BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45530.1
Length=2452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494430 jgi|Araly1|494430|fgenesh2_kg.8__246__AT5G45530.1 3624 0.0
Ahg915539 jgi|Araly1|915539|Al_scaffold_0008_290 1877 0.0
Ahg915804 jgi|Araly1|915804|Al_scaffold_0008_555 1310 0.0
> Ahg494430 jgi|Araly1|494430|fgenesh2_kg.8__246__AT5G45530.1
Length=2435
Score = 3624 bits (1962), Expect = 0.0
Identities = 2281/2437 (94%), Gaps = 13/2437 (1%)
Strand=Plus/Plus
Query 18 AACGAGCTTAGTTTTTCCACACCAAAAGAGTAACAACGATGCAAGTGATTCCACCAGCAA 77
||||||||||||||||||| || |||||||||| ||| |||||||||||||||||| ||
Sbjct 1 AACGAGCTTAGTTTTTCCAGACAAAAAGAGTAATAACAATGCAAGTGATTCCACCAAAAA 60
Query 78 TAAAAAAGATATTAGACAAATGGAACATCAGAGGACTTGTGATAATGTCTCTGTTGTTCC 137
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 61 TAAAAAAGATATTAGACAAGTGGAACATCAGAGGACTTGTGATATTATCTCTGTTGTTCC 120
Query 138 AAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGCACATCAAAGAAGTTGCTCGCCG 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGCACATCAAAGAAGTTGCTCGCTG 180
Query 198 CGGTTCTATGGACAGCATATCTTTTAGCGGATTGGACCGCTAATTATGCGGTGTCTCAGA 257
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTTTCTATGGACCGCATATCTTTTAGCGGATTGGACCGCTAATTATGCGGTGTCTCAGA 240
Query 258 TCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGATCCTCCAAAAAACAAGAAGCTTC 317
||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 241 TCACTAAAAACCAAGGGAAAGAACCAGAACCTGACGATCCTCCAAAAAACAAGAAGCTTC 300
Query 318 TTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGGTGGGCCGGACACGATAACCGCGT 377
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 TTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGGTGGTCCGGACACGATAACCGCGT 360
Query 378 TGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTTGTTTGGCCTCGTCTCTCAAGCTC 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTTGTTTGGCCTCGTCTCTCAAGCGC 420
Query 438 TTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAACGTATTATGGCCACCAATTACAC 497
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 421 TTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAACGCACTATGGCCACCAATCACAC 480
Query 498 TTTTATTCATCACAGGAACGATTAAGTACGTGGAGAGGACACGAGCATTGTACTCAGCGA 557
||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 481 TTTTATTCATCACCGCAACGATTAAATACGTGGAGAGGTCACGAGCATTGTACTCAGCGA 540
Query 558 GCTTAGACAAATTCAAAGACAGAATGCTTCAACGAGCAGACGCTGGTTCTAACTACGCTA 617
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GCTTGGACAAATTCAAAGACAGAATGCTTCAACGAGCAGACGCTGGTCCTAACTACGCTA 600
Query 618 AGCTAATGGAAGAATTCGCTTCAAGAAAA-ATGTCAAATCTCCCAACTGAAATCTTCTTA 676
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 601 AGCTAATGGAAGAATACGCTTCAAGAAAAGA-GTCAAATCTCCCAACTGAAATCTTCTTA 659
Query 677 ACCGACGAACCCGACAAGCACGAGAGACCCCCTACACTCGTTAAACCGGACCGAGATTTA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACCGACGAACCCGACAAGCACGAGAGACCCCCTACACTCGTTAAACCGGACCGAGATTTA 719
