGG 2670
Query 2690 AGAACTCATAAGCTTTGTTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCA 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2671 AGAACTCATAAGCTTTGTTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCA 2730
Query 2750 AATCAACCAAGGAGATGCCAGAGCCAAACTGATTATAGGCAAGTGA 2795
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2731 AATCAACCAAGGAGATGCCAGAGCCAAACTGATTATAGGCAAGTGA 2776
> Ahg916350 jgi|Araly1|916350|Al_scaffold_0008_1101
Length=936
Score = 390 bits (211), Expect = 3e-107
Identities = 432/532 (81%), Gaps = 41/532 (8%)
Strand=Plus/Plus
Query 2115 GACCCAGAAACAGaaaaaaaaCGTGAGAAACTTCTACGCTATGTGATGGAAATGGATTAC 2174
||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 440 GACGCAG-AACAGAAAAGAAACGTGAGAAACTTCTACGCTATGTGATGGATATGGATTAT 498
Query 2175 GATCAGAGCCTTCTTGTATGGCATATAGCCACTGAGCTCTTATACCAGACaaaaaaaGGC 2234
||||||||||||||||| |||||||| |||||| |||||||||| | | ||| |
Sbjct 499 GATCAGAGCCTTCTTGTGTGGCATATTGCCACTAAGCTCTTATA-C---C----AAA--C 548
Query 2235 ACTAAAGCGAATCATAGCGCCCGTGAGTTCAGTAAAATCCTGTCAGACTACATGATGTAT 2294
| ||| | | | ||| |||| || ||||||||||| |||||||||||||| ||
Sbjct 549 A--AAA--G----A-A--GCCAGTGAATTGAGTAAAATCCTTTCAGACTACATGATTTAC 597
Query 2295 CTCCTAATGATGCAACCCACTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATAAGATTC 2354
||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 598 CTCCTAATGATGCAACCGAGTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATTAGATTT 657
Query 2355 AGAGACACGTGCGAGGAGGCTCAGAGGTTCTTCGATAGGAGGCATATCATGGGGATATCC 2414
|||||||| | |||||||||| | ||||| ||||||| ||||||||| | | | |
Sbjct 658 AGAGACACCTACGAGGAGGCTAAAAGGTTATTCGATACGAGGCATATTACACAG-T-T-- 713
Query 2415 GCAAAGAAGGCCCCTGATGCAAAGGAAGCCAGCGTGGCAATTTTATCAGTGGCAGTTCCA 2474
| || | | || || ||||||| ||| | ||||| ||||| || | ||||||
Sbjct 714 GTTAAT--GTC-----AT-CAGAGGAAGCTAGCTTTGCAATATTATCTGTATCGGTTCCA 765
Query 2475 GCAAAAGCTGAGCCCATTGACGTGAAAGGAGATAGAAGCAAATCCGTCCTGTTTGATGGG 2534
|||||||||||||| || || ||||||| ||| |||||||| || | ||| |||||||||
Sbjct 766 GCAAAAGCTGAGCCTATCGATGTGAAAGAAGACAGAAGCAAGTCTGCCCTCTTTGATGGG 825
Query 2535 GCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGAAAGAATAA-GGAGGACGACTCAGAGAT 2593
||||||||||| |||||||||||| |||||| | | || || || ||||||| |||||||
Sbjct 826 GCCATGCTGGCCAAAGAGCTTAAGAGTTTAA-ACA-AA-AACGG-GGACGACACAGAGAT 881
Query 2594 GTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTTCGT-ATGCAGCGAC 2644
||||| || |||| |||||||||||||||||||||| || ||||||||||
Sbjct 882 GTGGAGGGTAGTGAGTCAAGTGTGGGTTGAGTTGCTTT-GTTATGCAGCGAC 932
Score = 167 bits (90), Expect = 5e-40
Identities = 123/139 (88%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1137 TATAGTGGATTTGATGTTGGCCTTACTTACGCATTGCTGTTAGGAGGAATAGCTCTGGAT 1196
||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 4 TATGGTGGATTTGATGTTGGCCTTACTTACGCATTGTTGATAGGAGGAATAACTCTGGAT 63
Query 1197 TGCATCGCTCTTATCATGTTCTGTGCATCTGATTGGACGTTTGTCAGATTGAGGA-AGAT 1255
| ||| ||||| |||||||||| ||||||||| ||||||| |||||||||||||| | ||
Sbjct 64 TCCATTGCTCTGATCATGTTCTATGCATCTGACTGGACGTATGTCAGATTGAGGACA-AT 122
Query 1256 GAAGGACGAAGTGGACGAT 1274
||| || || ||||| |||
Sbjct 123 GAAAGATGAGGTGGATGAT 141
> Ahg948440 jgi|Araly1|948440|scaffold_800327.1
Length=2472
Score = 126 bits (68), Expect = 8e-28
Identities = 159/203 (78%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 2573 TAAGGAGGACGACTCAGAGATGTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTTC 2632
|||||| ||||| || || |||| | ||| | ||| |||| ||||| ||| ||||||
Sbjct 2229 TAAGGAAGACGAAGAAGTGAAGTGGGAGATAGTAAGCAAAGTCTGGGTGGAGATGCTTT- 2287
Query 2633 G-TATGCAGCGACAAAGTGTGGCGCTATAGAACACGCAGCTCAGCTAAGCAAAGGAGGAG 2691
| |||| ||| || | |||| | | | | |||| | ||| || || ||||| ||||| |
Sbjct 2288 GCTATGGAGCAACTTATTGTGACCCGAAACAACATGTAGCGCAACTGAGCAATGGAGGGG 2347
Query 2692 AACTCATAAGCTTTGTTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCAAA 2751
|| |||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2348 AATTCATCAGCTTTGTTTGGCTATTGATGGCTCATTTTGGCCTTGGAGACCAATTCCAGA 2407
Query 2752 TCAACCA-AGGAGA-TGCCAGAG 2772
|| | | |||||| ||| ||||
Sbjct 2408 CCA-C-AGAGGAGAATGCTAGAG 2428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112785215445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5