BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45490.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948429 jgi|Araly1|948429|scaffold_800316.1 1543 0.0
Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1 464 7e-130
Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311 418 6e-116
> Ahg948429 jgi|Araly1|948429|scaffold_800316.1
Length=1105
Score = 1543 bits (835), Expect = 0.0
Identities = 1021/1111 (92%), Gaps = 12/1111 (1%)
Strand=Plus/Plus
Query 41 TTTCTCCGTTTTTCCTTGAATATGCCTTCAAAAAAT-CTACAACAGGCAGTCCTCACAAA 99
||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1 TTTCTCCGTTTTT-CTTGAATATGCCTTCAAAAACTAC-ACAACAGGCAGTCCTCACAAA 58
Query 100 CGAATTCACAACCAACTTCATTACGACCTGTAAGGACTGGCTCGACGTAAATGGTCTTGC 159
|||||||||||||| ||||| || || ||| ||||||||||| | |||||||||||||
Sbjct 59 CGAATTCACAACCACCTTCAATAAGAATTGTGAGGACTGGCTCAAAATAAATGGTCTTGC 118
Query 160 TAAAGGAAACTTGGAGAAGAAGAGAGATGATAATGAAGAAGAAGAGCGTCTGAAAACCGA 219
||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 119 CGTAGGCACCTTGGAGAAGAAGAGAGATGAGGATGAAGAAGAGGAGCGTCTGAAAACCGA 178
Query 220 GTCTAAACTTCCGGGCCATGACATCCACGGTTTCGATAACGAGATCAAGTCATTGCAACA 279
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 CTCTAAACTTCCGGACCATGACATCCACGGTTTCGATAACGAGATCAAGTCATTACAACA 238
Query 280 CTTCTTGTTGGATCAGAAGGTTAGGAGGGAGTTCAAGAGTCTTGTGATTGTCGGAGAATA 339
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 239 CTTCTTGTTGGATCAGAAGGTTAAAAGGGAGTTCAAGAGTCTTGTGATTGTAGGAGAGTA 298
Query 340 TGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATGAAGCTGTGAAGAGTGT 399
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 299 TGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTTAATGATGAAGCTGTCAAGAGTGT 358
Query 400 TTATGCTCCCAGGGTTTGGGTGTCTATGGAAAACAAAGAATCTAAGGAGGGACTTGATGG 459
||||||||||||||||||||| ||||||| | ||| ||||||| ||||| |||| ||||
Sbjct 359 TTATGCTCCCAGGGTTTGGGTTTCTATGGCTAGCAAGGAATCTACGGAGGAACTTAATGG 418
Query 460 GAAGATATGTGTGTTGAAGAAGATCTTGA-AGGGTCTTGGAGTTGAAGAGTT-AATCCTC 517
||||||||| ||||||||||||||||||| | |||||||||||| |||| || ||||||
Sbjct 419 GAAGATATGCGTGTTGAAGAAGATCTTGACA-GGTCTTGGAGTTAAAGA-TTCCATCCTC 476
Query 518 GAAACTATCAGTACTGATGCCAAACAAGAATTTAAGGACAATGAGGAAGTTGCAAGCAAT 577
||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 GAAACTATCTCTGCTGATGCCAAACAAGAATTTAAGGACAATGCGGAAGTTGCAAGCAAT 536
Query 578 CAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAGGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTC 596
Query 638 TATGCACTTCACTTGAATCTGAGGTGGAAGAAATATCTGATTGTGTTTGATGATGTTCGG 697
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 597 TATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGATGTCCGG 656
Query 698 GAAAACGATAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGA 757
|||| |||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||
Sbjct 657 GAAATTGATAACTGGGACGAGAAGCTCGATGTGAAACTCAACGAGGATGAGAAATGGGGA 716
Query 758 AAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGA 817
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAGTTTCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGA 776