Query 737 ACCGATCTCGAAATCGTTCAATACGGTTTCAAATTCTTCAACACTTTCAAAGGTCTTGTT 796
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 720 ACCGATCTCGAAATCGTTCAATACGGCTACAAATTCTTCAACACTTTCAAAGGTCTTGTT 779
Query 797 GTTGATCTCATTTTCAGTTTCCGTGAGCGAGACGAAAGTAGAGATTTCTTCAA-AGAGTT 855
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct 780 GTTGATCTTATTTTCAGTTTCCGTGAGCGAGACGAAAGCAGAGATTTCTTCAATA-AGTT 838
Query 856 GAAACCTGGAGAAGCTCTTCGAATTATCGAAACCGAGCTCGGTTTTCTTTACGAATCGAT 915
|||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct 839 GAAACCGGGAGAAGCTCTTCGGATTATCGAAACCGAGCTTGGATTTCTATACGAATCGAT 898
Query 916 GTATACCAAAACCGCAATTCTTCATACCGGAATCGGTACTCTGTTTCGGTTAATTTCCTT 975
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 GTATACGAAAACCGCAATTCTTCATACGGGAATCGGTACTCTGTTTCGGTTAATTTCCTT 958
Query 976 TGGATCACTTCTTTCTTCCTTCTTTGTCTTCCATCGTAGACCGCTAAAGTCCGAAG-ATT 1034
|||||| |||||||||||||||||||||||||||||||| || || ||||| ||| |||
Sbjct 959 TGGATCGCTTCTTTCTTCCTTCTTTGTCTTCCATCGTAGGCCACTTAAGTCT-AAGGATT 1017
Query 1035 TTCATGGAGCAGATGTGGTGATTACTTACGTTTTGTTTATAGTTGGTATCGCGCTTGATC 1094
|||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 1018 TTCATGGAGCAGATGTTGTGATCACTTACATTTTGTTTATAGTTGGTATCGCACTTGATC 1077
Query 1095 TTGCGTCAATGGTCATTTTCTTGCTCTCGGATTGGACATTCGCAGTACTAAGAAACCTTA 1154
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 1078 TTGCGTCAATGGTCATTTTCTTGCTCTCGGATTGGACATTCGCGGTATTGAGAAAGCTTA 1137
Query 1155 AGGATGATCCAGAGGAAAAGAGTACT--T-CTATCGACTCTTTATTCAACTGGTTTCTCG 1211
||||||||||||||||||||| || | | ||||||||| |||| |||| ||||||||||
Sbjct 1138 AGGATGATCCAGAGGAAAAGAATAATAGTTCTATCGACTTTTTACTCAATTGGTTTCTCG 1197
Query 1212 AGTTTAGGAAACCCCGTTGGAAGAAGCATACATGCAACGGAAACCAAACCCACGAGGTAC 1271
|||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |
Sbjct 1198 CGTTTAGGAAACCGCGTTGGAAGGAGCATACATGCAACGGAAACCAGACCCACAAGGTGC 1257
Query 1272 TCTCGACGGGGTTTTT-TACACGTAGATGGTCAGGCACGATCTACGGATTTAACTTCATC 1330
|||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1258 TCTCGACGGGGTTTTTGT-CACGGAGATGGTCAGGCACGATCTACGGATTTAATTTCATC 1316
Query 1331 GGGTTTTGTCTTAAAGCCAAAGTTTCAAGAATCCACCAGAAGAGAAACTGTAACCTATTA 1390
|| |||||||| ||||||||||||||||||||||| ||||||||||||| || | |||
Sbjct 1317 GGATTTTGTCTGAAAGCCAAAGTTTCAAGAATCCATAAGAAGAGAAACTGCAATGTTTTA 1376
Query 1391 GTGTGGGATTACGTGGTTTCGCTATTCGATCTAGTGATAAGAAGAATCCAAATGATGATT 1450
|||||||| | ||||||| | ||||||||||| ||||| ||||||||| ||||| || ||
Sbjct 1377 GTGTGGGAATCCGTGGTTACACTATTCGATCTGGTGATCAGAAGAATCAAAATGTTGTTT 1436
Query 1451 GGATGGATCAAGAATGTTAATAGATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAG 1510
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1437 GGATCGATCAAGAATGTTAATAGATCAATAAGAAGCGTGCTCCGACGGTGGTCTAAAAAG 1496
Query 1511 AATCCGATGATTCGTTGCACAGTTTACCCGTTATATC-TCGTGTTCTTCGCCGGTATTCC 1569
|||| ||||||||||| ||| ||||| ||| ||| || |||| ||||| |||||||||||
