BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45600.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494425 jgi|Araly1|494425|fgenesh2_kg.8__241__AT5G45600.1 1580 0.0
Ahg887573 jgi|Araly1|887573|Al_scaffold_0801_2 874 0.0
> Ahg494425 jgi|Araly1|494425|fgenesh2_kg.8__241__AT5G45600.1
Length=1031
Score = 1580 bits (855), Expect = 0.0
Identities = 978/1035 (94%), Gaps = 17/1035 (2%)
Strand=Plus/Plus
Query 96 GAAGAAGAAGAAGATGACCTTAATTTTTTCTGAATGAAATCTTAAAATT-CCCAGAAAGA 154
||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||| |||
Sbjct 1 GAAGAAGAAGAAGATGACCTTAATTTTATCTGAGTGAAATCTT-AAATTACCCAGAGAGA 59
Query 155 AGAATGACGAACAGCTCGTCATCGAAGAAACAAGCTCAAGATCAGCCAGAAACTAGCGAA 214
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 AGAATGACGAACAGTTCGTCATCGAAGAAACAAGCTCAAGATCAGCCTGAAACTAGCGAA 119
Query 215 CCCACTCTCAAATCTCTCAAAACCAAGATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 274
|| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 120 CCAACTCTCAAATCACTCAAAGCCAAAATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 179
Query 275 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 239
Query 335 AAGGCTAGTGAGTATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 394
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGGCTAGTGAGTATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 299
Query 395 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCG 454
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 300 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCG 359
Query 455 ACTAGAGTTATCGAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 514
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 ACGAGAGTTATCGAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 419
Query 515 ATTGCAATGACATTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCAT 574
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 420 ATTGCGATGACATTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCAT 479
Query 575 CATTTAAAGCTATACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 634
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATTTAAAGTTATACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 539
Query 635 GTGGAATCTTATGACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTT 694
||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 540 GTGGAATCTTACGACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTT 599
Query 695 CAGAATCATCCGGCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 754
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAGAATCATCCGGCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 659
Query 755 ATGCAAGTCGAAGATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGA 814
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 660 ATGCAAGTGGAGGATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGA 719
Query 815 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAA 874
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 720 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTCGCGGCTGCTCGTCAA 779
Query 875 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 839
Query 935 CAGACCGTTAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATCATCTTCCATTG 994
|||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 840 CAGACCGTGAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATC-T-T-CCATTG 896
Query 995 AGC-GGGAGATTGGCATGTTGTAAC-T----GT--ATTAGCATAGATTTCCATTTTTCTT 1046
|| |||||||||| |||||||||| | || |||||||||||||||||||| ||||
Sbjct 897 AGTTGGGAGATTGGTATGTTGTAACATTACTGTGTATTAGCATAGATTTCCATTTATCTT 956
Query 1047 GTATTAATAAACA-CAA-ATAAAGATTAGTGTCAAGTTCTTATCATAGGCTCTCTC-C-T 1102
||||||||||||| ||| | |||||||||| | || ||||||| |||||||||||| | |
Sbjct 957 GTATTAATAAACAACAACAAAAAGATTAGTTTTAATTTCTTATTATAGGCTCTCTCTCCT 1016
Query 1103 CTGTTCCAGTTTCAT 1117
||||||| |||||||
Sbjct 1017 CTGTTCCCGTTTCAT 1031
> Ahg887573 jgi|Araly1|887573|Al_scaffold_0801_2
Length=540
Score = 874 bits (473), Expect = 0.0
Identities = 513/533 (96%), Gaps = 0/533 (0%)
Strand=Plus/Plus
Query 347 TATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT 406
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT 60
Query 407 GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCGACTAGAGTTATC 466
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 61 GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCGACGAGAGTTATC 120
Query 467 GAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCAATGACA 526
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCGATGACA 180
Query 527 TTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCATCATTTAAAGCTA 586
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 181 TTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCATCATTTAAAGTTA 240
Query 587 TACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAT 646
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAC 300
Query 647 GACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTTCAGAATCATCCG 706
||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 301 GACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTTCAGAATCATCCG 360
Query 707 GCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTCGAA 766
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTGGAG 420
Query 767 GATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGACAATGGTTCATG 826
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGACAATGGTTCATG 480
Query 827 AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAACAGGT 879
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCGGCTGCTCGTCAACAGGT 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5