Query 818 GATGAGAATCTGGCGAAGAACCTTGTTGCTCAGAAACATGAGATCCATCGTCTTTGGCCG 877
|||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct 777 GATGAGAATCTGGCGAAGAAGCTAGTTTCTCGGAAACATGAGATCCATCGTCTTTGGCCG 836
Query 878 CTGTCTGATCATCAGAGTGTCTGGAAGATATATGATGCAGTGGTT-AAAGATAAACAGAA 936
|||||||||||||||||||||||||||||||||||||| ||| || ||| | | | ||||
Sbjct 837 CTGTCTGATCATCAGAGTGTCTGGAAGATATATGATGCTGTGATTCAAA-AGAGAGAGAA 895
Query 937 AGAGTCACCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAATAAGTCTCGTGGTCT 996
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 896 AGAGTCACCAAGGAACGACAAGAAATGCATAGATGAGCTAATGAACAAGTCTCGTGGTCT 955
Query 997 TCCTCTGGCTGCCAGACTGTTGGCTGAGCGTGATCCCGTCTTTGTTGACGATGAAGTTGG 1056
|||| ||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 956 TCCTTTGGCTGCTAGACTGTTGGCCGAGCTTGATCCCGTGTTTGTTGACGATGAAGTTGT 1015
Query 1057 CCCTGTTGGTTCTACCCATGGACAAACC-GACTCATCGAACCGCCAACCTGCAAACCAGG 1115
| ||| ||||||| |||||||||| || ||| |||||||| ||||| |||||||||||
Sbjct 1016 CACTGGCGGTTCTATCCATGGACAA-CCTGACGCATCGAACAGCCAAACTGCAAACCAGA 1074
Query 1116 CCAGCTCCTGAGAAGTGGATAA-CTTGACTC 1145
|||||||||||||||||||||| | ||||||
Sbjct 1075 CCAGCTCCTGAGAAGTGGATAAACCTGACTC 1105
> Ahg494438 jgi|Araly1|494438|fgenesh2_kg.8__254__AT5G45440.1
Length=1061
Score = 464 bits (251), Expect = 7e-130
Identities = 401/471 (85%), Gaps = 20/471 (4%)
Strand=Plus/Plus
Query 588 GAGAAATTGATAG-AGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTT 646
||||| | | ||| ||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGAAGTAG-TAGAAGAAACAGCGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTT 538
Query 647 CACTTGAATCTGAGGTGGAAGAAATATC-TGATTGTGTTTGATGATGTTCGGGAAAACGA 705
||||||||||||||||||||||| || | ||||||||||||||||||| || ||| | ||
Sbjct 539 CACTTGAATCTGAGGTGGAAGAAGTA-CATGATTGTGTTTGATGATGTGCGAGAAGAGGA 597
Query 706 TAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGAAAGTATCT 765
||| ||| |||| | |||| | | || | |||| || || ||||||||||||||||
Sbjct 598 TAATTGGAACGAGATGCTTCA-G-GACGGT-GAGGA-GA--AGCAATGGGGAAAGTATCT 651
Query 766 TTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAA 825
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTCAGATGGATTCCCTACAGGATCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAA 711
Query 826 TCTGGCGAAGAACCTT-GTTGCTCAGAAACATGAGATCCATCGTCTTTGGCCGCTGTCTG 884
||| |||||||| || ||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 712 TCTAGCGAAGAAA-TTAGTTGCAGAGAAACATGAGATTCATTGTCTTTGGCCGCTGTCTG 770
Query 885 AT-CATCAGAGTGTCTGGAAGATATATGATGCAGTGGT-T-AAAGATAAACAGAAAGAGT 941
|| | | | ||||| ||||||||||| || ||| | | | ||||| | | |||||||
Sbjct 771 ATTCTT-ACAGTGTTTGGAAGATATACGAAGCAATTATCTTAAAGAGAGA--GAAAGAGC 827
Query 942 CACCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAATAAGTCTCGTGGTCTTCCTC 1001
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 828 CTCCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTC 887
Query 1002 TGGCTGCCAGACTGTTGGCTGAGCGTGATCCCGTCTTTG-TTGACGATGAA 1051
||||||| |||||| ||||| | | |||||| || || | |||| |||||
Sbjct 888 TGGCTGCTAGACTGCTGGCTAAACTTGATCCTGTGTT-GCTTGAAAATGAA 937