Sbjct 1497 AATCGGATGATTCGTTACACGGTTTATCCGATAT-TCCTCGTATTCTTTGCCGGTATTCC 1555
Query 1570 TGAAGTATTCAGAGTCCTTTGGAAATACATTGATCGAATCTTTAGTGTTACATCTTATCT 1629
|||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||| ||
Sbjct 1556 TGAAGTTTTTAGAGTCCTTTGGAAATACGTTGATCGAATCTTCAGTGTTAAAACTTACCT 1615
Query 1630 AGACGGGATTAGGTTCATTTCGAGAGAGCCTTTGACGAAGAATCAATGGGAGTTTATATT 1689
||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1616 AGACGAGATTAGGTTCATTTCGAGAGAGCCGTTGACGAAGAATCAATGGGAATTTATATT 1675
Query 1690 CAATGAGGTCAAGGATAAGTCGGGGTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTC 1749
||||||| | ||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1676 CAATGAGCTGAAGGATAAGTCCAGCTTTGCGGAAACACCTGAAGTTGCAAAGAAAGTGTC 1735
Query 1750 TTGGGCGAGAGGAGAATGGGCTTTACGAGATTCGAAATTGATGGAAGTTGATACGTTGAT 1809
||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct 1736 TTGGGCGAGAGGAGAATGGGCTTTACGAGATTCAAAATTGGCGGAAGTTGATACATTGAT 1795
Query 1810 GCGTTACATAGAGAAAGTTGATTATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGA 1869
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1796 GCGTTATATAGAGAAAGTTGATTATGATCAAAGTCTCCTCCTTTGGCATATTGCTACTGA 1855
Query 1870 GCTCTGTTTTCAAAAAGAAGAAGGTGGGAAGATGGAGAAGCTGAGCAGAGAAGGTTATGA 1929
||||||||||||||||||||| | ||||||||||||||| ||||||| |||| |||||||
Sbjct 1856 GCTCTGTTTTCAAAAAGAAGATGATGGGAAGATGGAGAATCTGAGCAAAGAAAGTTATGA 1915
Query 1930 TGACCGAGAATTCAGCAAGATTATATCGGACTACATGATGTATTTGTTGATAATGCGACC 1989
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1916 TGACCGAGAATTCAGCAAGATTATATCGGATTACATGATGTATTTGTTGATAATGCGACC 1975
Query 1990 GAAGCTAATGTCGGAAGTGGCGGGAATCGGGACTATACGGTTTAGAGATACTAAAGCTGA 2049
||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1976 GAAACTGATGTCGGAAGTGGCGGGAATCGGGACTATACGGTTCAGAGACACTAAAGCTGA 2035
Query 2050 AGCTGAGAGGTTTTTCAAAGGAAGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAG 2109
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2036 AGCTGAGAGGTTTTTCAAAGGACGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAG 2095
Query 2110 TGAGACGGTTCTATTGGTTAGTAACGATATTGAGCCGATACTTGTGAAGGGAGATCGAAG 2169
|||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 2096 TGAGACGGTTTTATTGGTTAGTACCGATATTGAACCGATTCTTGTGAAGGGAGATCGAAG 2155
Query 2170 CAAGTCGGTTCTTTTCGATGCGAGTATGTTGGCGAAAGAGCTTCAGAACTTGAAAGAGAG 2229
||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| ||
Sbjct 2156 CAAGTCGGTTCTTTTTGATGCGAGTATGTTGGCCAAAAAGCTTCAGAATTTGAAAGACAG 2215
Query 2230 TAGTAATGAAGATGGGAAATGGAGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTA 2289
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2216 TAGTAATGAAGATGGGAAATGGAAAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTA 2275
Query 2290 CGCAGCAAGTCATTGTAAAGCGACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCT 2349
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2276 CGCAGCAAGTCATTGTAAAGCGACGGAACATGTGGCGCAACTTAGCAGAGGCGGTGAGCT 2335
