BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45590.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494426 jgi|Araly1|494426|fgenesh2_kg.8__242__AT5G45590.1 1055 0.0
> Ahg494426 jgi|Araly1|494426|fgenesh2_kg.8__242__AT5G45590.1
Length=751
Score = 1055 bits (571), Expect = 0.0
Identities = 684/735 (93%), Gaps = 21/735 (3%)
Strand=Plus/Plus
Query 23 CAATCAGAAAATTGTTCTTCCCCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 82
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATCAGAAAATTGTTCTTCCTCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 60
Query 83 GTTCCATTTCTCTCCAATCTAATCGGAATCTCTCTTTTTACGGTGCTTCTCCTCACCGTC 142
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 GTTCCATTTCCCTCCAATCTAATCGGAATCTCTCTTTTTCCGGTGCTGCTCCTCACCGTC 120
Query 143 TCATTCACCATTCTCCTTCTCCGAGTCGTCACTTAACAACAACAACCCTAGGTTTTGCCA 202
|||||||||| |||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 121 TCATTCACCA------TTCTCCGACTCGTCACTT---AACAACAACCCTAGGTTTCGCCA 171
Query 203 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTTTCCGTCGAATGTTAGCTCCA 262
||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||
Sbjct 172 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTCTCCTTTGAATATTAGCTCCA 231
Query 263 TGGGCACTACCTTTGTTCCTCATCACTTTGTTCAAGTACGAAATATCACTTCTAAGGAAA 322
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 232 TGGGCTCTACCTTTGTTCCTCATCACTTTGTTCAAGTACGGAATATCACTTCCAAGGAAA 291
Query 323 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 351
Query 383 AAGTCAAGATTAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 442
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAGTCAAGATCAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 411
Query 443 CCATCCGTCGCTGGAAAGAAGGCAAGCGCCACAACGCACATTTGAAGTCAAAGAAATCGA 502
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 412 CCATCCGTCGCTGGAAAGAGGGCAAGCGCCACAACGCACACTTGAAGTCAAAGAAATCAA 471
Query 503 AGCGTAGATTGAGACAACCTGGACTAGTACCACCAGCATATGCGAAAGTCATGAAGAAAC 562
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 472 AGCGTAGATTGAGACAGCCTGGACTAGTACCACCAGCATATGCCAAAGTTATGAAGAAAC 531
Query 563 TCAATTTCTGCAATTGAGAGATAGAGCATGAAACAGTATGATTACGATGAAAGCCAGTCT 622
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||
Sbjct 532 TCAATTTCTGCAATTGAGAGATAGAGAAAGAAACAATATGATTACGATGAAAGCCAATCT 591
Query 623 CTTCCAGTTTTTACC-AGATAATTTTGCTCACTGGTACTCAAAAAATCTTTATGTTTCAG 681
|||||||||||| || |||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 592 CTTCCAGTTTTTTCCCAGATAATTTTGCTCACTGGTACCCAAAAA-TCTTCATGTTTCAG 650
Query 682 TTTAAC-TTCATTGGAATAAATTG--A-----GTTTTCGAAATATGGTGAAATTGGCGTT 733
|| ||| || |||||||||||||| | ||||| ||||| ||||||||||||| ||
Sbjct 651 TT-AACCTT-ATTGGAATAAATTGGCATTTTAGTTTTTGAAATCTGGTGAAATTGGCATT 708
Query 734 AAGACTGATCGGTTT 748
|||||||||||||||
Sbjct 709 AAGACTGATCGGTTT 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5