BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45580.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356449 jgi|Araly1|356449|fgenesh1_pg.C_scaffold_8000236 1280 0.0
> Ahg356449 jgi|Araly1|356449|fgenesh1_pg.C_scaffold_8000236
Length=843
Score = 1280 bits (693), Expect = 0.0
Identities = 792/840 (94%), Gaps = 6/840 (1%)
Strand=Plus/Plus
Query 4 AGAGTGAATCTCGGAGGTTTAGGTTACGATAATGGCGGAGTTATGATGACTAGAGATCCC 63
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 7 AGAGTGAATCTGGGAGGTTTAGGTTACGATAACGGCGGAGTTATGATGACTAGAGATCCT 66
Query 64 AAACCTAGGCTCAGATGGACAGCCGATCTTCATGATCGCTTCGTCGACGCCGTCGCTAAG 123
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 67 AAACCCAGGCTCAGATGGACCGCCGATCTTCACGATCGCTTCGTCGACGCCGTCGCTAAG 126
Query 124 CTCGGTGGCGCTGACAAAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGT 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCGGTGGTGCTGACAAAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGT 186
Query 184 TTAACACTGTACCATCTCAAGAGCCATTTACAGAAGTATAGACTTGGTcaacaacaaggc 243
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TTAACATTGTACCATCTCAAGAGCCATTTACAGAAGTATAGACTTGGTCAACAACAAGGG 246
Query 244 aaaaaacaaaatagaacagaacaaaacaaagaaaaTGCTGGAAGTTCATATGTGCATTTC 303
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 247 AAGAAACAAAATAGAACCGAACAAAACAAGGAAAATGCTGGAAGTTCATATGTGCATTTC 306
Query 304 GACAATTGTTCTCAAGGAGGAATCTCCAATGATTCAAGATTTGATAAC--C-ATCAAAGA 360
|| ||||||||||||||||||||||| ||||| ||||||||||||| | | ||||||||
Sbjct 307 GATAATTGTTCTCAAGGAGGAATCTCGAATGAATCAAGATTTGATAGCGGCAATCAAAGA 366
Query 361 CAAAGCGGGAATGTACCTTTTGCTGAGGCAATGAGACATCAGGTCGATGCGCAACAACGG 420
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 367 CAAAGCGGGAATGTACCATTTGCAGAGGCAATGAGACATCAGGTCGATGCGCAACAACGG 426
Query 421 TTTCAAGAACAACTCGAGGTGCAGAAAAAACTGCAGATGAGAATGGAGGCACAAGGAAAA 480
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 427 TTTCAAGAACAGCTCGAGGTGCAGAAAAAACTCCAGATGAGAATGGAGGCACAAGGAAAG 486
Query 481 TATTTGTTGACATTACTAGAGAAAGCACAGAAGAGCTTACCTTGTGGTAATGCAGGGGAA 540
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 487 TATTTGTTGACATTACTAGAGAAAGCACAGAAGAGCATACCTTGTGGTAATGTAGGAGAA 546
Query 541 ACAGACAAGGGTCAATTCTCGGATTTCAATCTCGCACTTTCGGGACTTGTAGGAAGTGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ACAGACAAGGGTCAATTCTCGGATTTCAATCTCGCACTTTCGGGACTTGTAGGAAGTGAT 606
Query 601 CGTAAGAACGAGAAGGCGGGTTTGGTTACTGATATCTCACACCTTAATGGTGGTGATTCC 660
| ||||||||| |||| |||||||||| | |||| ||||||||||||| || ||||
Sbjct 607 CATAAGAACGAAAAGGTGGGTTTGGTTGCCAATATTTCACACCTTAATGCTG---ATTCT 663
Query 661 TCTCAAGAGTTTCGGTTATGTGGAGAACAAGAGAAAATAGAAACCGGAGATGCATGTGTT 720
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCTGAAGATTTTCGGTTATGTGGAGAACAAGAGAAAATAGAAACCGGAGATGCATGTGTT 723
Query 721 AAACCAGAATCCGGGTTTGTGCATTTTGATTTGAACTCCAAAAGTGGGTATGATCTCTTG 780
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 724 AAACCGGAATCCGGATTTGTGCATTTCGATTTGAACTCCAAAAGTGGGTATGATCTCTTG 783
Query 781 AATTGTGGGAAATATGGGATTGAAGTGAAGCCAAATGTGATTGGAGATAGACTTCAATAG 840
||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 784 AATTGTGGGAAATTTGGGATTGAAGTGAAGCCAAATGTGATTACAGATAGACATCAATAG 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5