Query 2350 TCTTAACTTTGTTTGGTTGTTGATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAA 2409
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2336 ACTTAACTTTGTTTGGTTGTTGATGGCTCACTTTGGATTAGGAGATCAGTTTCAGATCAA 2395
Query 2410 TAAAGGTGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2446
|||||| ||||||||||||||||||||||||||||||
Sbjct 2396 TAAAGGAGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2432
> Ahg915539 jgi|Araly1|915539|Al_scaffold_0008_290
Length=2250
Score = 1877 bits (1016), Expect = 0.0
Identities = 1527/1771 (86%), Gaps = 46/1771 (3%)
Strand=Plus/Plus
Query 702 GACCCCCTACACTCGTTAAACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 761
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GACCCCCGAAACTCGTTAGACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 556
Query 762 GTTTCAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTCATTTTCAGTT-TCCGT 820
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 557 GCTACAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTTGTTTTCAGTTCTA-GT 615
Query 821 GAGCGAGACGAAAGTAGAGATTTCTTCAAAGAGTTGAAACCTGGAGAAGCTCTTCGAATT 880
|||||||||||||| |||||||||||||| ||||||||||| |||||||| || | |||
Sbjct 616 GAGCGAGACGAAAGCAGAGATTTCTTCAATGAGTTGAAACCGGGAGAAGCACTAAGGATT 675
Query 881 ATCGAAACCGAGCTCGGTTTTCTTTACGAATCGATGTATACCAAAACCGCAATTCTTCAT 940
|| ||| ||||||| | |||||| ||||||| ||||| ||| ||||| || ||||||||
Sbjct 676 ATTGAATCCGAGCTTGATTTTCTATACGAATTGATGTTTACTAAAACTGCGATTCTTCAC 735
Query 941 ACCGG-AATCGGTACTCTGTTTCGGTTAATTTCCTTTGGATCACTTCTTTCTTCCTTCTT 999
|| | || |||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 736 AC-GATAACCGGTACTCTGTTTCGGTTAATTGCGTTTGGATCACTTATTTCTTCCTTCTT 794
Query 1000 TGTCTTCCATCGTAGACCGCTAAAGTCCGAAGATTTTCATGGAGCAGATGTGGTGATTAC 1059
||||||||||||||| ||||| ||||| || || |||||||||||||| | ||||||||
Sbjct 795 TGTCTTCCATCGTAGGCCGCTTAAGTCTGAGGAATTTCATGGAGCAGACATTGTGATTAC 854
Query 1060 TTACGTTTTGTTTATAGTTGGTATCGCGCTTGATCTTGC-GTCAATGGTCATTTTCTTGC 1118
|||| ||||| || |||||||||||||||||||| | |||||| ||||| ||||||
Sbjct 855 TTACACATTGTTCATCGTTGGTATCGCGCTTGATCTC-CTGTCAATAGTCATGTTCTTGT 913
Query 1119 TCTCGGATTGGACAT-TCGCAGTACTAAGAAACCTTAAGGATGATCCAGAGGAAAAGAGT 1177
||||||||||||||| | || ||| | || || ||||||||||||||||||||| | | |
Sbjct 914 TCTCGGATTGGACATAT-GCGGTATTGAGTAAGCTTAAGGATGATCCAGAGGAATATAAT 972
Query 1178 ACTTCTATCGACTCTTTATTCAACTGGTTTCTCGAGTTTAGGAAACCCCGTTGGAAGAAG 1237
| || ||||||||||||| |||| |||||||||| ||||||||||| ||||| ||||||
Sbjct 973 AGTTTTATCGACTCTTTACTCAATTGGTTTCTCGCGTTTAGGAAACTGCGTTGTAAGAAG 1032
Query 1238 CATACATGCAACGGAAACCAAACCCACGAGGTACTCTCGACGGGGTTTTT-TACACGTAG 1296
||||||||||| |||||||| ||||||||||| |||||||||||||||| | |||| ||
Sbjct 1033 CATACATGCAATGGAAACCATACCCACGAGGTGCTCTCGACGGGGTTTTGGT-CACGGAG 1091
Query 1297 ATGGTCAGGCACGATCTACGGATTTAACTTCATCGGGTTTTGTCTT-AAAGCCAAAGTTT 1355
||||||||||| |||||||||||| || ||||||||||||||| || |||||||||||||