Score = 342 bits (185), Expect = 3e-93
Identities = 256/290 (88%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 221 TCTAAACTTCCGGGC-CATGACATCCACGGTTTCGATAACGAGATCAAGTCATTGCAACA 279
||| ||||||| ||| |||| ||| | |||||||| || |||||||| |||||||||||
Sbjct 170 TCTGAACTTCC-GGCTTATGAAATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACA 228
Query 280 CTTCTTGTTGGATCAGAAGG-TTAGGAGGGAGTTCAAGAGTCTTGTGATTGTCGGAGAAT 338
||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||
Sbjct 229 CTTCTTGTTGGATCAAAAGGTTTA-CAAGGAGTTCAAGAGTCTTGTGATTGTCGGAGAAC 287
Query 339 ATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATGAAGCTGTGAAGAGTG 398
| |||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||
Sbjct 288 ACGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATTATGATGTTAAGAGTG 347
Query 399 TTTATGCTCCCAGGG-TTTGGGTGTCTATGGAAAACAAAGAATCTAAGGAGGGACTTGAT 457
||||||| |||| || ||||||| || ||| | ||| |||||||||||||||||||||
Sbjct 348 TTTATGC-CCCATGGATTTGGGTTTCCATGCTTAGCAATGAATCTAAGGAGGGACTTGAT 406
Query 458 GGGAAGATATGTGTGTTGAAGAAGATCTTGAAGGGTCTTGGAGTTGAAGA 507
||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 407 GGGAAAATATGTGTGTTGAAGAAGATCTTGAAGGCTCTCGGAGTTGAAGA 456
> Ahg915560 jgi|Araly1|915560|Al_scaffold_0008_311
Length=852
Score = 418 bits (226), Expect = 6e-116
Identities = 397/479 (83%), Gaps = 14/479 (3%)
Strand=Plus/Plus
Query 580 GGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTCTA 639
||||||||||||||||||| ||||||| | ||||||||||||| | |||| | |||||||
Sbjct 318 GGAAGCTGGAGAAATTGATGGAGAGACAGCGAAAGAGAAGGAGTTTTCTGTTTTGCTCTA 377
Query 640 TGCACTTCACTTGAATCTGAGGTGGAAGAAATATCTGATTGTGTTTGATGATGTTCGGGA 699
|||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 378 TGCACTGCATTTGAATCTGAGGTGGAAGAAGTATCTGATTGTATTTGATGATGTGCGAGA 437
Query 700 AAACGATAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGAAA 759
| || || ||||| || ||||| |||| |||| ||||||||| |||||||||||| ||
Sbjct 438 CGAGGACAATTGGGATGAGAAGCTCGATGTGAAATTCAAGGAGGGTGAGAAATGGGGGAA 497
Query 760 GTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGAGA 819
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 498 GCATCTTTCAGATGGATTCCCTAAAGAGTCTGGTGGGAGAGTCATATACACGACCAGGGA 557
Query 820 TGAGAATCTGGCGA-AGAACCTTGTTGCTCA-GAAACATGAGATCCATCGTCTTTGGCCG 877
|||| ||||| | |||| || ||||| | ||| |||||||| ||||||||||||||
Sbjct 558 AAAGAAACTGGC-ACAGAAGCTAGTTGCAGAAGAA-CATGAGATACATCGTCTTTGGCCT 615
Query 878 CTGTCTGAT-CATCAGAGTGTCTGGAAGATATATGATGCAGTGGTTAAAGATAAACA-GA 935
|| ||||| | | ||||||||||||| |||||| | | || | | |||| || | ||
Sbjct 616 TTGACTGATAC-TGAGAGTGTCTGGAACATATATAAAGAAGCGCTGGAAGAGAATGAAGA 674
Query 936 AAGAGTCACCAAGGAACGACAAGAAATG-TATAGATGAGCTGATGAATAAGTCTCGTGGT 994
| ||| | |||||||||||||||||||| | || |||||||||||| ||||||||||||
Sbjct 675 A-GAGCCTCCAAGGAACGACAAGAAATGCTC-AGTTGAGCTGATGAACAAGTCTCGTGGT 732
Query 995 CTTCCTCTG-GCTGCCAGACTGTTGGCTGA-GCGTGATCCCGTCTTTGTTGACGATGAA 1051
||||| || || || |||| |||||| | || | |||||| ||| || ||| ||||
Sbjct 733 CTTCC-CTTAGCCGCTAGACAGTTGGCC-ACGCTTCTTCCCGTGTTTCTTTACGTTGAA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5