BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45500.1
Length=2626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494434 jgi|Araly1|494434|fgenesh2_kg.8__250__AT5G45500.1 2191 0.0
Ahg356470 jgi|Araly1|356470|fgenesh1_pg.C_scaffold_8000257 577 2e-163
> Ahg494434 jgi|Araly1|494434|fgenesh2_kg.8__250__AT5G45500.1
Length=2327
Score = 2191 bits (1186), Expect = 0.0
Identities = 1441/1562 (92%), Gaps = 26/1562 (2%)
Strand=Plus/Plus
Query 483 AGAAGGCCCAGATGATCATCATATTCCTAAGCTGCAACGAAATCTTCGTTTGCTTAAGGA 542
||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 341 AGAAGGCCCGGACGATCATCATATTCCTAAGCTGCAACGTAATCTTCGTTTGCTCAAGGA 400
Query 543 GGACGTGGCTAAGCTGCAATATCTCCGCAGTGAAGTCGCAGAGGAGGTGTGGAAACATAT 602
||||||| |||||||||| |||| |||| ||||| ||||| |||||||||||||||||
Sbjct 401 AGACGTGGTTAAGCTGCAAGATCTTCGCACCGAAGTTGCAGAAGAGGTGTGGAAACATAT 460
Query 603 TCGTCCACTTGAATTGCTGCTTGA-AAATGTGGCAAAAGAGCAGAAGAAAAACCCTACGA 661
|||||||||||||||||||||||| ||| |||| |||| || | |||| ||||| |||
Sbjct 461 TCGTCCACTTGAATTGCTGCTTGATAAA-GTGG-AAAA-AG-GGGAGAAGGACCCTTCGA 516
Query 662 AACCCCCCTTGACCTTAGGTATGAAGAAAGACTTGGACGATATCAACAAGAAGATCTTTA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AACCCCCCTTGACCTTAGGTATGAAGAAAGACTTGGACGATATCAACAAGAAGATCTTTA 576
Query 722 ACTTGATGTGTCAAGTCCCCTTGTTGCCCAACAAGCGTAAAAAAGCCAAAGGATTGGATG 781
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 577 ACTTGATGTGTCAAGTCCCCTTGTTGCCCAACAAGCGTAAAAATGCCAAAGGATTAGATG 636
Query 782 ATGACGATGGCGACGGGGATAATAATAACGGCAAAGGAATTGTTTGCCTGCCCGGGATCC 841
|||||| || || |||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 637 CTGACGACGGTGA-GGGG--GATAATAACGGCAAAGGAATTGTTTGCCTTCCCGGGATCC 693
Query 842 ATGCAAATAAAGCAGATCTTAGAAGTCGCGCGGTTTTCAGATATGTGCTACGCGAATTCG 901
|||| ||||||| |||||||| ||| |||||||||||||||||||| ||| |||||||||
Sbjct 694 ATGCTAATAAAGAAGATCTTAAAAGACGCGCGGTTTTCAGATATGTACTAGGCGAATTCG 753
Query 902 AGGAACTTAGTGATCAACGGAAGATCTGCCTGCTGACCTTCGCTGTCTTCCCTGAAAATC 961
||||||| |||||||||| |||| |||||||||||| ||| |||||||||||||||||||
Sbjct 754 AGGAACTCAGTGATCAACAGAAGTTCTGCCTGCTGAGCTTTGCTGTCTTCCCTGAAAATC 813
Query 962 AAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATGGGGGAGGGCATTCTGAGTACTA 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 814 AAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATGGGGGAGGGCATTCTGAGTTCTC 873
Query 1022 AAGACATATCATCACAAGAGGGCACTGAAGAGGTCATTCTCAAACCCGAAGATGTTGTGA 1081
|||||||| |||| | || | ||| || ||||||||||||||||||||||||||
