BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45520.1
Length=3504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356455 jgi|Araly1|356455|fgenesh1_pg.C_scaffold_8000242 1653 0.0
> Ahg356455 jgi|Araly1|356455|fgenesh1_pg.C_scaffold_8000242
Length=2307
Score = 1653 bits (895), Expect = 0.0
Identities = 1326/1530 (87%), Gaps = 45/1530 (3%)
Strand=Plus/Plus
Query 138 ATCTTGGTGGGTTC-GTGTCAGAG-GAAGTTTGAAAAGAATTGGTAAGGCGAAGAAGGAG 195
|||||||||||||| || |||||| || || |||| |||| |||||| |||||| |||
Sbjct 330 ATCTTGGTGGGTTCGGT-TCAGAGAAAAACTT-AAAAAAATTTGTAAGGTGAAGAACGAG 387
Query 196 GCTTTC-AACAATGCTAGTGACAGTGGAGGTAGTCAAGGTGGAAGCAGAAGAAGCGTGCA 254
|| | ||| |||| || || ||| || |||||||||||||||||||||| | |||
Sbjct 388 GC-AACAAACCATGCAAGCGATAGTAAAGACAGTCAAGGTGGAAGCAGAAGAATCATGCG 446
Query 255 AAACATTGAAGAAGATCAAAAGAATGAAGACCTCGAGATCCGGAAATTGCAGAATGACAT 314
| ||| ||| |||||| ||| ||| ||||||||| |||||||||||||||| ||||||
Sbjct 447 ATACACTGACGAAGAT--GAAG-ATGCAGACCTCGACATCCGGAAATTGCAGAGTGACAT 503
Query 315 TCGTCAGATGATAGCTGCATTTAAGAATTTAACTCAGTTTC-AAACTGATATGAGCAAGA 373
| ||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 504 TGGTCAGATGATATCTGCATTTAAGAATTGGACTCAGTTTCAAAAC-AATATGAGCAAGT 562
Query 374 ATTTGGAGCGTGATCTTCGTTCAACTA-AGTTAATAGCAATACTACAAAAGAAGAACTCG 432
|||||| |||||||||||||| || ||| |||||||||||| |||| | ||
Sbjct 563 CGTTGGAGAATGATCTTCGTTCAAGTATGGTT-GGAGCAATACTACAGAAGACGGGTTCA 621
Query 433 TTCGGA-TCCCGCTCTCACGTTGTCAAGGAAATCAGAAGAAAGGTCTCCGCCTTGAAGTG 491
|| | |||||| |||| | | |||| ||||||||||||||| ||||||||||||||||
Sbjct 622 ATC-AAGTCCCGCACTCAGGATCTCAAAGAAATCAGAAGAAAGATCTCCGCCTTGAAGTG 680
Query 492 CCAGATCCCATCATTGCTCCACAAACAATCATCAAGAAAGATAAGCATCACGGATTCTCA 551
|||||||||||||| |||| ||||||||||||| || | ||||||||||||| ||||
Sbjct 681 CCAGATCCCATCATCGCTCTACAAACAATCATCCAGGGTGTTAAGCATCACGGAATCTCT 740
Query 552 AACCGCTGAGGAAAATGATGAGATCAGTGAGACCGGGATTGACATATACTTGCCGGGCCT 611
||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct 741 AACCGATGAGGATATTGATGAGATCAATGAGACCGGGAGCGACATATACTTGCCCGACCT 800
Query 612 CCAC-TTCTCTGAAAAATTCAAAAC-TTCCTCTGCTTTTGAAGAAGTTGTTGAGAAATTT 669
|||| || |||||| | ||| |||| |||||| | ||||||||| ||||| |||||||||
Sbjct 801 CCACGTT-TCTGAAGATTTC-AAACATTCCTCAGGTTTTGAAGACGTTGTAGAGAAATTT 858
Query 670 CAAGGCCTTGATGACTTCACTCAGAAGCTTTGCTTGCTT-TCCTTCGCCGTGTTCCCGGA 728
||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||
Sbjct 859 CAAGGCCTTGATGACTTCACTCAAAAGCTCTGCTTG-TTGTCCTTCGCCGTGTTCCCGGA 917
Query 729 AAACAGAGAGGTTAAAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTTATCAG 788
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 918 AAACAGAGAGGTTACAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTCATC-G 976
Query 789 -CTGTGATGATTCTGAAAACTTAGTAACGAGAATTCTTGATTCATTCTCAGAC-AAAAAA 846
||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 977 ATTGTGATGATTCTGAAAACTCAGTAACGAGAATTCTTGATGCATTCTCAG-CAAAAAAA 1035
Query 847 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAGTAGTTATAAGATGGAGCCT 906
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1036 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAATAGTTATAAGATGGAGCCT 1095
Query 907 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTATATAAC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1096 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTCTACAAC 1155
Query 967 AAGAATGGGAAGCTTATCATGAAGAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1026
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1156 CATAATGGGAAGCTTATCATGAAAAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1215
Query 1027 TCCTCGTTGCTACGAGACGCAAAAACATCTGTTATGGAACCAAAAACCTTGCAGACGGTT 1086
||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||
Sbjct 1216 TCCTCGTTGCTACGAGACGCAAAAACATCTGCAATGAAACCGAAAACATTGCAGACGGTT 1275