Sbjct 1092 ATGGTCAGGCATGATCTACGGATTCAATTTCATCGGGTTTTGT-TTGAAAGCCAAAGTTT 1150
Query 1356 CAAGAATCCACCAGAAGAGAAACTGTAACCTATTAGTGTGGGATTAC-GTGGTTTCGCTA 1414
|||||||||| ||||||||||||| || | ||||||||||| | | |||| |||| |
Sbjct 1151 CAAGAATCCATAAGAAGAGAAACTGCAATGTTTTAGTGTGGGAGT-CTGTGGGTTCGATG 1209
Query 1415 TTCGATCTAG-TGATAAGAAGAATCCAAATGATGATTGGATGGATCAAGAATGTTAATAG 1473
|||||| | | | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1210 TTCGAT-TGGATAATAAGAAGAATCCAAATGATGTTTGGATGGATCAAGAATGTTAATAG 1268
Query 1474 ATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAGAATCCGATGATTCGTTGCACAGT 1533
|||| | ||||||||| | |||||||||||||||||||||||||| || ||| || ||
Sbjct 1269 ATCACTCAGAAGCGTGATGAGGCAATGGTCTAAGAAGAATCCGATGTTTTGTTATACGGT 1328
Query 1534 TTACCCGTTATATCTCGTGTTCTTCGCCGGTATTCCTGAAGTATTCAG-AGTCCTTTGGA 1592
|||||||||||| ||||||||||| || ||||||||| |||| ||| | |||| |||||
Sbjct 1329 TTACCCGTTATACCTCGTGTTCTTTGCAGGTATTCCTCAAGTTTTC-GCAGTCTTTTGGG 1387
Query 1593 AAT-ACATTGATCGAATCTTTAGTGTTACATCTTATCTAGACGGGATTAGGTTCATTTCG 1651
| | |||||||||||||| ||||||| |||||||||||||| |||||||||||| |||
Sbjct 1388 G-TCATATTGATCGAATCTTCAGTGTTAAATCTTATCTAGACGAGATTAGGTTCATATCG 1446
Query 1652 AGA-GAGCCTTTGACGAAGAATCAATGGGAGTTTATATTCAATGAGGTCAAGGATAAGTC 1710
| | |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1447 A-ATGAGCCTTTGACGAAGAATCAATGGGAATTTATATTCAATGAGGTAAAGAATAAGTC 1505
Query 1711 GGGGTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTCTTGGGCGAGAGGAGAATGGGC 1770
||||||||||| || || || |||||||| |||||| |||||||||||| ||||
Sbjct 1506 CTACTTTGCGGAAACACCCGACCTTACAAAGAAATTGTCTTCGGCGAGAGGAGAGTGGGT 1565
Query 1771 TTTACGAGAT-TCGAAAT-TGATGGAA-GTTGATACG-TTGATGCGTTACATAGAGAAAG 1826
|||||||||| | || | || ||| || || | | |||||||||||| ||||||| |
Sbjct 1566 TTTACGAGATAT-GAT-TCTGGCAGAAAGT-GAGA-GATTGATGCGTTACGTAGAGAATG 1621
Query 1827 TTGATTATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGAGCTCTGTTTTCAAAAAG 1886
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1622 TTTCTTATGATCAAAGTCTTCTCCTTTGGCATATTGCTACTGAGCTCTGTTTTCAACAAG 1681
Query 1887 AAGAAGGTG-GGAAGATGGAGAAGCTGAGCAGAGA-AGGTTATGATGACCGAGAATTCAG 1944
||||| || ||| ||||||||| || ||| |||| | ||| |||||||| ||||| ||
Sbjct 1682 AAGAAAATGAGGA-GATGGAGAATCTAAGCCGAGATAA-TTACGATGACCGTGAATTTAG 1739
Query 1945 CAAGATTATATCGGACTACATGATGTATTTGTTGATAATGCGACCGAAGCTAATGTCGGA 2004
|||||||| |||||| ||||||||||||||||||||||||||||| || | |||||| |
Sbjct 1740 CAAGATTACATCGGATTACATGATGTATTTGTTGATAATGCGACCAAAATTGATGTCGCA 1799
Query 2005 AGTGGCGGGAATCGGGACTATACGGTTTAGAGATACTAAAGCTGAAGCTGAGAGGTTTTT 2064
|||||| |||||||| |||||| | || ||||| ||| |||||||||||||||||||||
Sbjct 1800 AGTGGCAGGAATCGGAACTATAAGATTCAGAGACACTTTAGCTGAAGCTGAGAGGTTTTT 1859
Query 2065 CAAAGGAAGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAGTGAGACGGTTCTATT 2124
|||||||| ||| |||||| || ||||||||||||||||||||||| ||| | || |||
Sbjct 1860 CAAAGGAAAGCATATCAAGAACCTGAGAGATATGAAACGAGCGAGTAAGATGATTTTATC 1919