Sbjct 874 AAGACATACCATC-C--GA----A---AAG-GG-CATTCTCAAACCCGAAGATGTTGTGA 921
Query 1082 AGGTCATTCTTAAGGATTTCACGGATAGAAACTTGATTGAACCTGTTGAAATCAAACGCA 1141
||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGGACATTCTTGATGATTTCAAGGATAGAAACTTGATTGAACCTGTTGAAATCAAACGCA 981
Query 1142 AAGTCG-AGCCAAGTAGCTATAAGATGGCCCCCTTTGTGCATGCTTCAGTGGTTCTTATC 1200
||| | |||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 982 AAG-AGAAGCCAAATAGCTATAAGATGGCCCCTTTTGTGCATTCTTCAGTGGTTCTTATC 1040
Query 1201 TCCAAGGAGATAGGGCTTTTTGATATGTATGATATAAAGGACAAGCCAGTCATGAAGA-A 1259
||||||||||||||||| |||||||||||||||| ||| || |||||| |||||| | |
Sbjct 1041 TCCAAGGAGATAGGGCTATTTGATATGTATGATAAAAAAGAGAAGCCAACCATGAA-ACA 1099
Query 1260 ATCAGGAATGCACAAGGTATGCCTTGTGGAAGGGTCGTCAAGCCAGCAAGAAGCAAAAGC 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ATCAGGACTGCACAAGGTATGCCTTGTGGAAGGGTCGTCAAGCCAGCAAGAAGCAAAAGC 1159
Query 1320 TaaaaaaaTGGAAGATGTAGATCATATTGAAACTGTGTTCAATGTTTCGGAGAGGTTTCC 1379
||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1160 TAAAAAAATGGCAGATGTAGATCAGATTGAAACCGTGTTCAATGTTTCTGAGAGGTTTCC 1219
Query 1380 GGATTTCACATTCAAGTGG-TTCTCGGAGGATAAACCAACGCGAAATAAGTTGACTCTGT 1438
||||||||||||||||||| || || |||||||||||||| ||||||||| ||||||| |
Sbjct 1220 GGATTTCACATTCAAGTGGTTTTTC-GAGGATAAACCAACACGAAATAAGCTGACTCTAT 1278
Query 1439 CAAAAGTTACGTATCAAAAGCTCAAGGTGTTCTATCTGGGAAGATGGGAGAGAACTGCCA 1498
|||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1279 CAAAAGCTACGTATCCAAAGCTCAAGGTTTTCTATCTGGGAAGATGGGAGAGAACTGCTA 1338
Query 1499 AGCGCCACATCGAGGTGGAGAATCCTGAGCTTATGAAAAATTTGAAGCGTATGATTAAAC 1558
||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 1339 AGCGCCACATCGAGGTGGAGAATCCAGAGCTTATGAAAAACTTGAAGCATATGATTAAAC 1398
Query 1559 TCAAGCTTCTGAGTTTTCAAGGGATCTCAAGAATTGAACGACTTGACGATGCTGTCTGCA 1618
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct 1399 TCAAGCTTCTGAGTTTTCAAGGGATCTCAAGAATTGAAAGACTTGACAATGCTGTCTGTA 1458
Query 1619 AGCTTCGTGACCTGATCATCTTGGACCTCAGAGCTTGCTATAATCTGGAGAAACTTCCAG 1678
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1459 AGCTTCGTGAGCTGATCATCTTGGACCTCAGAGCTTGCTATAATCTTGAGAAACTTCCAG 1518
Query 1679 ACAAGATAGATTCACTCAAGGCGCTTATCTACTTGGACATTACAGATTGCTACATGATAG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 ACAAGATAGATTCACTCAAGGCGCTTATCTACTTGGACATTACAGATTGCTACATGATAG 1578
Query 1739 ATCGCATGCCCAAGAGGTTGTCATGGCTTGATAACTTAGAGGTTCTCAAGGGCTTTGTTG 1798
