BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45540.1
Length=2668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494429 jgi|Araly1|494429|fgenesh2_kg.8__245__AT5G45540.1 3886 0.0
Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1 198 2e-49
Ahg946268 jgi|Araly1|946268|scaffold_702497.1 174 3e-42
> Ahg494429 jgi|Araly1|494429|fgenesh2_kg.8__245__AT5G45540.1
Length=2618
Score = 3886 bits (2104), Expect = 0.0
Identities = 2487/2662 (93%), Gaps = 66/2662 (2%)
Strand=Plus/Plus
Query 17 AAACTTTATGTGAAAGAAACGTTCACTAACCTTTGACACTACTGTGAACATCCACAG--T 74
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1 AAACTGTATGTGAAAGAAACGTTCACTAACCTTTGACACTTCTGTGAACATCCACAGTTT 60
Query 75 -AAACCAAGTGCAGTTTTGCGGTCCAACGAAGAAGAAGACAAGATGACTGACATGATTCC 133
|||| |||| |||| | | |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GAAACAAAGTACAGTCTCGTGGTCTAACGAAGAAGAAGACAAGATGACTGACATGATTCC 120
Query 134 ACCACATCTGAGGAAACTTTGGGACAAATGGAACATACGTGGAGTCATAATACTCAGTCT 193
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ACCACATTTGAGGAAACTTTGGGACAAATGGAACATTCGTGGAGTCATAATACTCAGTCT 180
Query 194 TTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCCGAAGACGCACCGCAAAGAAGCT 253
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCAGAAGACGCACCGCAAAGAAGCT 240
Query 254 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 300
Query 314 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGAATCAAACAAACCA-TCCAAGAACC 372
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 301 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGCATCAAACAAA-CAGTCCAAGAACC 359
Query 373 GTGAGCTGCTAGCATTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGATACCA 432
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GTGAGCTGCTAGCTTTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGACACCA 419
Query 433 TTACAGCACTTGCCTTGGAGGATAATGAGCTTTGGGACAGACACT-TGTTTAGTCTTGTC 491
|||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 420 TTACAGCACTTGCCCTGGAGGATAATGAGCTTTGGGACAGACA-TCTGTTTAGTCTTGTC 478
Query 492 TGTCAAGCGGTAGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 551
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTCAAGCAGTCGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 538
Query 552 CCAACATTAATCATGTTTGTGGGAGGAGTGATCAAGTATGTCGAGAGAACAGCTGCGTTG 611
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 539 CCAACATTAATCATGTTTGTGGGCGGAGTGATCAAGTATGTCGAGAGAACAGCTGCATTG 598
Query 612 TTCTCAGCGAGTCTTGACAAGTTCAAGGACTCTATGCTCGACGATCCTGACCCTGGTGCT 671
|||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 599 TTCTCAGCGAGTCTTGGCAAGTTCAAGGATTCTATGCTCCACGATCCTGATCCTGGTGCT 658
Query 672 AATTACGCGAAA-CTCATGGAGGAATATGAAGCTAGGAAGAAGATGAATATGCCAACTGA 730
|||||||| ||| |||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 659 AATTACGC-AAAGCTCATGAAGGAATATGAAGCTAAGAAGAATATGAATATGCCAAC--- 714
Query 731 TGTAATAGTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCCAG-TTAGGCCCG 789
|| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 715 TG--AT-GTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCC-GATTAGGCCCG 770
Query 790 ACAATGA-ATTGACCGCACTACAAGTTATTCAGTATGCTTACAAATACTTTAACATCTTC 848
