BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45600.1 Length=1167 Score E Sequences producing significant alignments: (Bits) Value Ahg494425 jgi|Araly1|494425|fgenesh2_kg.8__241__AT5G45600.1 1580 0.0 Ahg887573 jgi|Araly1|887573|Al_scaffold_0801_2 874 0.0 > Ahg494425 jgi|Araly1|494425|fgenesh2_kg.8__241__AT5G45600.1 Length=1031 Score = 1580 bits (855), Expect = 0.0 Identities = 978/1035 (94%), Gaps = 17/1035 (2%) Strand=Plus/Plus Query 96 GAAGAAGAAGAAGATGACCTTAATTTTTTCTGAATGAAATCTTAAAATT-CCCAGAAAGA 154 ||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||| ||| Sbjct 1 GAAGAAGAAGAAGATGACCTTAATTTTATCTGAGTGAAATCTT-AAATTACCCAGAGAGA 59 Query 155 AGAATGACGAACAGCTCGTCATCGAAGAAACAAGCTCAAGATCAGCCAGAAACTAGCGAA 214 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 60 AGAATGACGAACAGTTCGTCATCGAAGAAACAAGCTCAAGATCAGCCTGAAACTAGCGAA 119 Query 215 CCCACTCTCAAATCTCTCAAAACCAAGATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 274 || ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 120 CCAACTCTCAAATCACTCAAAGCCAAAATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 179 Query 275 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 239 Query 335 AAGGCTAGTGAGTATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 394 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 240 AAGGCTAGTGAGTATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 299 Query 395 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCG 454 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 300 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCG 359 Query 455 ACTAGAGTTATCGAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 514 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 ACGAGAGTTATCGAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 419 Query 515 ATTGCAATGACATTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCAT 574 ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 420 ATTGCGATGACATTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCAT 479 Query 575 CATTTAAAGCTATACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 634 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CATTTAAAGTTATACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 539 Query 635 GTGGAATCTTATGACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTT 694 ||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 540 GTGGAATCTTACGACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTT 599 Query 695 CAGAATCATCCGGCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 754 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 600 CAGAATCATCCGGCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 659 Query 755 ATGCAAGTCGAAGATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGA 814 |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 660 ATGCAAGTGGAGGATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGA 719 Query 815 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAA 874 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 720 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTCGCGGCTGCTCGTCAA 779 Query 875 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 839 Query 935 CAGACCGTTAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATCATCTTCCATTG 994 |||||||| |||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 840 CAGACCGTGAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATC-T-T-CCATTG 896 Query 995 AGC-GGGAGATTGGCATGTTGTAAC-T----GT--ATTAGCATAGATTTCCATTTTTCTT 1046 || |||||||||| |||||||||| | || |||||||||||||||||||| |||| Sbjct 897 AGTTGGGAGATTGGTATGTTGTAACATTACTGTGTATTAGCATAGATTTCCATTTATCTT 956 Query 1047 GTATTAATAAACA-CAA-ATAAAGATTAGTGTCAAGTTCTTATCATAGGCTCTCTC-C-T 1102 ||||||||||||| ||| | |||||||||| | || ||||||| |||||||||||| | | Sbjct 957 GTATTAATAAACAACAACAAAAAGATTAGTTTTAATTTCTTATTATAGGCTCTCTCTCCT 1016 Query 1103 CTGTTCCAGTTTCAT 1117 ||||||| ||||||| Sbjct 1017 CTGTTCCCGTTTCAT 1031 > Ahg887573 jgi|Araly1|887573|Al_scaffold_0801_2 Length=540 Score = 874 bits (473), Expect = 0.0 Identities = 513/533 (96%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 347 TATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT 406 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT 60 Query 407 GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCGACTAGAGTTATC 466 |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 61 GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCGACGAGAGTTATC 120 Query 467 GAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCAATGACA 526 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 GAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCGATGACA 180 Query 527 TTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCATCATTTAAAGCTA 586 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || Sbjct 181 TTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCATCATTTAAAGTTA 240 Query 587 TACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAT 646 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAC 300 Query 647 GACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTTCAGAATCATCCG 706 ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 301 GACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTTCAGAATCATCCG 360 Query 707 GCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTCGAA 766 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 361 GCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTGGAG 420 Query 767 GATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGACAATGGTTCATG 826 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 GATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGACAATGGTTCATG 480 Query 827 AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAACAGGT 879 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 481 AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCGGCTGCTCGTCAACAGGT 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43536371214 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5