|||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 1579 ATCGCATGCCCAAGAGGTTGTCGTGGCTGGATAACTTGGAGGTTCTCAAGGGCTTTGTGG 1638
Query 1799 TCAGTGATGCTACAGATGAAGAGACGGTCTGCACACTGGCTGAGTTGGTGCACTTGAAGA 1858
|||||||||||| ||||| ||||| |||||||||||||||||||||||| | |||||||
Sbjct 1639 TCAGTGATGCTATTGATGATGAGACTGTCTGCACACTGGCTGAGTTGGTGGAGTTGAAGA 1698
Query 1859 AGCTGAGAAAGCTAAGTATTTCAATAAACAAAGAAAATTTCAGCATAGATGATGTGTTCG 1918
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1699 AGCTGAGAAAGCTAAGTATTTCAATAAACAAAGAAGATTTCAGCATAGTTGATGTGTTCG 1758
Query 1919 TGGCTGTAAAGAGTTTCAAAAAACTGGAAAAGTTGAAGGTTGCGTGGGGAGGTATAAATA 1978
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1759 TGGCTGTAAAGAATTTCAAAAAACTGGAAAAGTTGAAAGTGGCGTGGGGAGGTATAAATA 1818
Query 1979 CACATCCTCAGGGCAAAGGCGTAGATAGCGAAAAGGGGGACGAAAATGTTAAGCCAAAGG 2038
||||||||||| ||||||||||||| | |||||||||| || ||| |||||||||||||
Sbjct 1819 AACATCCTCAGGACAAAGGCGTAGATGGAGAAAAGGGGGTCGGAAAGGTTAAGCCAAAGG 1878
Query 2039 AG 2040
||
Sbjct 1879 AG 1880
Score = 590 bits (319), Expect = 2e-167
Identities = 374/401 (93%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 2049 GATCTTGGAAAGGGCTGCAACCATGTTCCGTAAGGAGAAAGATCCCACAGCGCCAGAGCT 2108
|||||||||||| || || |||||||||||||||||||||| ||||| || |||||||||
Sbjct 1928 GATCTTGGAAAGAGCGGCGACCATGTTCCGTAAGGAGAAAGGTCCCAAAGAGCCAGAGCT 1987
Query 2109 TCCAAAGACATTGAAGAAACTGGACCTGCAATGTTTTCCTGGTGAACATCTTCCTGAATG 2168
||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1988 TCCGGAGACATTGAAGAAACTGGACCTGCAGTGTTTTCCTGGTGAACTTCTTCCTGAATG 2047
Query 2169 GCTTGAGCCTGATAATCTACTTAATGTGGAAAAACTCTACATTAAAGGAGGAATCAAACT 2228
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 2048 GCTTGAGCCTAATAATCTACGTAATGTGGAAAAACTCTACATTAAAGGAGGAACCGAACT 2107
Query 2229 TACTGGATTTGGAAAGTCACTACCTAGCCA-GAATTCGAAATGCAAAGTTACCGTTTTAC 2287
|||||||||||||||||||||||||| | | ||| || | |||||||||||||||||||
Sbjct 2108 TACTGGATTTGGAAAGTCACTACCTATCGAGGAA-ACGCACTGCAAAGTTACCGTTTTAC 2166
Query 2288 GTCTGAAGTTTCTTCCAAAACTAAAAGTGGAGTGGAGGGATTTGAGCAAAAGGTACTTTC 2347
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2167 GACTGAAGTTTCTTCCAAAACTAAAAGTGGAGTGGAGGGATCTGAGCAAAAGGTACTTTC 2226
Query 2348 CGGAACTCAAGTTCTTGGAGAAGTATCAGTGCCCTCAAGTTAGTCTCTGCCCCTGCGATG 2407
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 CAAAACTGAAGTTCTTGGAGAAGTATCAGTGCCCTCAAGTTAGTCTCTGCCCCTGCGATG 2286
Query 2408 GAATTGGAATCTGGCGCAAGCCTGAAGAAGATGAAGTCTAA 2448
||||||||||||||||||||||||||||| |||||||||||