||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 771 ACAAT-ACCTTGACCGCACTTCAAGTTATTCAGTATGCTTACAAGTACTTTAACATCTTC 829
Query 849 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAAGAGCGCGACGAGAGCAGGAAATTC 908
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 830 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAACAGCGCGATGAGAGCAGGAAATTC 889
Query 909 TTTGACAAGCTGACTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGACTCATC 968
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 890 TTTGACAAGCTGAGTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGCCTCATC 949
Query 969 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1009
Query 1029 TTTATAGCTTTGGGGTGCCTTGTTGCATCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1088
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1010 TTTATAGCTTTGGGGTGCCTTGTTGCGTCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1069
Query 1089 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1129
Query 1149 GATTCCATTGCTCTTCTCATGTTCTGTGTATCTGACTGGACCATCGCTAGACTGAGGAAA 1208
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 GATTCCATTGCTCTTCTCATGTTCTGTGTTTCTGACTGGACCATCGCTAGACTGAGGAAA 1189
Query 1209 CTAAAGGAGGACCTGGAAGAGAAAGACACCTTGA-CAGACAGAGTTCTCAACTGGATCCT 1267
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1190 CTAAAGGAAGACCTGGAAGAGAAAGACACCA-GAACAGACAGAGTTCTCAACTGGATCCT 1248
Query 1268 CGATTTCAAGACGCTGAGGTGGAAAAGATCCAAATGTTCCCAGGATGGACATCAAGTGCT 1327
|||||||||||||||||| || | | | || ||||| ||||| |||||||
Sbjct 1249 CGATTTCAAGACGCTGAGATG-------T-----T-T-CC-AGGATAGACATGAAGTGCT 1293
Query 1328 CAACAGAAACTTTATGTTTCGCAGATGGTCTGAGTATGTTCATGCTTACAACTTGATTGG 1387
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1294 CAACAGAAACTTTATGTTTCGCAGGTGGTCTGAGTATGTTCATGCTTACAACATGATTGG 1353
Query 1388 CTTCTGTTTGGGAATACGTCCCAAGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1447
||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1354 ATTCTGCTTGGGGATACGTCCCACGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1413
Query 1448 CTTTCACCAGACCGTTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1507
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTTTCACCAGATCATTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1473
Query 1508 AACTCGCCAGTTTCATAACTGGATTGGTCGCTTTCTCAGCAATTTGTCCAAAAGAGACAA 1567
| ||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1474 AGCTCGCCAGTTTCAGAATTGGATTGGTCGCTCTCTCAGTAATTTGTCCAAAAGAGACAA 1533
Query 1568 TTCGGTAATCCGTACAGGTCTTAGATGGTTTCTCTTTTTCCCTCAACTCCTCGGACTTTT 1627
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1534 TTCGGTAATCCGTACCGGTCTTAGATGGTTTCTCTTTTTTCCTCACCTCCTCGGACTTTT 1593
Query 1628 GATCTACAACTTCCTCGACTTTTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1687
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1594 GATCTACAAGTTCCTAGACTTCTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1653
Query 1688 GGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 AGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1713
Query 1748 ACACCGATTTGCTGAAGACCAAGAAAGTGCAAAGGGTATATCTTCAGCTAGAGGAAACTG 1807
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1714 ACACCAATTTGCTGAAGACCAAGAAAGTGCAAAGGATATATCTTCAGCTAGAGGAAACTG 1773
