BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45550.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356451 jgi|Araly1|356451|fgenesh1_pg.C_scaffold_8000238 1081 0.0
Ahg492950 jgi|Araly1|492950|fgenesh2_kg.7__2383__AT4G19050.1 737 0.0
> Ahg356451 jgi|Araly1|356451|fgenesh1_pg.C_scaffold_8000238
Length=648
Score = 1081 bits (585), Expect = 0.0
Identities = 628/649 (97%), Gaps = 2/649 (0%)
Strand=Plus/Plus
Query 123 ATGAGTCTCTTTGGG-TTAGGAAGAAATCAGAAGACTTTCCGACCTAAGAAGAGTGCACC 181
||||||||||||||| || || |||||||| ||||||||||| ||||| |||||||||||
Sbjct 1 ATGAGTCTCTTTGGGCTT-GGGAGAAATCAAAAGACTTTCCGTCCTAAAAAGAGTGCACC 59
Query 182 TTCTGGAAGCAAGGGTGCACAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTGGAAGCAAGGGTGCTCAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA 119
Query 242 CTTGAGAGAAGCTGTAAGACTTCCTCCGGGAGAGGATGCAAATGAATGGCTTGCTGTAAA 301
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CTTGAGAGAAGCTGTGAGACTTCCTCCAGGAGAGGATGCAAATGAATGGCTTGCTGTAAA 179
Query 302 CACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCAC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCAC 239
Query 362 ACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAGTACGAGTATAGATGGGCAGATGG 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 ACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAGTACGAGTACAGATGGGCAGATGG 299
Query 422 TGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGA 481
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 300 TGTACAGATCAAGAAGCCCATCGAGGTATCTGCTCCAAAGTATGTTGAGTACTTGATGGA 359
Query 482 TTGGATCGAGACCCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCATT 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGGATCGAGACTCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCATT 419
Query 542 TCCTCAGAACTTCAAAGATGTGGTGAAAACGATCTTTAAACGGCTATTCCGAGTTTATGC 601
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TCCTCAGAACTTCAAGGATGTGGTGAAAACGATCTTCAAACGGCTATTCCGAGTTTATGC 479
Query 602 TCACATATACCACTCTCATTTCCAGAAAATCGTTAGCCTAAAAGAAGAAGCTCATCTCAA 661
||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TCATATATATCATTCTCATTTCCAGAAAATCGTTAGCCTCAAAGAAGAAGCTCATCTCAA 539
Query 662 CACTTGCTTCAAACACTTCATCCTCTTTACTCATGAATTTGGACTGATAGACAAGAAAGA 721
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CACTTGCTTCAAACATTTCATCCTCTTTACTCATGAGTTTGGACTGATAGACAAGAAAGA 599
Query 722 ACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTATTGA 770
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTATTGA 648
> Ahg492950 jgi|Araly1|492950|fgenesh2_kg.7__2383__AT4G19050.1
Length=4260
Score = 737 bits (399), Expect = 0.0
Identities = 551/625 (88%), Gaps = 8/625 (1%)
Strand=Plus/Plus
Query 146 AAATCAGAAGACTTTCCGACCTAAGAAGAGTGCACCTTCTGGAAGCAAGGGTGCACAGCT 205
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 3636 AAATCAAAAGACTTTCCGTCCTAAAAAGAGTGCACCTTCTGGAAGCAAGGGTGCTCAGCT 3695
Query 206 TCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA-CTTGAGAGAAGCTGTAAGACTTC 264
||||||||||||||||||||| |||| |||||||| ||| |||||||| |||| |||||
Sbjct 3696 TCGAAAGCATATAGATGCCACTTTAGGTAGTGGGAATCTT-AGAGAAGCCGTAAAACTTC 3754
Query 265 CTCCGGGAGAGGATGCAAATGAATGGCTTGCTGTAAACACTGTGGATTTCTTTAATCAGG 324
|||||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||
Sbjct 3755 CTCCGGGAGAGGATTTAAACGAATGGCTTGCCGTTAACACCGTGGATTTCTTTAATCAGG 3814
Query 325 TGAATTTGCTATATGGCACCCTTACCGAGTTCTGCACACCTGATAACTGTCCTACAATGA 384
||||| || ||| ||| || ||||||||||| || || || || |||||| |||||||||
Sbjct 3815 TGAATCTGTTATTTGGTACACTTACCGAGTTTTGTACCCCGGAGAACTGTTCTACAATGA 3874
Query 385 CTGCTGG-CCCAAAGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATC 443
||||||| ||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 3875 CTGCTGGTCCC-AAGTACGAATACAGATGGGCAGATGGTGTACAGATCAAGAAGCCTATC 3933
Query 444 GAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGATTGGATCGAGACCCAACTCGAT 503
|||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 3934 GAGGTTTCAGCTCCAAAGTATGTTGAGTACTTAATGGATTGGATCGAGACACAACTCGAT 3993
Query 504 GATGAGACTTTATTTCCTCAAAGGCTTGG-AGCACCATTTCCT-CAGAACTTCAAAGATG 561
|||||||| |||||||||||| ||||| | | | |||||| || |||||||| || |
Sbjct 3994 GATGAGACCATATTTCCTCAAAAACTTGGTA-AAACTTTTCCTCCA-AACTTCAAGGAAG 4051
Query 562 TGGTGAAAACGATCTTTAAACGGCTATTCCGAGTTTATGCTCACATATACCACTCTCATT 621
||||||| || ||||||||| | | ||||||||||| || ||||| ||||| || ||||
Sbjct 4052 TGGTGAAGACAATCTTTAAAAGATTGTTCCGAGTTTACGCACACATTTACCATTCCCATT 4111
Query 622 TCCAGAAAATCGTTAGCCTAAAAGAAGAAGCTCATCTCAACACTTGCTTCAAACACTTCA 681
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 4112 TCCAGAAAATCGTTAGTCTCAAAGAGGAAGCTCATCTCAACACTTGCTTCAAACACTTCA 4171
Query 682 TCCTCTTTACTCATGAATTTGGACTGATAGACAAGAAAGAACTCGCGCCTCTACAAGAGC 741
||||||| |||||||| |||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 4172 TCCTCTTCACTCATGAGTTTGTTCTCATTGACAAGAAAGAACTCGCTCCTCTTCAAGAAC 4231
Query 742 TCATAGAATCTATCATTTCACCTTA 766
||||||||||||||||| |||||||
Sbjct 4232 TCATAGAATCTATCATTGCACCTTA 4256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5