Sbjct 2287 GAATTGGAATCTGGCGCAAGCCTGAAGAAAATGAAGTCTAA 2327
> Ahg356470 jgi|Araly1|356470|fgenesh1_pg.C_scaffold_8000257
Length=2118
Score = 577 bits (312), Expect = 2e-163
Identities = 502/590 (85%), Gaps = 28/590 (5%)
Strand=Plus/Plus
Query 820 ATTGTTTGCCTGCCCGGGATCCATGCAAATAAAGCAGATCTTAGAAGTCGCGCGGTTTTC 879
||||||||| ||||||| |||||||||||| ||| ||| || | ||| | ||| |||||
Sbjct 553 ATTGTTTGCTTGCCCGGCATCCATGCAAATGAAGAAGACCTCAAAAGACTCGCCGTTTTT 612
Query 880 AGATATGTGCTACGCGAATTCGAGGAACTTAGTGATCAACGGAAGATCTGCCTGCTGACC 939
|||||||| | | ||||| | || || |||||||||||| || ||| |||||||| | |
Sbjct 613 AGATATGTACAAGGCGAACTAGATAAAGTTAGTGATCAACAGAGGATGTGCCTGCTTAGC 672
Query 940 TTCGCTGTCTTCCCTGAAAATCAAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATG 999
|||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 673 TTCGCTGTGTTCCCGGAGAATAAAGAGGTGAATAGAACAATGCTGATGTATTGGTGGATT 732
Query 1000 GGGGAGGGCATTCTGAGTACTAAAGACATATCATCACAAGAGGGCACTGAAGAGGTCATT 1059
|||||||||||||||||| || |||||||| |||| | || | ||| || ||||
Sbjct 733 GGGGAGGGCATTCTGAGTTCTCAAGACATACCATC-C--GA----A---AAG-GG-CATT 780
Query 1060 CTCAAACCCGAAGATGTTGTGAAGGTCATTCTT-AAGGATTTCACGGA-TAGAAACTTGA 1117
||||||||||||||||||||| ||| ||||||| | || ||||||||| || |||||||
Sbjct 781 CTCAAACCCGAAGATGTTGTGCAGGACATTCTTGATGG-TTTCACGGAGAAG-AACTTGA 838
Query 1118 TTGAACCTGTTGAAATCAAACGCAAAGTCGAGCCAAGTAGCTATAAGATGGCCCCCTTTG 1177
|| |||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 839 TTCAACCTGTTGAAAACAAACGCAAAATGGAGCCAAGTAGCTATAAGATGGCCCCTTTTG 898
Query 1178 TGCATGCTTCAGTGGTTCTTATCTCCAAGGAGATAGGGCTTTTTGATATGTATGAT-ATA 1236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 899 TGCATGCTTCAGTGGTTCTTATCTCCAAGGAGATAGGGCTTTTTGATATGTATGATGA-A 957
Query 1237 AAGGACAAGCCAGTCATGAAGAAAT-CAGGAATGCACAAGGTATGCCTTGTGGAAGGGTC 1295
||||| |||||| |||||| | || || || || ||||||||||||| |||||||||||
Sbjct 958 AAGGAGAAGCCAACCATGAA-ACATTCAAGACTGAACAAGGTATGCCTAGTGGAAGGGTC 1016
Query 1296 GTCAAGCCAGCAAGAAGCAAAAGCTaaaaaaaTGGA-AGATG-TAGATCAT-ATTGAAAC 1352
||||||||||| |||||||||||||||||||||||| || | | ||| | ||||||||
Sbjct 1017 GTCAAGCCAGCCAGAAGCAAAAGCTAAAAAAATGGACAG-TCCTC-ATC-TGATTGAAAC 1073
Query 1353 TGTGTTCAATGTTTCGGAGAGGTTTCCGGA-TTTCACATTCAAGTGGTTC 1401
|||||||||||||| |||||||| || || ||| ||| || |||||||
Sbjct 1074 CGTGTTCAATGTTTCCGAGAGGTTCCCAGAATTT-ACACGCAGGTGGTTC 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99034637000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5