Query 1808 GACTCTACTTGAAACATCAAGCAAAAAGAA-AGAAGACGGAACAGACCATACGAAACTTC 1866
|||||||||| |||||||||||||||| || |||| ||||| |||||||| |||||||||
Sbjct 1774 GACTCTACTTCAAACATCAAGCAAAAA-AAGAGAATACGGATCAGACCATGCGAAACTTC 1832
Query 1867 TGCAGTACGTGACGGAGAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1926
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 TGCAGTATGTGACAGAAAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1892
Query 1927 AACTCTTATACCAAAAGCCAATAGACAAAAAAGT--CA-CAGAGAAAGAAGAACACAGTA 1983
||||||||||||||||| |||||||| || |||| || |||||||| |||||||| |||
Sbjct 1893 AACTCTTATACCAAAAGTCAATAGACCAAGAAGTGACAACAGAGAAACAAGAACACCGTA 1952
Query 1984 CTAACCGAGAGAAAGAAGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2043
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 --AGC-GAGAGAAAGATGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2009
Query 2044 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCCGGAATCGCAAAGA 2103
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2010 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCTGGAATCATAAAGA 2069
Query 2104 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCAGAGGAGACATGTCGACA 2163
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 2070 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCGGAGGAGGCATATCGACA 2129
Query 2164 AATCAAGATATGTaaaaaaa-aaCCTCATGAAAGAAGCATGTCGAGCTATTCTCTCTGTC 2222
||||||| |||| ||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 2130 AATCAAGGTATG-AAAAAAACAACCTTGTGAAAGAAGCCTGTCGAGCTATTCTCTCTGTC 2188
Query 2223 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCT-TTTCGA 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2189 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCTGTTT-GA 2247
Query 2282 TGCAAGCGTGCTCGCAAAAGAGCTA-ATGAATGAAGGTGAAAACATGTGGGAAGTAGTGA 2340
|||||||||||| ||||| |||||| | ||| ||||| | ||||||||||||||||||||
Sbjct 2248 TGCAAGCGTGCTTGCAAAGGAGCTAGA-GAAAGAAGGCGGAAACATGTGGGAAGTAGTGA 2306
Query 2341 GCAAAGTGTGGGTTGAGTTGCTTTGCTATGCATCACTTCATTGTGACTCTCAAGAACATG 2400
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 2307 GCAAAGTGTGGGTTGAGTTACTTTGCTATGCATCACTTCATTGTAACTCTCAAGAACATG 2366
Query 2401 CTTCTCAACTTAGCAAAGGCGGTGAACTTATCAACTTTGTTTGGCTATTAATGGCTCATT 2460
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2367 CTTCTCAACTCAGCAAAGGCGGTGAACTCATCAACTTTGTTTGGCTATTAATGGCTCATT 2426
Query 2461 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTTATAGTCG 2520
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2427 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTCATTGTCG 2486
Query 2521 CCAACTGATTTATCAACACAAAC-CTGCA-CTT-ATGT--TTTACTTCCTTGAATAAATC 2575
|||| |||| || ||||||| | | ||| || | ||||||||||||||||| ||
Sbjct 2487 CCAATTGAT----CA-CACAAACTCGGTTTCTTCATCTACTTTACTTCCTTGAATAA-TC 2540
Query 2576 TGCACTAATAGTGTAGTAA-CTTTAGTCATCATCTATGCTTATGAACATGAAAATCATAT 2634
|||||| ||||||||||| ||| | | |||||||||||||||||||||||||| |
Sbjct 2541 TGCACTTGTAGTGTAGTAAACTTCC-T-AG--TCTATGCTTATGAACATGAAAATCATCT 2596
Query 2635 CCTTTGTTATCAATTTCATTCA 2656
||||||||||||||||||||||
Sbjct 2597 CCTTTGTTATCAATTTCATTCA 2618
> Ahg494436 jgi|Araly1|494436|fgenesh2_kg.8__252__AT5G45480.1
Length=2776