Query 2125 GGTTAGTAACGAT-ATTGAGCCGATACT-TGTGAAGGGAGATCGAAGCAAGTCGGTTCTT 2182
||||||||||||| || ||||| || | |||||||||| |||||||||||||||| |||
Sbjct 1920 GGTTAGTAACGATTAT-GAGCCAATG-TATGTGAAGGGAAATCGAAGCAAGTCGGTGCTT 1977
Query 2183 TTCGATGCGAGTATGTTGGCGAAAGAGCTTCAGA-ACTTGAAAGAGAGTAGTAAT-GAA- 2239
|| ||||||||||||||||| ||||||||||||| | ||| |||| | || || | |||
Sbjct 1978 TTTGATGCGAGTATGTTGGCAAAAGAGCTTCAGAGA-TTGGAAGATAATAATAGTAGAAA 2036
Query 2240 -G-AT--GGGAAATGGAGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2295
| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2037 CGGATATGGGAAATGGAGAGTGTTAAGTAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2096
Query 2296 AAGTCATTGTAAAGCGACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCTTCTTAA 2355
|||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2097 AAGTCAGTGTAAAGCTATGGAGCATGTGGCGCAACTTAGCAGAGGTGGGGAGCTTCTTAG 2156
Query 2356 CTTTGTTTGGTTGTTGATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAATAAAGG 2415
||||||||||||||||||||||||||| || ||| |||||||||| ||||| |||||||
Sbjct 2157 CTTTGTTTGGTTGTTGATGGCTCACTTTGGTTTATCAGATCAGTTTGAGATCGATAAAGG 2216
Query 2416 TGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2446
|| || |||||| |||||||| |||||||
Sbjct 2217 AGAACCTCGAGCTATACTCGTTGCAGGAGAG 2247
Score = 667 bits (361), Expect = 0.0
Identities = 444/485 (92%), Gaps = 2/485 (0%)
Strand=Plus/Plus
Query 56 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACAAATGGAACATCAGAGGACTT 115
|||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 1 ATGCAAGTGATTCCACCAAAAATAAAAAAGATCTTAGACATATGGAACATCAGAGGACTT 60
Query 116 GTGATAATGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGC 175
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GTGATATTGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCGCTGCGGAAACGT 120
Query 176 ACATCAAAGAAGTTGCTCGCCGCGGTTCTATGGACAGCATATCTTTTAGCGGATTGGACC 235
||||||||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 121 ACATCAAAGAAGTGGCTCGCTGTGGTTCTTTGGACCGCATATCTTTTAGCGGATTGGACC 180
Query 236 GCTAATTATGCGGTGTCTCAGATCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGA- 294
||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 181 GCTAATTATGCGGTGTCACAGATTACTAAGAATCAAGGGAAAGAGCCAGAACCTGGCGAG 240
Query 295 TCCTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 354
| |||||||||||||||| | |||||| | |||||||| ||||||||| ||||||||||
Sbjct 241 T-TTCCAAAAAACAAGAAGGTACTTGCTATGTGGGCACCGTTCTTGTTGCTGCATCTTGG 299
Query 355 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTT 414
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 300 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCATTATGGAAACGTCATTT 359
Query 415 GTTTGGCCTCGTCTCTCAAGCTCTTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAA 474
|||| |||||||||||||||| || ||| ||||||||||||||||||||||| | |||||
Sbjct 360 GTTTAGCCTCGTCTCTCAAGCGCTCGCATGTGTTTATGCGGTGGTGCAATCGATGGAAAA 419