Query 1087 TTCAATTCCTCTGAACGGTACCCAGACTTCACATTCAAGTGGTTTCCATTAATGGATTCA 1146
||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||
Sbjct 1276 TTCAATTCCTCTGAACGGTTCCCTGATTTCACATTCAAGTGGTTTCCGTTAATGGATTCA 1335
Query 1147 CTTAGAGTGCTTTACTTGGGAAGATGGGAGCAGACAGCTAAGCGCCACATTGAAGTTGAG 1206
||||||||||||| || ||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1336 ATTAGAGTGCTTTATTTAGGAAGATGGGAGCGGATGGCTGAGCGCCACATTGAAGTTGAG 1395
Query 1207 AGCACAGAGTTTCTTAAAAATATGAAGTCCCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1266
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1396 AGCACGGAGTTTCTTAAAAATATGAAGTCTCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1455
Query 1267 GGGATCTCGAGGA-T-AGAAAGGCTCGAGAACTCAATTTGCGCACTCCCCGAGTT-AGTG 1323
|||||||| |||| | | |||| |||| ||||||||||| || |||| | || | ||
Sbjct 1456 GGGATCTC-AGGAATCAAAAAGA-TCGATAACTCAATTTGTGCGCTCCAAAAATTGA-TG 1512
Query 1324 ATCTTGGATCTTAAAGCATGCTACAATCTAGAGGTTCTTCCTAGTGATATAGGCTTGTTT 1383
||||||||||||| |||||||||| ||||| |||||||||||| |||||||||| ||
Sbjct 1513 ATCTTGGATCTTAGAGCATGCTACGATCTACAGGTTCTTCCTAACGATATAGGCTCACTT 1572
Query 1384 GAGAAACTGATTTACTTGGATGTATCAGAGTGC-TATATGCTAGATCGCATGCCTAAGGG 1442
||||| ||||||||||||||||||||||| ||| | || ||||||| |||||||| | |
Sbjct 1573 GAGAATCTGATTTACTTGGATGTATCAGAATGCCT-TAAGCTAGATTGCATGCCTGATAG 1631
Query 1443 GATTGCAAAACTCTCCAG-ATTACAAGTTCTGAAAGGATTTGTGATTAGTGAGTCGGATC 1501
| ||| ||||||||| || |||||| ||||| || ||||||||||||||| |||| |||
Sbjct 1632 GTTTGAAAAACTCTC-AGGATTACAGGTTCTTAAGGGATTTGTGATTAGTCAGTCAGATG 1690
Query 1502 ATGAAAATAATTGTGCAGTTAAACATCTGGTGAATCTAAGGAAGCTAAGCATAAC-AGTA 1560
||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||
Sbjct 1691 ATGAACACAATTGTGCAGTTAAACACCTGGTGAATCTGAGGAAGCTAAGCATAACCA-TA 1749
Query 1561 AACAAAT-ACTCTTTT-AAGGTGGAAAGTCTGATGGAGTCGTTGACAGGAC-TCCAGGGA 1617
|| |||| || | ||| |||| |||| ||| || ||||| |||| || || || || |
Sbjct 1750 AA-AAATTAC-CGTTTCAAGGCAGAAAATCTAATTGAGTCATTGAGAG-ACCTCAAGCAA 1806
Query 1618 CTTGAGAGTCTGAAAATT-GCGTGGGGAGC 1646
||||||||||||| | || || ||| ||||
Sbjct 1807 CTTGAGAGTCTGACA-TTCGCATGGAGAGC 1835
Score = 545 bits (295), Expect = 6e-154
Identities = 372/408 (91%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 3086 AAGCAAAA-TGGTTAACGGGAAGGGGAAACCAAACCAAGAAATGGGGAATAGGATGGCAA 3144
|||||||| | ||||| ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1877 AAGCAAAACT-GTTAATGGGAATGTGCAACCAAACCAAGAAATGGGGAATAGGATGGCAA 1935
Query 3145 GAAGATCCAGT-AGTAGATGACACCTATACACTT-CCTTCTAATTTGAAGAAGTTGGAGC 3202
|||||| || | | ||||||| ||||||| | || ||| | |||||||||||||||||
Sbjct 1936 GAAGAT-CAATCAATAGATGATACCTATA-AATTCCCTGATCGTTTGAAGAAGTTGGAGC 1993
Query 3203 TAGAATGTTTCCCTGAAACAAAACCTCCGAGTTGGTTAAATCCCAAAGATCTGAAAAATC 3262
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
Sbjct 1994 TAGAATGTTTCCCTGAAACAGAACCTCCGAGTTGGTTAAATCCCAAAGATCTTAAAGAGC 2053
Query 3263 TTAAAAAGCTCTCCATCAAAGGAGGAAAACTTAGCCGAATCG-GTGATGAGAGTCGAATC 3321
||||||| |||||||||||||||||||||||||| || || | ||||||| ||||||| |
Sbjct 2054 TTAAAAAACTCTCCATCAAAGGAGGAAAACTTAGTCGTAT-GAGTGATGAAAGTCGAAAC 2112
Query 3322 ACAGAAGATAAATGGGACGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 3381
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 ACAGAAGACAAATGGGCCGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 2172
Query 3382 GAGTGGAGAGATTTGCAAA-CTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 3440
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 GAGTGGAGAGATTTG-AAAGCTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 2231
Query 3441 CCCCAAAATCGCATTCTGTCCCACAGATGGTAATGGAGTCTGGACGTC 3488
||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2232 CCCTAAAATCGCATTCTGTCCAACAGATGGTAATGGAGTCTGGAGGTC 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132326181321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5