Score = 198 bits (107), Expect = 2e-49
Identities = 417/555 (75%), Gaps = 67/555 (12%)
Strand=Plus/Plus
Query 2001 GAA-CACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACATGATGTACCTCCTTAT 2059
||| || || ||||| |||| ||| ||||| || || |||||||||||||||||||| ||
Sbjct 2230 GAATCATAGCAACCGTGAGTACAGTAAAATTCTCTCAGACTACATGATGTACCTCCTAAT 2289
Query 2060 AG-TGCAGCCAACTCTGATGTCAGCTGTT-TCCGGAATCGCAAAGATACGTTTCAGAGAC 2117
| |||| || |||||||||||||||||| | || || | ||||||| | |||||||||
Sbjct 2290 -GATGCAACCCACTCTGATGTCAGCTGTTGT-GGGTATTGGAAAGATAAGATTCAGAGAC 2347
Query 2118 ACATGCGAAGAGG--CAAAGGACTTTTTCCAGAGGAGACATGTCGACAAATCAAGATAT- 2174
|||||||| |||| || ||| || ||| | ||||| ||| | | || |||||
Sbjct 2348 ACATGCGAGGAGGCTCAGAGG--TTCTTCGATAGGAGGCATAT---C--ATGGGGATATC 2400
Query 2175 -GTaaaaaaaaaCCTCATGAAAGAAG-CATGTCGA-GCTATTCTCTCTGT--C---AACA 2226
| ||| || || | | || |||| || | ||| || ||| | ||||| | ||
Sbjct 2401 CG-CAAAGAAGGCC-CCT-AAGGAAGCCA-G-CGACGCAATTTTATCTGTGGCTGTTCCA 2455
Query 2227 -CAGAAATC-GA-TCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCT-TTTCGAT 2282
|| ||| | || ||| || | ||||||||||| |||||||||||||| || ||| |||
Sbjct 2456 GCA-AAAGCTGAGCCCATTGAC-GTGAAAGGAGATAGAAGCAAATCCGTCCTGTTT-GAT 2512
Query 2283 GCAAG-CGTGCTCGCAAAAGAGC-TAA-----T--G--A-ATGAAGGTG-A-AA-AC--- 2324
| | | |||| || ||||||| ||| | | | | |||| | | || ||
Sbjct 2513 G-GGGCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGCAAGAACAAGGAGAACAACACAGA 2571
Query 2325 -ATGTGGGAAGTAGTGAGCAAAGTGTGGGTTGAGTTGCTTTGCT-ATGCATC-ACTTCAT 2381
||||||||| |||||||||||||||||||||||||||||| || ||||| | || |
Sbjct 2572 GATGTGGGAAATAGTGAGCAAAGTGTGGGTTGAGTTGCTTT-CTTATGCAGCGACAA-AG 2629
Query 2382 TGTGACTCTCA-AGAACATGCTTCTCAACTTAGCAAAGGCGGTGAACTTATCAA-CTTTG 2439
|||| | || | |||||| || |||| || |||||||| || ||||| || || |||||
Sbjct 2630 TGTGGCGCT-ATAGAACACGCAGCTCAGCTAAGCAAAGGAGGAGAACTCAT-AAGCTTTG 2687
Query 2440 TTTGGCTATTAATGGCTCATTTTGGACTCGGAGATCAATTCCAAATCAAC-AGAG-ATGA 2497
|||||||||| ||||||||||||||||| ||||| ||||||||||||||| | || | ||
Sbjct 2688 TTTGGCTATTGATGGCTCATTTTGGACTAGGAGACCAATTCCAAATCAACCA-AGGA-GA 2745
Query 2498 TGCAAGAGCCAAACT 2512
||| |||||||||||
Sbjct 2746 TGCCAGAGCCAAACT 2760
> Ahg946268 jgi|Araly1|946268|scaffold_702497.1
Length=3021
Score = 174 bits (94), Expect = 3e-42
Identities = 162/194 (84%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 2323 ACATGTGGGAAGTAGTGAGCAAAGTGTGGGTTGAGTTGCTTTGCTATGCATCA-CTTCAT 2381
||||||||||||||||||||||||||||||| ||| |||||||||||||| || || ||
Sbjct 2218 ACATGTGGGAAGTAGTGAGCAAAGTGTGGGTGGAGATGCTTTGCTATGCAGCAACT-CAC 2276
Query 2382 TGTGACTCTCAAGAACATGCTTCTCAACTTAGCAAAGGCGGTGAACTT-ATCAACTTTGT 2440
||||| ||| || ||||||| |||| || | |||||| |||||| || |||||||||||
Sbjct 2277 TGTGATTCTAAACAACATGCAGCTCAGCTCAACAAAGGTGGTGAA-TTGATCAACTTTGT 2335
Query 2441 TTGGCTAT-TAATGGCTCATTTTGGACTCGGAGATCAATTCCAAATCAACAGAG-ATGAT 2498
|||||| | | ||||||||||| ||||||||||| ||||||| | || || || | |||
Sbjct 2336 TTGGCT-TCTGATGGCTCATTTCGGACTCGGAGAGCAATTCCTGACCACCA-AGGAAGAT 2393
Query 2499 GCAAGAGCCAAACT 2512
| ||||||| |||
Sbjct 2394 TCTAGAGCCAGACT 2407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100634427290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5