Query 475 CGTATTATGGCCACCAATTACACTTTTATTCATCACAGGAACGATTAAGTACGTGGAGAG 534
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 420 CGTATTATGGCCACCAATCACACTGTTATTCATCACCGGAACGATTAAATACGTGGAGAG 479
Query 535 GACAC 539
| |||
Sbjct 480 GTCAC 484
> Ahg915804 jgi|Araly1|915804|Al_scaffold_0008_555
Length=1467
Score = 1310 bits (709), Expect = 0.0
Identities = 885/972 (91%), Gaps = 4/972 (0%)
Strand=Plus/Plus
Query 1474 ATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAGAATCCGATGATTCGTTGCACAGT 1533
|||||||||||||||||| ||||||||||||| || |||| |||| |||||| ||||||
Sbjct 492 ATCAATAAGAAGCGTGCTTAGGCAATGGTCTAAAAAAAATCTGATGTTTCGTTACACAGT 551
Query 1534 TTACCCGTTATATCTCGTGTTCTTCGCCGGTATTCCTGAAGTATTCAGAGTCCTTTGGAA 1593
|||||||||||| || || ||||| || |||||||||||| | |||||||||||||||||
Sbjct 552 TTACCCGTTATACCTTGTATTCTTTGCGGGTATTCCTGAATTTTTCAGAGTCCTTTGGAA 611
Query 1594 ATACATTGATCGAATCTTTAGTGTTACATCTTATCTAGACGGGATTAGGTTCATTTCGAG 1653
|||||||||||||||||||||||||| | |||||||||||| | |||||||| ||| |||
Sbjct 612 ATACATTGATCGAATCTTTAGTGTTAAAACTTATCTAGACGAGTTTAGGTTCGTTTTGAG 671
Query 1654 AGAGCCTTTGACGAAGAATCAATGGGAGTTTATATTCAATGAGGTCAAGGATAAGTCGGG 1713
||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||| |
Sbjct 672 AGAGCCTTTGACGAAGAATCAATGGGAATTTATATTCTATGAGTTGAAGGATAAGTCCCG 731
Query 1714 GTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTCTTGGGCGAGAGGAGAATGGGCTTT 1773
||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 732 TTTTGCGGAAACACCTAAAGTTGCAAAGAAACTGTCTTGGGCGAGAGGACAATGGGCTTT 791
Query 1774 ACGAGATTCGAAATTG-ATGGAAGTTGATACGTTGATGCGTTACATAGAGAAAGTTGATT 1832
||||||||||| |||| | |||| ||||||| |||||| |||| ||||||||||||||||
Sbjct 792 ACGAGATTCGATATTGGA-GGAAATTGATACATTGATGTGTTATATAGAGAAAGTTGATT 850
Query 1833 ATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGAGCTCTGTTTTCAAAAAGAAGAAG 1892
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 851 ATGATCAAAGTCTACTCCTTTGGCATATTGCTACTGAGCTCTGTTTTCAAGAAGAAGAAG 910
Query 1893 GTGGGAAGATGGAGAAGCTGAGCAGAGAAGGTTATGATGACCGAGAATTCAGCAAGATTA 1952
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 911 GTGGGGAGATGGAGAATTTGAGCAGAGAAAGTTATGATGACCGAGAATTCAGCAAGATTA 970
Query 1953 TATCGGACTACATGATGTATTTGTTGATAATGCGACCGAAGCTAATGTCGGAAGTGGCGG 2012
||||||| ||||||||||||||||||||||||||||| || | ||||| |||||| |||
Sbjct 971 TATCGGATTACATGATGTATTTGTTGATAATGCGACCAAAATTGATGTCAGAAGTGTCGG 1030
Query 2013 GAATCGGGACTATACGGTTTAGAGATACTAAAGCTGAAGCTGAGAGGTTTTTCAAAGGAA 2072
|||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1031 GAATGGGGACTATACGTTTTAGATACACTAAGGCTGAAGCTGAGAGGTTTTTCAAAGGAA 1090
Query 2073 GGCAAATCAAGGA-CTTGAGAGATATGAAACGAGCGAGTGAGACGGTTCTATTGGTTAGT 2131
||| |||||| | || |||||||||||||| ||||||| ||| |||| ||| ||||| |
Sbjct 1091 AGCATATCAAGAATCT-GAGAGATATGAAACTAGCGAGTAAGATGGTTTTATCGGTTAAT 1149
Query 2132 AACGATATTGAGCCGATACTTGTGAAGGGAGATCGAAGCAAGTCGGTTCTTTTCGATGCG 2191
|| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1150 AATGATATTGAGCCGATACTTGTGAAGGGAAATCAAAGCAAGTCGGTTCTTTTCGATGCG 1209
Query 2192 AGTATGTTGGCGAAAGAGCTTCAGAACTTGAAAGAGAGTAGTAATGAAGATGGGAAATGG 2251
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1210 AGTATGTTGGCAAAAGAGCTTCGGAATTTGAAAGAGAGTAGTAATGAAGATGGGAAATGG 1269
Query 2252 AGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCAGCAAGTCATTGTAAAGCG 2311
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1270 AGAGTATTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCTGCAAGTCATTGTAAAGCT 1329
Query 2312 ACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCTTCTTAACTTTGTTTGGTTGTTG 2371
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1330 ACGGAGCATGTGGCGCAACTTAGCAGAGGCGGTGAGCTTCTTAACTTCGTTTGGTTGTTG 1389
Query 2372 ATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAATAAAGGTGATGCTAGAGCTAAA 2431
|||| ||||||||| |||| |||| ||||| |||||||| |||| |||||||||||||||
Sbjct 1390 ATGGTTCACTTCGGTTTAGCAGATAAGTTTGAGATCAATGAAGGAGATGCTAGAGCTAAA 1449
Query 2432 CTCGTTGTAGGA 2443
||| ||||||||
Sbjct 1450 CTCCTTGTAGGA 1461
Score = 702 bits (380), Expect = 0.0
Identities = 455/492 (92%), Gaps = 2/492 (0%)
Strand=Plus/Plus
Query 56 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACAAATGGAACATCAGAGGACTT 115
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACATATGGAACATCAGAGGACTT 60
Query 116 GTGATAATGTCTCTGTTG-TTCCAAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACG 174
|||||| ||||||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct 61 GTGATACTGTCTCTGTTGCTT-CAAACGTCTCTTATCTTTCTTGCACCTATGCGGAAACG 119
Query 175 CACATCAAAGAAGTTGCTCGCCGCGGTTCTATGGACAGCATATCTTTTAGCGGATTGGAC 234
||| || |||||||||||||| ||||| ||||||| || ||||||||||||||||||||
Sbjct 120 CACGTCGAAGAAGTTGCTCGCATCGGTTATATGGACCGCTTATCTTTTAGCGGATTGGAC 179
Query 235 CGCTAATTATGCGGTGTCTCAGATCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGA 294
|||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 180 AGCTAATTATGTGGTATCTCAGATCACTAAGAACCAAGGGAAAGACTCAGAACCTGGCGA 239
Query 295 TCCTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 299
Query 355 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTT 414
||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TGGTCCGGACACCATAACCGCATTGGCTCTTGAGGATAATGCGTTATGGAAACGTCATTT 359
Query 415 GTTTGGCCTCGTCTCTCAAGCTCTTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAA 474
||||||||||||| |||||| |||||||||||||||| ||||||||||||| | |||||
Sbjct 360 ATTTGGCCTCGTCTTTCAAGCGCTTGCAGGTGTTTATGTGGTGGTGCAATCGTTGGAAAA 419
Query 475 CGTATTATGGCCACCAATTACACTTTTATTCATCACAGGAACGATTAAGTACGTGGAGAG 534
||| |||||||||||||| |||||||||||| |||| ||||||||||| || || |||||
Sbjct 420 CGTCTTATGGCCACCAATCACACTTTTATTCGTCACCGGAACGATTAAATATGTAGAGAG 479
Query 535 GACACGAGCATT 546
||||||||||||
Sbjct 480 GACACGAGCATT 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92406934370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5